BAC Information

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BAC

Clone NameB6Ng01-066A08
Chromosome3 (Build37)
Map Location 34,874,787 - 35,014,846
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636, EG622074, Sox2, LOC100041108
Downstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066A08.bB6Ng01-066A08.g
ACCDH885323DH885324
length686992
definitionDH885323|Mus musculus domesticus DNA, BAC clone: B6Ng01-066A08, 5' end.DH885324|Mus musculus domesticus DNA, BAC clone: B6Ng01-066A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,014,318 - 35,014,846)(34,874,787 - 34,875,775)
sequence
gaattcttggcttcgttttattccccacttttttattgggttctttgggt
ttttggtgattaacttcttgagctctttatatattttagatattagcctt
ctatcagatattgggttagtgaaggttttttttcccaatctgtaggctga
ctatctgtcttagtgactatgtcctttgccttacagaagctttccagttt
catgaggtcccatttatcaattcttgatcttagagcatgaacaagtgaag
ttctgtttaggaaaatttcccctgtgccaatgagttcaaggctctttccc
actttctcctctattagattcagtgtatctgttttatgttgaggttcttt
cttaaaagagaacatgaagttggaagggagccagaagggtagaggagata
agagaggaggtagagtggagagaatggataattctcaacaaaaataatta
tcaaaaggaaatagcctaaagtagtatataactgaaaagacacaactgtt
atgtagtgcaatgccacacaggacagtactgccatcagtggccactctat
tcagtggcacactggatccacttattcctttcaaagcactgcccactgag
atgatcccactgagccgattccactgagccaatctccatgccctctccat
tttaccatctctgtagcagtaaacgttgaaagttgg
gaattctatgtggcaatctgcagagggatacatttcactactaatttttt
taaaggttggttttaaaatatcagtcaggacttctttttattattggtct
ttggttgggtttacagattggggctcagcagaggtgctgccttgtatgga
gaaatcaggacctcgctttccaacctctttctgtctcctttcttacatct
aacacatgtatccatcagcagatgttgtgctccaaagccaggtggctctc
ccagaatgcatagcaaatatttcccaggcctttggtgcaaggctgtccac
ctgttctctaatacaactttatagcttagaaacaaaacagtaattcttag
tgaaagatcttcagaatgtggagtttttagcaccatctgtagagtagagc
ttcttggctgtgttgagggtgtgtctcttacagtcataattgtcttgtgg
gcagaaagagagatgtggaatttagagatgcagggagagaaagaatggca
aaggaatagatatttcatctgtgaagtcaacttcttaagaatttcagaaa
ttggactttccacattgaatcttcctttgttgctgttattaagatagtct
tatgtagcacaggctagctctaatctcaccacacagccaagtatgaccgt
gaacttctgaacctcttgcctcttcttcctgagtgctaggattacagatt
tgtggcagtatgcctggtttgatgcagctctgaggactgaatccagagct
ttctgcagtgatgcactctactgactaagctacatctttttaacgtgagc
gagatgtttaaaactctgcttttaaccagtccaaggcttaggtgtctttg
aaggtacttcctaaatagtattaatgactgccttctacttggcaagcaat
gtacgggcatggccttgtttatgaagtgcagtgggaatctgtagggaatg
gaaaggaatatgttatagaagtttcatataagtcccacaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_35014318_35014846
seq2: B6Ng01-066A08.b_189_717 (reverse)

seq1  CCAACTTTCAACGTTTACTGCTACAGAGATGGTAAAATGGAGAGGGCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTTCAACGTTTACTGCTACAGAGATGGTAAAATGGAGAGGGCATG  50

seq1  GAGATTGGCTCAGTGGAATCGGCTCAGTGGGATCATCTCAGTGGGCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGGCTCAGTGGAATCGGCTCAGTGGGATCATCTCAGTGGGCAGTG  100

seq1  CTTTGAAAGGAATAAGTGGATCCAGTGTGCCACTGAATAGAGTGGCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAGGAATAAGTGGATCCAGTGTGCCACTGAATAGAGTGGCCACT  150

seq1  GATGGCAGTACTGTCCTGTGTGGCATTGCACTACATAACAGTTGTGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAGTACTGTCCTGTGTGGCATTGCACTACATAACAGTTGTGTCTT  200

seq1  TTCAGTTATATACTACTTTAGGCTATTTCCTTTTGATAATTATTTTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTATATACTACTTTAGGCTATTTCCTTTTGATAATTATTTTTGTT  250

seq1  GAGAATTATCCATTCTCTCCACTCTACCTCCTCTCTTATCTCCTCTACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTATCCATTCTCTCCACTCTACCTCCTCTCTTATCTCCTCTACCC  300

seq1  TTCTGGCTCCCTTCCAACTTCATGTTCTCTTTTAAGAAAGAACCTCAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTCCCTTCCAACTTCATGTTCTCTTTTAAGAAAGAACCTCAACA  350

seq1  TAAAACAGATACACTGAATCTAATAGAGGAGAAAGTGGGAAAGAGCCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGATACACTGAATCTAATAGAGGAGAAAGTGGGAAAGAGCCTTG  400

seq1  AACTCATTGGCACAGGGGAAATTTTCCTAAACAGAACTTCACTTGTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATTGGCACAGGGGAAATTTTCCTAAACAGAACTTCACTTGTTCAT  450

seq1  GCTCTAAGATCAAGAATTGATAAATGGGACCTCATGAAACTGGAAAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAGATCAAGAATTGATAAATGGGACCTCATGAAACTGGAAAGCTT  500

seq1  CTGTAAGGCAAAGGACATAGTCACTAAGA  529
      |||||||||||||||||||||||||||||
seq2  CTGTAAGGCAAAGGACATAGTCACTAAGA  529

seq1: chr3_34874787_34875775
seq2: B6Ng01-066A08.g_68_1059

seq1  GAATTCTATGTGGCAATCTGCAGAGGGATACATTTCACTACTAATTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTGGCAATCTGCAGAGGGATACATTTCACTACTAATTTTTT  50

seq1  TAAAGGTTGGTTTTAAAATATCAGTCAGGACTTCTTTTTATTATTGGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTTGGTTTTAAAATATCAGTCAGGACTTCTTTTTATTATTGGTCT  100

seq1  TTGGTTGGGTTTACAGATTGGGGCTCAGCAGAGGTGCTGCCTTGTATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGGGTTTACAGATTGGGGCTCAGCAGAGGTGCTGCCTTGTATGGA  150

seq1  GAAATCAGGACCTCGCTTTCCAACCTCTTTCTGTCTCCTTTCTTACATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGGACCTCGCTTTCCAACCTCTTTCTGTCTCCTTTCTTACATCT  200

seq1  AACACATGTATCCATCAGCAGATGTTGTGCTCCAAAGCCAGGTGGCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGTATCCATCAGCAGATGTTGTGCTCCAAAGCCAGGTGGCTCTC  250

seq1  CCAGAATGCATAGCAAATATTTCCCAGGCCTTTGGTGCAAGGCTGTCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATGCATAGCAAATATTTCCCAGGCCTTTGGTGCAAGGCTGTCCAC  300

seq1  CTGTTCTCTAATACAACTTTATAGCTTAGAAACAAAACAGTAATTCTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCTAATACAACTTTATAGCTTAGAAACAAAACAGTAATTCTTAG  350

seq1  TGAAAGATCTTCAGAATGTGGAGTTTTTAGCACCATCTGTAGAGTAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATCTTCAGAATGTGGAGTTTTTAGCACCATCTGTAGAGTAGAGC  400

seq1  TTCTTGGCTGTGTTGAGGGTGTGTCTCTTACAGTCATAATTGTCTTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGCTGTGTTGAGGGTGTGTCTCTTACAGTCATAATTGTCTTGTGG  450

seq1  GCAGAAAGAGAGATGTGGAATTTAGAGATGCAGGGAGAGAAAGAATGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGAGAGATGTGGAATTTAGAGATGCAGGGAGAGAAAGAATGGCA  500

seq1  AAGGAATAGATATTTCATCTGTGAAGTCAACTTCTTAAGAATTTCAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATAGATATTTCATCTGTGAAGTCAACTTCTTAAGAATTTCAGAAA  550

seq1  TTGGACTTTCCACATTGAATCTTCCTTTGTTGCTGTTATTAAGATAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTTTCCACATTGAATCTTCCTTTGTTGCTGTTATTAAGATAGTCT  600

seq1  TATGTAGCACAGGCTAGCTCTAATCTCACCACACAGCCAAGTATGACCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGCACAGGCTAGCTCTAATCTCACCACACAGCCAAGTATGACCGT  650

seq1  GAACTTCTGAACCTCTTGCCTCTTCTTCCTGAGTGCTAGGATTACAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCTGAACCTCTTGCCTCTTCTTCCTGAGTGCTAGGATTACAGATT  700

seq1  TGTGGCAGTATGCCTGGTTTGATGCAGCTCTGAGGACTGAATCCAGAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAGTATGCCTGGTTTGATGCAGCTCTGAGGACTGAATCCAGAGCT  750

seq1  TTCTGCAGTGATGCACTCTACTGACTAAGCTACATC-TTTTAACGTGAGC  799
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCTGCAGTGATGCACTCTACTGACTAAGCTACATCTTTTTAACGTGAGC  800

seq1  GAGATGTTTAAAACTCTGCTTTTAACCAGTCCAAGGCTTAGGTGTCTTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTTTAAAACTCTGCTTTTAACCAGTCCAAGGCTTAGGTGTCTTTG  850

seq1  AAGGTACTTCCTAAATAGTATTAATGACTGCC-TCTACTTGGCAAGCAAT  898
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGGTACTTCCTAAATAGTATTAATGACTGCCTTCTACTTGGCAAGCAAT  900

seq1  GTACGGGCATGGCC-TGTTTATGAAGTGCAGTGGGAATCTGTAGGGGAAT  947
      |||||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  GTACGGGCATGGCCTTGTTTATGAAGTGCAGTGGGAATCTGTA-GGGAAT  949

seq1  GG-AAGGAATATGTTATAG-AGTTTCATAGAAGTCACCACAATC  989
      || |||||||||||||||| ||||||||| ||||| ||||||||
seq2  GGAAAGGAATATGTTATAGAAGTTTCATATAAGTC-CCACAATC  992