BAC Information

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BAC

Clone NameB6Ng01-066C21
Chromosome3 (Build37)
Map Location 53,902,586 - 54,090,526
singlet/doubletdoublet
Overlap geneTrpc4
Upstream geneLhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937
Downstream genePostn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066C21.bB6Ng01-066C21.g
ACCDH885427DH885428
length1,164592
definitionDH885427|Mus musculus domesticus DNA, BAC clone: B6Ng01-066C21, 5' end.DH885428|Mus musculus domesticus DNA, BAC clone: B6Ng01-066C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,089,349 - 54,090,526)(53,902,586 - 53,903,177)
sequence
gaattccaaaggctcaagatggtagcccagtgttgtagaataaacacctc
ccacctgtctaagataatcatacacatttccccaccccatcaagtaactg
tgtttcactctactcctactgtggtgttattttccttatagcctcccttg
ctgaaaaatgtaatttttctaagagaactcctctttttgtagatatgaag
ttagccatgtgctatgtagttcctagtgtctcctgaaggagcactgtcct
ctgaatttcttcacaactgaagctctaatataacacgagaagagtaagat
atgtttaaggacacgggtgacgcagaatgttaatcagctgtagaaatgtg
ggcttctggatatagctgagggtttgagaaaaggaagaagagcctacata
tatcagacccaagtcatgaagtcttggcaggctgttaagagctgatgatg
gattggatcataatattgggttataagttcctagactgtagaaacatatg
ctagttcatcttcatgccctttacaagttcatgcatattcaaaaaagcta
aactgtcaatcaacaggagtaaaactttcaggtggatgtaatatgaaaat
ggctgttgatccagaatgtcctcctaaggctcatttgatagaccatgact
ccagcctggtgttaattggagatgacaaacctttcagaggtggctgtatc
atttagggagacgcccttgaatgaggggatcctggtcccttctttgttcc
attttttccacttataggtcacttgcttgctccatcctgcatttcccaac
atattacagaagtgccaagtgaccctcaaactgtgagccaaagacctttt
ctttttataagttgattgtctcagtatttgatatagtaatgaaatctaac
tagcacatttgtcataggagattacagggaaaaatcatttattaatttta
atgatattttacaagatggttcttagtcaagttttttattctggcacaac
ttcattgaccagaagcaagtgggggaggaaagggtttattcgctatactc
tcacactgctgttccttcaccaaggagtcagactggaattcaagcgggta
agaacaggagctgattctagcccttgaaggaggttcttttctggcttgct
ccatggcttgctca
gaattcagtagacagggtttggcttatgacagcgtatgatcccaaagacc
agccatacaagagctaaaactgggaatagattgaatgaatctaactaact
caattcccttgtctagcaacacccacagcaaagtgcgagttgtctcccat
gtgaccatgagcctgactgacaggcatagctcactacatctgtccaatat
taccaaagaggactgtattttatagatggccctgcctgggaaacaaaatc
taaaaacctcaaatacagtgttctagtttggtttctgttgatatgatgaa
atgctctgaccaacagcaactccgggaggaaaggattcattgggattaca
ctttacagtccatcatcaaaggaagccaggggaggacctcaaagcagaaa
cttcgaggcaagagctgaagcagagaccactgaggagcgccgcttacagg
tccttttcctggtttgcctagctaccttgcttgtacatcttaggatcatc
cactcaggcccagcactgggaaccctgtgctgggccctgctatgtcaatc
agaagagaagaaaattccctcacagtcggggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_54089349_54090526
seq2: B6Ng01-066C21.b_47_1210 (reverse)

seq1  TGAGCAAGCCAGTGGAAGCAAGCCAGTAAGTAACATCCCTCCATGGCCTC  50
      ||||||||||| ||| |||||||||| ||  ||| ||| || | |||   
seq2  TGAGCAAGCCA-TGG-AGCAAGCCAGAAAAGAACCTCCTTCAAGGGC--T  46

seq1  TGCATCAGCTCCTGTTTCCTTACCTGCTTGAATTCCAGTCCTGACTTCCT  100
       | |||||||||||||  |||||| |||||||||||||| ||||||  | 
seq2  AGAATCAGCTCCTGTT--CTTACCCGCTTGAATTCCAGT-CTGACT--CC  91

seq1  TTGGTG-ATGAACAGCAGTGTGGAAGTATAAGCTGAATAAACCCTTTCCT  149
      |||||| | |||||||||||||  ||||| ||| ||||||||||||||||
seq2  TTGGTGAAGGAACAGCAGTGTGAGAGTAT-AGC-GAATAAACCCTTTCCT  139

seq1  CCCCAACTTGCTTCTTGGTCATTGATGTTTGTGCAGGAATAGAAACCTTG  199
      |||| ||||||||| |||||| ||| | ||||||  ||||| ||| ||||
seq2  CCCCCACTTGCTTC-TGGTCAATGAAG-TTGTGCCAGAATAAAAAACTTG  187

seq1  ACTAAG-ACCATCTTGTAAAATATTCATTAAAATTAATACATGATTTTTT  248
      |||||| |||||||||||||||| ||||||||||||||| |||| |||||
seq2  ACTAAGAACCATCTTGTAAAATA-TCATTAAAATTAATAAATGA-TTTTT  235

seq1  CCCTGTAATCTCCTATGACAAATGTGCTAGTTAGATTTCATTACTATATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTAATCTCCTATGACAAATGTGCTAGTTAGATTTCATTACTATATC  285

seq1  AAATACCTGAGACAATCAACTTATAAAAAGAAAAGGTCTTTGGCTCACAG  348
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATA-CTGAGACAATCAACTTATAAAAAGAAAAGGTCTTTGGCTCACAG  334

seq1  TTTGAGGGTCACTTGGCACTTCTGTAATATGTTGGGAAATGCAGGATGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGGTCACTTGGCACTTCTGTAATATGTTGGGAAATGCAGGATGGA  384

seq1  GCAAGCAAGTGACCTATAAGTGGAAAAAATGGAACAAAGAAGGGACCAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAAGTGACCTATAAGTGGAAAAAATGGAACAAAGAAGGGACCAGG  434

seq1  ATCCCCTCATTCAAGGGCGTCTCCCTAAATGATACAGCCACCTCTGAAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTCATTCAAGGGCGTCTCCCTAAATGATACAGCCACCTCTGAAAG  484

seq1  GTTTGTCATCTCCAATTAACACCAGGCTGGAGTCATGGTCTATCAAATGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCATCTCCAATTAACACCAGGCTGGAGTCATGGTCTATCAAATGA  534

seq1  GCCTTAGGAGGACATTCTGGATCAACAGCCATTTTCATATTACATCCACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGGAGGACATTCTGGATCAACAGCCATTTTCATATTACATCCACC  584

seq1  TGAAAGTTTTACTCCTGTTGATTGACAGTTTAGCTTTTTTGAATATGCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTTTTACTCCTGTTGATTGACAGTTTAGCTTTTTTGAATATGCAT  634

seq1  GAACTTGTAAAGGGCATGAAGATGAACTAGCATATGTTTCTACAGTCTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGTAAAGGGCATGAAGATGAACTAGCATATGTTTCTACAGTCTAG  684

seq1  GAACTTATAACCCAATATTATGATCCAATCCATCATCAGCTCTTAACAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTATAACCCAATATTATGATCCAATCCATCATCAGCTCTTAACAGC  734

seq1  CTGCCAAGACTTCATGACTTGGGTCTGATATATGTAGGCTCTTCTTCCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAGACTTCATGACTTGGGTCTGATATATGTAGGCTCTTCTTCCTT  784

seq1  TTCTCAAACCCTCAGCTATATCCAGAAGCCCACATTTCTACAGCTGATTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAACCCTCAGCTATATCCAGAAGCCCACATTTCTACAGCTGATTA  834

seq1  ACATTCTGCGTCACCCGTGTCCTTAAACATATCTTACTCTTCTCGTGTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTGCGTCACCCGTGTCCTTAAACATATCTTACTCTTCTCGTGTTA  884

seq1  TATTAGAGCTTCAGTTGTGAAGAAATTCAGAGGACAGTGCTCCTTCAGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAGCTTCAGTTGTGAAGAAATTCAGAGGACAGTGCTCCTTCAGGA  934

seq1  GACACTAGGAACTACATAGCACATGGCTAACTTCATATCTACAAAAAGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTAGGAACTACATAGCACATGGCTAACTTCATATCTACAAAAAGAG  984

seq1  GAGTTCTCTTAGAAAAATTACATTTTTCAGCAAGGGAGGCTATAAGGAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTCTTAGAAAAATTACATTTTTCAGCAAGGGAGGCTATAAGGAAA  1034

seq1  ATAACACCACAGTAGGAGTAGAGTGAAACACAGTTACTTGATGGGGTGGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACCACAGTAGGAGTAGAGTGAAACACAGTTACTTGATGGGGTGGG  1084

seq1  GAAATGTGTATGATTATCTTAGACAGGTGGGAGGTGTTTATTCTACAACA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGTATGATTATCTTAGACAGGTGGGAGGTGTTTATTCTACAACA  1134

seq1  CTGGGCTACCATCTTGAGCCTTTGGAATTC  1178
      ||||||||||||||||||||||||||||||
seq2  CTGGGCTACCATCTTGAGCCTTTGGAATTC  1164

seq1: chr3_53902586_53903177
seq2: B6Ng01-066C21.g_68_659

seq1  GAATTCAGTAGACAGGGTTTGGCTTATGACAGCGTATGATCCCAAAGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGACAGGGTTTGGCTTATGACAGCGTATGATCCCAAAGACC  50

seq1  AGCCATACAAGAGCTAAAACTGGGAATAGATTGAATGAATCTAACTAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATACAAGAGCTAAAACTGGGAATAGATTGAATGAATCTAACTAACT  100

seq1  CAATTCCCTTGTCTAGCAACACCCACAGCAAAGTGCGAGTTGTCTCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCCTTGTCTAGCAACACCCACAGCAAAGTGCGAGTTGTCTCCCAT  150

seq1  GTGACCATGAGCCTGACTGACAGGCATAGCTCACTACATCTGTCCAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCATGAGCCTGACTGACAGGCATAGCTCACTACATCTGTCCAATAT  200

seq1  TACCAAAGAGGACTGTATTTTATAGATGGCCCTGCCTGGGAAACAAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAGAGGACTGTATTTTATAGATGGCCCTGCCTGGGAAACAAAATC  250

seq1  TAAAAACCTCAAATACAGTGTTCTAGTTTGGTTTCTGTTGATATGATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACCTCAAATACAGTGTTCTAGTTTGGTTTCTGTTGATATGATGAA  300

seq1  ATGCTCTGACCAACAGCAACTCCGGGAGGAAAGGATTCATTGGGATTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTGACCAACAGCAACTCCGGGAGGAAAGGATTCATTGGGATTACA  350

seq1  CTTTACAGTCCATCATCAAAGGAAGCCAGGGGAGGACCTCAAAGCAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAGTCCATCATCAAAGGAAGCCAGGGGAGGACCTCAAAGCAGAAA  400

seq1  CTTCGAGGCAAGAGCTGAAGCAGAGACCACTGAGGAGCGCCGCTTACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGAGGCAAGAGCTGAAGCAGAGACCACTGAGGAGCGCCGCTTACAGG  450

seq1  TCCTTTTCCTGGTTTGCCTAGCTACCTTGCTTGTACATCTTAGGATCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCCTGGTTTGCCTAGCTACCTTGCTTGTACATCTTAGGATCATC  500

seq1  CACTCAGGCCCAGCACTGGGAACCCTGTGCTGGGCCCTGCTATGTCAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGGCCCAGCACTGGGAACCCTGTGCTGGGCCCTGCTATGTCAATC  550

seq1  AGAAGAGAAGAAAATTCCCTCACAGTCGGGGGGGGGGGGGGG  592
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAAGAAAATTCCCTCACAGTCGGGGGGGGGGGGGGG  592