BAC Information

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BAC

Clone NameB6Ng01-066F01
Chromosome3 (Build37)3 (Build37)
Map Location 71,665,116 - 71,665,66529,379,325 - 29,380,431
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG667377, LOC667385
Downstream geneLOC100041459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066F01.bB6Ng01-066F01.g
ACCDH885525DH885526
length9471,101
definitionDH885525|Mus musculus domesticus DNA, BAC clone: B6Ng01-066F01, 5' end.DH885526|Mus musculus domesticus DNA, BAC clone: B6Ng01-066F01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,665,116 - 71,665,665)(29,379,325 - 29,380,431)
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
attgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaattctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatgatcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttattaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccatctactcctcttgggtgaatttgcttccttttttctagggc
ttttagatgtgttgtcaagctgctagtatgtgctgtctcccgtttct
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ctcagcatctttaatcatcagagaaatgcaaatcaaaacaactctgagat
tccatctcacaccagtcagaatggctaagatcaaaatttcaggtgacagc
agatgctgttgaggatgtggagaaagaggaacactcctccattgtttgtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctcc
gaaaattggacatagtactactggaggatccagcagtacctctcctgggc
acatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaaacgtggtacaatttagagtg
gtaagtggaaacaatttagagtagatgtcttgacaaatgataatggtgtg
gctttctgagttcttcctgaaaacagagatcaggaaatttcaacctgtcc
agagctaaggcattccaaagaagaattggtaaacagagtgaaaatgatgt
cttattacagctgtgctccaccagatcacagtgcccctcttacctcagac
tctacccaatcaatggctttatctcctcacactccacccaatgcctctat
cacttcataccccccacccagtggctttttcacctcatattccacctaat
gcttttttcaagttataatattgtactgtatccctatctcccccatctga
atttgcctattttcactgttccactaaattgtatgaggaatttttctatc
tagcgagcctatcctatatatagagttccaaatccatgaaagactcaaac
aatgatttttaaaaataggttttcagcattttgaggagaactctcaagtt
gtgtcttactgttacccatataggcacttctcacacattacatgcacaca
catgggacataatactgtgtagagagaacacaaaaggtgatcaccatgat
tccaatgaaatcatgaatgtctaaccctcctcacagagagacaaatagac
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_71665116_71665665
seq2: B6Ng01-066F01.b_46_595 (reverse)

seq1  AAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCAAA  50
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  AAGTTGAATCAGGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAA  50

seq1  AGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGAC  100

seq1  CAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATT  150
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAGATGGGTTTAGTGCAGAATTCTATCAGACCTTCAAAGAAGATCTAATT  150

seq1  CCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACC  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACC  200

seq1  CAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAG  250

seq1  ATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGAT  300
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCAAT  300

seq1  GCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAA  350

seq1  AGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGAT  400

seq1  GGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTC  450

seq1  AAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGA  500

seq1  CAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTC  550

seq1: chr3_29379325_29380431
seq2: B6Ng01-066F01.g_69_1163 (reverse)

seq1  TTTGTCTCTCTGTGAAGAAGGGTGTAGACATTCATGGATTTCACTGGGAA  50
      |||||||||||||| || ||||| ||||||||||| ||||||| | ||||
seq2  TTTGTCTCTCTGTG-AGGAGGGT-TAGACATTCAT-GATTTCA-TTGGAA  46

seq1  TCATGGGTGATCACCTTTCTGTGGTATCTCTCTACACGGTATTTATGTCC  100
      |||| ||||||||||||| ||||   ||||||||||| ||| ||||||||
seq2  TCAT-GGTGATCACCTTT-TGTG--TTCTCTCTACACAGTA-TTATGTCC  91

seq1  CATGTGTGTGCATGTTAATGTGTGGGAAGGTGCCTATATGGGTAACAGTG  150
      |||||||||||||| ||||||||| ||| |||||||||||||||||||| 
seq2  CATGTGTGTGCATG-TAATGTGTGAGAA-GTGCCTATATGGGTAACAGTA  139

seq1  AGACACAACCTTGAGAGTTTCTCCTC-AAATGCTGACAACCTATTTTTAA  199
      |||||||| |||||||| |||||||| ||||||||| |||||||||||||
seq2  AGACACAA-CTTGAGAG-TTCTCCTCAAAATGCTGAAAACCTATTTTTAA  187

seq1  AAATCATTGTTTGAGTCTTTCATGGATTTGGAACTCTATATATAGGATAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTGTTTGAGTCTTTCATGGATTTGGAACTCTATATATAGGATAG  237

seq1  GCTCGCTAGATAGAAAAATTCCTCATACAATTTAGTGGAACAGTGAAAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCTAGATAGAAAAATTCCTCATACAATTTAGTGGAACAGTGAAAAT  287

seq1  AGGCAAATTCAGATGGGGGAGATAGGGATACAGTACAATATTATAACTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAATTCAGATGGGGGAGATAGGGATACAGTACAATATTATAACTTG  337

seq1  AAAAAAGCATTAGGTGGAATATGAGGTGAAAAAGCCACTGGGTGGGGGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCATTAGGTGGAATATGAGGTGAAAAAGCCACTGGGTGGGGGGT  387

seq1  ATGAAGTGATAGAGGCATTGGGTGGAGTGTGAGGAGATAAAGCCATTGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTGATAGAGGCATTGGGTGGAGTGTGAGGAGATAAAGCCATTGAT  437

seq1  TGGGTAGAGTCTGAGGTAAGAGGGGCACTGTGATCTGGTGGAGCACAGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGAGTCTGAGGTAAGAGGGGCACTGTGATCTGGTGGAGCACAGCT  487

seq1  GTAATAAGACATCATTTTCACTCTGTTTACCAATTCTTCTTTGGAATGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAGACATCATTTTCACTCTGTTTACCAATTCTTCTTTGGAATGCC  537

seq1  TTAGCTCTGGACAGGTTGAAATTTCCTGATCTCTGTTTTCAGGAAGAACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCTGGACAGGTTGAAATTTCCTGATCTCTGTTTTCAGGAAGAACT  587

seq1  CAGAAAGCCACACCATTATCATTTGTCAAGACATCTACTCTAAATTGTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCCACACCATTATCATTTGTCAAGACATCTACTCTAAATTGTTT  637

seq1  CCACTTACCACTCTAAATTGTACCACGTTTTTTTGTATCCATTCCTCTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTACCACTCTAAATTGTACCACGTTTTTTTGTATCCATTCCTCTGT  687

seq1  TGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAACAAGGCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAACAAGGCTG  737

seq1  CTATGAACATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGACATCTTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAACATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGACATCTTCT  787

seq1  GGATATGTGCCCAGGAGAGGTACTGCTGGATCCTCCAGTAGTACTATGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGTGCCCAGGAGAGGTACTGCTGGATCCTCCAGTAGTACTATGTC  837

seq1  CAATTTTCGGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTCGGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCT  887

seq1  TGCAATCCCACAAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCCCACAAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCAA  937

seq1  CAGCATCTGCTGTCACCTGAAATTTTGATCTTAGCCATTCTGACTGGTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTGCTGTCACCTGAAATTTTGATCTTAGCCATTCTGACTGGTGT  987

seq1  GAGATGGAATCTCAGAGTTGTTTTGATTTGCATTTCTCTGATGATTAAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGAATCTCAGAGTTGTTTTGATTTGCATTTCTCTGATGATTAAAG  1037

seq1  ATGCTGAGCATTTTTTCAGGTGCTTCTCAGCCATTCGGTATTCCTCAGGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAGCATTTTTTCAGGTGCTTCTCAGCCATTCGGTATTCCTCAGGT  1087

seq1  GAGAATTC  1107
      ||||||||
seq2  GAGAATTC  1095