BAC Information

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BAC

Clone NameB6Ng01-066J06
Chromosome3 (Build37)
Map Location 38,249,559 - 38,250,780
singlet/doubletsinglet
Overlap genenone
Upstream geneFgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785
Downstream geneLOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4, LOC100041432
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066J06.b
ACCDH885720
length1,188
definitionDH885720|Mus musculus domesticus DNA, BAC clone: B6Ng01-066J06, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccgcttttataaatgatgagatatttattgaacagaaaggacaaa
ggaagcgcccatcttcccctgcgtagggcttgatgggttgttcctgctac
tctcttctgctactaggttttgttctgttctgttttcccccgagacttct
gagagttaccgtgggaagctgtacctggctacaggactttcaacaggacc
gtgtatcttcacctaaatttaaaagagactcttgatgttaaggaggaagg
cagtaacatactaattttgaacacattagtttgaggaacaaaaacattga
aaagttaaggttttaaattattactatttagagaaaccatgtaattttaa
cccatactttttcctagcaacaagagatattgcaatatttcaattacttc
acagaactcacataaaccttgaaagtaaaaggattattttctccaagtta
taagaaaggcctatagcctcatatctgtggtttattcctggggagtgctt
ccttcccctaaatttagtttcaaaaatctttgcaaactcagttatttatg
tagttatcaaaaaatccataatatatttgtgatgcaaaaagaatatttga
gcatgacagaaatttgtttctgattgcaatggatattctgatggaaatta
ccaaacaaggtcacgttggctgctctgctctgtacatcatactgaaatta
actttcttagttaattttaaccagcatatcgtagtctttttcaacacaca
gtttataccattatgcacagtcattaaaatgatgtttcatctgataacta
aattttacagtggtgtcttgcctttaccataccagagctgtaatgattca
tgcatgcaatttcatgtacacaactgacatctgctactgagccaaacaat
attcccatagaaaaaacagggtgctaaaaaagcgcaagtaattcaaaggg
gcaggagaggaactttcttctgagcattctgactacatgtgtgccagccc
agatgagaccgtgagtatttagagtccatggatctttgttcctctctttt
ctgataagtgttcctcaatttggatgactttaaagggccagttcgtatga
ggggtgcatatttaccatgtatatctggtggaggtataggtattacacat
gctggccacccaaccctacagcttacccacattttgtg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_38249559_38250780
seq2: B6Ng01-066J06.b_43_1230 (reverse)

seq1  CACAAAATGTTGGTAATGACTTGCTG--AGGTTGTGTGTGTGCATGCATG  48
      |||||||||| |||||      ||||   ||||| |||   ||  |||||
seq2  CACAAAATGTGGGTAA------GCTGTAGGGTTGGGTG---GCCAGCATG  41

seq1  TGTAAATATACATATACATCATACA-CAGATATACATATGTATATATATG  97
      ||||   |||| ||||| ||   || |||||||||||  ||| ||     
seq2  TGTA---ATACCTATACCTC---CACCAGATATACAT-GGTAAAT-----  79

seq1  CATACACACCTCAATACAGAAACTTGACACCTTAAATGTCATCCAAAATT  147
       || ||| |||| ||||   |||| |   |||| || ||||||| |||||
seq2  -ATGCACCCCTC-ATAC--GAACTGG--CCCTTTAAAGTCATCC-AAATT  122

seq1  GAGGAACACTTATCAAGAAAAGAGAGGAAACAAGGATCATAGGACTCTAA  197
      |||||||||||||| |||||||||||| ||||| ||||   |||||||||
seq2  GAGGAACACTTATC-AGAAAAGAGAGG-AACAAAGATCCATGGACTCTAA  170

seq1  AATGACATCACAGTCTCATCTGGGCTGGCAACACATGTAGTCAGAATGCT  247
      |   || |||| ||||||||||||||||| ||||||||||||||||||||
seq2  A--TAC-TCACGGTCTCATCTGGGCTGGC-ACACATGTAGTCAGAATGCT  216

seq1  CAGGAGAAAGGTTCCTCTCCTGCCCCTTTGAATTACTTGCGCTTTTTTAG  297
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAAA-GTTCCTCTCCTGCCCCTTTGAATTACTTGCGCTTTTTTAG  265

seq1  CACCCTGTTTTTTTCTATGGGAATATTGTTTGGCTCAGTAGCAGATGTCA  347
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTG-TTTTTTCTATGGGAATATTGTTTGGCTCAGTAGCAGATGTCA  314

seq1  GTTGTGTACATGAAATTGCATGCATGAATCATTACAGCTCTGGTATGGTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTACATGAAATTGCATGCATGAATCATTACAGCTCTGGTATGGTA  364

seq1  AAGGCAAGACACCACTGTAAAATTTAGTTATCAGATGAAACATCATTTTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAGACACCACTGTAAAATTTAGTTATCAGATGAAACATCATTTTA  414

seq1  ATGACTGTGCATAATGGTATAAACTGTGTGTTGAAAAAGACTACGATATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTGCATAATGGTATAAACTGTGTGTTGAAAAAGACTACGATATG  464

seq1  CTGGTTAAAATTAACTAAGAAAGTTAATTTCAGTATGATGTACAGAGCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAAAATTAACTAAGAAAGTTAATTTCAGTATGATGTACAGAGCAG  514

seq1  AGCAGCCAACGTGACCTTGTTTGGTAATTTCCATCAGAATATCCATTGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCAACGTGACCTTGTTTGGTAATTTCCATCAGAATATCCATTGCA  564

seq1  ATCAGAAACAAATTTCTGTCATGCTCAAATATTCTTTTTGCATCACAAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAACAAATTTCTGTCATGCTCAAATATTCTTTTTGCATCACAAAT  614

seq1  ATATTATGGATTTTTTGATAACTACATAAATAACTGAGTTTGCAAAGATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATGGATTTTTTGATAACTACATAAATAACTGAGTTTGCAAAGATT  664

seq1  TTTGAAACTAAATTTAGGGGAAGGAAGCACTCCCCAGGAATAAACCACAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACTAAATTTAGGGGAAGGAAGCACTCCCCAGGAATAAACCACAG  714

seq1  ATATGAGGCTATAGGCCTTTCTTATAACTTGGAGAAAATAATCCTTTTAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGGCTATAGGCCTTTCTTATAACTTGGAGAAAATAATCCTTTTAC  764

seq1  TTTCAAGGTTTATGTGAGTTCTGTGAAGTAATTGAAATATTGCAATATCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGTTTATGTGAGTTCTGTGAAGTAATTGAAATATTGCAATATCT  814

seq1  CTTGTTGCTAGGAAAAAGTATGGGTTAAAATTACATGGTTTCTCTAAATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGCTAGGAAAAAGTATGGGTTAAAATTACATGGTTTCTCTAAATA  864

seq1  GTAATAATTTAAAACCTTAACTTTTCAATGTTTTTGTTCCTCAAACTAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAATTTAAAACCTTAACTTTTCAATGTTTTTGTTCCTCAAACTAAT  914

seq1  GTGTTCAAAATTAGTATGTTACTGCCTTCCTCCTTAACATCAAGAGTCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAAAATTAGTATGTTACTGCCTTCCTCCTTAACATCAAGAGTCTC  964

seq1  TTTTAAATTTAGGTGAAGATACACGGTCCTGTTGAAAGTCCTGTAGCCAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTTAGGTGAAGATACACGGTCCTGTTGAAAGTCCTGTAGCCAG  1014

seq1  GTACAGCTTCCCACGGTAACTCTCAGAAGTCTCGGGGGAAAACAGAACAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCTTCCCACGGTAACTCTCAGAAGTCTCGGGGGAAAACAGAACAG  1064

seq1  AACAAAACCTAGTAGCAGAAGAGAGTAGCAGGAACAACCCATCAAGCCCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACCTAGTAGCAGAAGAGAGTAGCAGGAACAACCCATCAAGCCCT  1114

seq1  ACGCAGGGGAAGATGGCTGCTTCCTTTGTCCTTTGTGTTCTATAAATATC  1197
      ||||||||||||||||  |||||||||||||||| ||||| |||||||||
seq2  ACGCAGGGGAAGATGGGCGCTTCCTTTGTCCTTTCTGTTCAATAAATATC  1164

seq1  TCATGCATTTATTAAAGCTGAATTC  1222
      |||| ||||||| ||||| ||||||
seq2  TCAT-CATTTATAAAAGCGGAATTC  1188