BAC Information

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BAC

Clone NameB6Ng01-066K04
Chromosome3 (Build37)4 (Build37)
Map Location 41,059,202 - 41,059,73777,073,450 - 77,074,728
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066K04.bB6Ng01-066K04.g
ACCDH885761DH885762
length9991,219
definitionDH885761|Mus musculus domesticus DNA, BAC clone: B6Ng01-066K04, 5' end.DH885762|Mus musculus domesticus DNA, BAC clone: B6Ng01-066K04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,202 - 41,059,737)(77,073,450 - 77,074,728)
sequence
gaattctttgttcaggtgtgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttagctcccatttgtcaattctcgatcttacagagcaagccattgctgtt
ctgttcaggaatttttcccctgtacccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
cctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagtttttatcata
caggtcttttacttccttagttagagtcacgccgagatattttatatatt
gtgactatgagaaggtgttgtttcctatttctttctcgcctgttattct
gaattctcttttattgagtgaaaacagcttaggagcaccagtgtcaacag
attaccagcaaggaaaaatgaaggagcataaaagacctagagtaagagag
aagcatggaaaagaactgaatgtaatagaattaaggtattcactcagaaa
attacaggcacatctatacagaaacaacccttaatggcaactggttatga
gctctcaaaacacccaaaatgtaccaactattgcataaaacatgccagta
ggggcaaaactaaaatgagacacaaaaatggatacagggctcttatataa
agattgttgtggaacaagcattatctgttcacagttaattttccagtata
catgacctattccacatcctgccaggataaaggcatcacctcttaagtat
agataagaactcgcaaacgtctcctcccaggaactagtaggtagagggtt
tagatttcattattcaagcaagatgagaaggttgccagaaattgtattcg
aggttctcaaagaaaattggtatggggcaatagagtcattgtgcccttgc
ttttcactttactaaatcaatattggcaatgctcaagctcatgaaaacaa
acttcatcttgttaaaacttctgttgattggattttctctttcttatgct
caaaactgctcaaacttttacatatgtaaaattccatggttaaggattta
acagtagtaaggggattaaatgactccacaatggtgtgtgccaaggaaaa
cataattaatttggggtcagctgcttacctcagtttatcagcatattaat
cattcaaggaacatatacttaaaaaccacttacacataaactttcccatg
tcattacaaggctggagggacttaatgagagaaactgagacatcctgttg
ttaacattttaataatgtctcattattatgctacaccctcaagtatctac
agatcactacccattcatgtcttaaacctatgataccttagtttcagaac
gtaagaacctagtagacaagctactgcatgtgaggaacatgaaagcactg
tgagcatggatgatcattcttggacaattttactcaagtgtatgacttgg
cctaacttcattatacaagtaagagaaaggaatcagtgcgtactgggtgt
ggagggtggtcctttcttatcccgaatcttacctggaatttactttcacc
tgataggtgaagataatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059202_41059737
seq2: B6Ng01-066K04.b_44_580 (reverse)

seq1  AATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGATCTTCG  50
      |||||||||| |||||| ||| ||||||||||||||||||||||||||||
seq2  AATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCG  50

seq1  ACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAA  100
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  ACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAAT  100

seq1  TGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCC  150
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCC  150

seq1  ACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCC  200
      |  | ||||||||||||||||||||||||||||||||||||||||||  |
seq2  ATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTC  200

seq1  ACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGC  250

seq1  CTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGC  300
      |||||||||||||  |||||||||||||||||| | ||||||||||||||
seq2  CTTGAAGATATGGGTACAGGGGAAAAATTCCTGAACAGAACAGCAATGGC  300

seq1  TTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAA  350
      |||  ||||||||| |||||| ||||||||||| || |||||||| ||||
seq2  TTGCTCTGTAAGATCGAGAATTGACAAATGGGAGCTAATGAAACTCCAAA  350

seq1  GCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG-GCACCAACA  399
      | ||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  GTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACA  400

seq1  GATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATC  450

seq1  CAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACC  499
      ||| |||||| ||||||||||||||||||| | |||||||||||||||||
seq2  CAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACC  500

seq1  CCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  536
      |||||||||||||||||||| | || |||||||||||
seq2  CCATTAAAAAATGGGGCTCACACCTGAACAAAGAATT  537

seq1: chr4_77073450_77074728
seq2: B6Ng01-066K04.g_69_1287

seq1  GAATTCTCTTTTATTGAGTGAAAACAGCTTAGGAGCACCAGTGTCAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTTATTGAGTGAAAACAGCTTAGGAGCACCAGTGTCAACAG  50

seq1  ATTACCAGCAAGGAAAAATGAAGGAGCATAAAAGACCTAGAGTAAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCAGCAAGGAAAAATGAAGGAGCATAAAAGACCTAGAGTAAGAGAG  100

seq1  AAGCATGGAAAAGAACTGAATGTAATAGAATTAAGGTATTCACTCAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGGAAAAGAACTGAATGTAATAGAATTAAGGTATTCACTCAGAAA  150

seq1  ATTACAGGCACATCTATACAGAAACAACCCTTAATGGCAACTGGTTATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGGCACATCTATACAGAAACAACCCTTAATGGCAACTGGTTATGA  200

seq1  GCTCTCAAAACACCCAAAATGTACCAACTATTGCATAAAACATGCCAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAAAACACCCAAAATGTACCAACTATTGCATAAAACATGCCAGTA  250

seq1  GGGGCAAAACTAAAATGAGACACAAAAATGGATACAGGGCTCTTATATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAAACTAAAATGAGACACAAAAATGGATACAGGGCTCTTATATAA  300

seq1  AGATTGTTGTGGAACAAGCATTATCTGTTCACAGTTAATTTTCCAGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTTGTGGAACAAGCATTATCTGTTCACAGTTAATTTTCCAGTATA  350

seq1  CATGACCTATTCCACATCCTGCCAGGATAAAGGCATCACCTCTTAAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCTATTCCACATCCTGCCAGGATAAAGGCATCACCTCTTAAGTAT  400

seq1  AGATAAGAACTCGCAAACGTCTCCTCCCAGGAACTAGTAGGTAGAGGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGAACTCGCAAACGTCTCCTCCCAGGAACTAGTAGGTAGAGGGTT  450

seq1  TAGATTTCATTATTCAAGCAAGATGAGAAGGTTGCCAGAAATTGTATTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTCATTATTCAAGCAAGATGAGAAGGTTGCCAGAAATTGTATTCG  500

seq1  AGGTTCTCAAAGAAAATTGGTATGGGGCAATAGAGTCATTGTGCCCTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTCAAAGAAAATTGGTATGGGGCAATAGAGTCATTGTGCCCTTGC  550

seq1  TTTTCACTTTACTAAATCAATATTGGCAATGCTCAAGCTCATGAAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTTTACTAAATCAATATTGGCAATGCTCAAGCTCATGAAAACAA  600

seq1  ACTTCATCTTGTTAAAACTTCTGTTGATTGGATTTTCTCTTTCTTATGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATCTTGTTAAAACTTCTGTTGATTGGATTTTCTCTTTCTTATGCT  650

seq1  CAAAACTGCTCAAACTTTTACATATGTAAAATTCCATGGTTAAGGATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTGCTCAAACTTTTACATATGTAAAATTCCATGGTTAAGGATTTA  700

seq1  ACAGTAGTAAGGGGATTAAATGACTCCACAATGGTGTGTGCCAAGGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGTAAGGGGATTAAATGACTCCACAATGGTGTGTGCCAAGGAAAA  750

seq1  CATAATTAATTTGGGGTCAGCTGCTTACCTCAGTTTATCAGCATATTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTAATTTGGGGTCAGCTGCTTACCTCAGTTTATCAGCATATTAAT  800

seq1  CATTCAAGGAACATATACTTAAAAACCACTTACACATAAACTTTCCCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAGGAACATATACTTAAAAACCACTTACACATAAACTTTCCCATG  850

seq1  TCATTACAAGGCTGGAGGGACTTAAATGAGAGAAACTGAGACATCCTGTT  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCATTACAAGGCTGGAGGGACTT-AATGAGAGAAACTGAGACATCCTGTT  899

seq1  GTTAACATTTTAATAATGTCTCATTATTATGCTACACCCTCAAGTATCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATTTTAATAATGTCTCATTATTATGCTACACCCTCAAGTATCTA  949

seq1  CAGATCACTACCCATTCATTGTCTTAAACCTATGATAACCTTAGTTTCCA  1000
      |||||||||||||||||| ||||||||||||||||| |||||||||| ||
seq2  CAGATCACTACCCATTCA-TGTCTTAAACCTATGAT-ACCTTAGTTT-CA  996

seq1  GAACCGTAAGAACCTAGTAAGACAAGCTACTGCATGTGAGGGATACATGA  1050
      ||| |||||||||||||| ||||||||||||||||||||||   ||||||
seq2  GAA-CGTAAGAACCTAGT-AGACAAGCTACTGCATGTGAGG--AACATGA  1042

seq1  AAGGCACTGTGAGCATGGATGATCATATCCTGGGAACAAATTTTTACCTC  1100
      || ||||||||||||||||||||||| || |||  ||||  ||||| |||
seq2  AA-GCACTGTGAGCATGGATGATCAT-TCTTGG--ACAA--TTTTA-CTC  1085

seq1  AAGTGGTAATGACTTTGCCCTAAAACTCTCATAATAAACCAGAGTAAAGA  1150
      |||||   ||||||| |||    |||| |||| ||| |    ||| ||||
seq2  AAGTG--TATGACTTGGCC---TAACT-TCATTATACA----AGT-AAGA  1124

seq1  GAAAAGAAATACAAGTTTGCAGTTACTTGTGTGTGGAGGTGTGTGTTCCC  1200
      |||| |||  |      |||   ||| || |||||||||   ||| |  |
seq2  GAAAGGAATCA-----GTGC--GTAC-TGGGTGTGGAGG---GTGGT--C  1161

seq1  CTTGCTCTATATCCTCACCAGAATATTCTTTCACTTGAGTATTTTATCTA  1250
      ||| ||   |||     || |||| ||     || || | ||||  |   
seq2  CTTTCT---TAT-----CCCGAATCTT-----ACCTG-GAATTTACT---  1194

seq1  TTCTACTCTGATAGGTGTAAGATAGATTA  1279
      ||| || |||||||||| |||||| ||||
seq2  TTC-AC-CTGATAGGTG-AAGATA-ATTA  1219