BAC Information

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BAC

Clone NameB6Ng01-066P24
Chromosome3 (Build37)
Map Location 99,851,506 - 99,852,128
singlet/doubletsinglet
Overlap geneSpag17
Upstream geneLOC668557, Wars2, Tbx15, M6pr-ps, LOC623045
Downstream geneWdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066P24.bB6Ng01-066P24.g
ACCDH886023DH886024
length1,18169
definitionDH886023|Mus musculus domesticus DNA, BAC clone: B6Ng01-066P24, 5' end.DH886024|Mus musculus domesticus DNA, BAC clone: B6Ng01-066P24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaaaagaagaaacacaaatacccaagaaacaaagaaacatatt
taaaaggtattcgacatccttagcaattagggaaaggaagatttaaagca
ataattaaaatctcattaaaatgagagtccatctcactccagttagaatg
gctaccatccaggaaacaggtgataagtgcttgtgaggaagtggggaaga
cacgtccctctggatggagagaagtatatgttttctcaaaattaaaaata
gaactaccatatgacctagctacagtactcctggacatatacccaaggac
tccatattctccagacagatatttacactcgatgtttattgctgctccat
tcaccacagcaaggggacagaagcagccacgatgcccatcaacagataaa
tggataatgtggtgcatacacacagtggagtcttactcaaccttaaagaa
aaatgaaatttgcaggaaaatgagtaaatctgggagttattgtgttaaat
tagctcaaacagactaagaaagaggaataccacatgatctgtgatatgag
gttctacctttaaatttttatgtgtgtatatttctctgagttatgaagag
tttttaaaagagaagaagaacagggagaaaataatagaatacacaggaca
caaaagtagaaaggaagatgcttgtatattgtttgtaacaaaaggtccat
tgttcaatttcaccaataaagactcgggagccagatgctggggggaaagt
ctgtgagctcagagaggcagagaaaacacccagctggccttcttcctcag
ccaatgtctcaaaaagaaaagaaagctctccttccccataacatctcaaa
aacccttaaactgaatgcccctcctttctacttcctgtgtgtctctctat
tcatcctcctgataccctctcgctctctgtagcttcttttcccccagtca
actggttgcttggtccactacttcacatatagttgagtttatttaatcct
gtttacaataaacagaaagctcttggattaaaggtggtgtcctagagctg
agccccatcatattctaggaacagggatttttttcagttaacccccacat
ctgggggtttacaagtgtggatcaatttcctgcagcagacatgtatggac
atgaataagatagaggggagaggattgggta
tggttttgaattatctcagggtgtgtgtgtatgtgtgtgtatgtgtgtgt
gtgtgtgtgtgtatgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_99851506_99852128
seq2: B6Ng01-066P24.g_78_142 (reverse)

seq1  CACACATACACACACACACACACACACCATGAGACTAGTTAGAGGCTGTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCAGCGAAATGAGAGTGAGTTAGAACAGGGCAGCAACAAAAACGAAAGAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGGATTCTGAAGTTATTATAAATACGATCTTTCTAAGTAATTTTAATTTA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTAACAGATTGGAAGAAGAATATAAGAAAATAACTTTCATGATGTTTACT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TATTTAACTGGCAGTGCCATCAGCTACACCAGCCTTGATGTTGCAACCTT  250
                                                        
seq2  --------------------------------------------------  0

seq1  GGTAGCACGTGAGTCATTTGCTTGGCAACTTAGAGAGTTGGAGATGTATG  300
                                                        
seq2  --------------------------------------------------  0

seq1  GTGCCTTCTGAAGGAAGGTATCGAATACCATAATCTACTATTGTTATTGT  350
                                                        
seq2  --------------------------------------------------  0

seq1  AAATCTTCAGAAAGAATTAAAAGTATACAAAGCAGGCAAAGGCAATTGTC  400
                                                        
seq2  --------------------------------------------------  0

seq1  ATCAAGTCTGATGCTTTGATTCCACAGGACTCACGTATGCTATAGCATAA  450
                                     |||  || |     || | 
seq2  -------------------------------CACACATAC----ACACAC  15

seq1  ACACACACCCTTCTACATGCACACACATACACACACCCTTCTACATACAT  500
      |||||||| |    |||| ||||||||||||||||| |    | ||| ||
seq2  ACACACACAC----ACATACACACACATACACACACACCCTGAGATA-AT  60

seq1  ACAGAGGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  550
       || |                                             
seq2  TCAAA---------------------------------------------  65

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGGAACAGAAT  600
                                                        
seq2  --------------------------------------------------  65

seq1  AGCAGAAGAAAGAATAATTCAAA  623
                             
seq2  -----------------------  65