BAC Information

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BAC

Clone NameB6Ng01-067A08
Chromosome3 (Build37)6 (Build37)
Map Location 59,572,096 - 59,573,205105,865,874 - 105,866,004
singlet/doubletsingletsinglet
Overlap geneLOC433598
Upstream geneLOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597
Downstream geneLOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067A08.bB6Ng01-067A08.g
ACCDH886037DH886038
length1,081160
definitionDH886037|Mus musculus domesticus DNA, BAC clone: B6Ng01-067A08, 5' end.DH886038|Mus musculus domesticus DNA, BAC clone: B6Ng01-067A08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(59,572,096 - 59,573,205)(105,865,874 - 105,866,004)
sequence
gaattctgcaaccttgttcagtgccagtgattatgaagtggctcctcctg
agtaccatcggaaagccttctgaggggtgtgctcgccctctctccctcgt
gcttggatctctgtaaacagtttggttcttagtccttcttttgtacaaat
gatgtactttgaagaccgttagtgtataacagagttgtttgtttcctctt
tgattttaaacagagaaaataaaaggagtaactgctccttttttcttcct
tttttcatttcaaagtttctaccagtgtatcagtgacggacaacagagag
acatgctgtagagtgtttgcctagttgacaaagctgcttttgagtgctgg
tggttctgttcctttgacactacacacttttataatatgtgttaatgctc
tatgacaaatgctctgattcctagtgccaaaggttcacttcagtgtatat
aactgaacactcatccatctgtgctcttttttttttttaatggtgcttaa
agagcccatcctttgcaagtcatccatgtcattccttaggcatcttatct
ttgctcaactgttaaagaatggtggcttgttttcatgggttttgtatttg
tgtctaatgcacgttttaacatgatagacgcaatgcatcatgtagctgca
gttttatggaaaagtcaatcttgtaggagttgtttttcagatcttcaata
aattttttctttaaatttcaaaaaaaaaaaaaaaaaaaactcgctaaccg
gatccaagaacacattaaagcaatcatccatcctgaccaagtaggtttta
ttccagggatgcagaaatggtttaacatacgaaatccatcaatgtaatcc
attatataaacaaactcaagacaaaaccacatgatcatcttgttagatgc
tgaaaagcttttgacatatccacacccattcatgataaaagtcgtggaag
gtcaggaattcaaggccatactaacacgataaagcatctacagcaaactt
gagcacaataaagtaatggtgagagctggagcaatcacttaaatcagact
agacaggctgtcactttctctactattcaac
tcaggccctccagcacatgcctgcctatatggggccatgcttcctgccat
gatgataatggacaaaacctctgaaattctaaatcagtcccaactaaaaa
tgctttcatttgtaagaattgacatggttatactgtctcttcacagcaat
ataaccctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_59572096_59573205
seq2: B6Ng01-067A08.b_48_1128

seq1  GAATTCTGCAACCTTGTTCAGTGCCAGTGATTATGAAGTGGCTCCTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAACCTTGTTCAGTGCCAGTGATTATGAAGTGGCTCCTCCTG  50

seq1  AGTACCATCGGAAAGCCTTCTGAGGGGTGTGCTCGCCCTCTCTCCCTCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCATCGGAAAGCCTTCTGAGGGGTGTGCTCGCCCTCTCTCCCTCGT  100

seq1  GCTTGGATCTCTGTAAACAGTTTGGTTCTTAGTCCTTCTTTTGTACAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGATCTCTGTAAACAGTTTGGTTCTTAGTCCTTCTTTTGTACAAAT  150

seq1  GATGTACTTTGAAGACCGTTAGTGTATAACAGAGTTGTTTGTTTCCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACTTTGAAGACCGTTAGTGTATAACAGAGTTGTTTGTTTCCTCTT  200

seq1  TGATTTTAAACAGAGAAAATAAAAGGAGTAACTGCTCCTTTTTTCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTAAACAGAGAAAATAAAAGGAGTAACTGCTCCTTTTTTCTTCCT  250

seq1  TTTTTCATTTCAAAGTTTCTACCAGTGTATCAGTGACGGACAACAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATTTCAAAGTTTCTACCAGTGTATCAGTGACGGACAACAGAGAG  300

seq1  ACATGCTGTAGAGTGTTTGCCTAGTTGACAAAGCTGCTTTTGAGTGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTGTAGAGTGTTTGCCTAGTTGACAAAGCTGCTTTTGAGTGCTGG  350

seq1  TGGTTCTGTTCCTTTGACACTACACACTTTTATAATATGTGTTAATGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTGTTCCTTTGACACTACACACTTTTATAATATGTGTTAATGCTC  400

seq1  TATGACAAATGCTCTGATTCCTAGTGCCAAAGGTTCACTTCAGTGTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAAATGCTCTGATTCCTAGTGCCAAAGGTTCACTTCAGTGTATAT  450

seq1  AACTGAACACTCATCCATCTGTGCTCTTTTTTTTTTTTTAATGGTGCTTA  500
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AACTGAACACTCATCCATCTGTGCTC-TTTTTTTTTTTTAATGGTGCTTA  499

seq1  AAGAGCCCATCCTTTGCAAGTCATCCATGTCATTCCTTAGGCATCTTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCCATCCTTTGCAAGTCATCCATGTCATTCCTTAGGCATCTTATC  549

seq1  TTTGCTCAACTGTTAAAGAATGGTGGCTTGTTTTCATGGGTTTTGTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCAACTGTTAAAGAATGGTGGCTTGTTTTCATGGGTTTTGTATTT  599

seq1  GTGTCTAATGCACGTTTTAACATGATAGACGCAATGCATCATGTAGCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTAATGCACGTTTTAACATGATAGACGCAATGCATCATGTAGCTGC  649

seq1  AGTTTTATGGAAAAGTCAATCTTGTAGGAGTTGTTTTTCAGATCTTCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATGGAAAAGTCAATCTTGTAGGAGTTGTTTTTCAGATCTTCAAT  699

seq1  AAATTTTTTCTTTAAATTTCAAAAAAAAAAAAAAAAAAAAACTCGCTAAC  750
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAATTTTTTCTTTAAATTTC-AAAAAAAAAAAAAAAAAAAACTCGCTAAC  748

seq1  CGGATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTT  798

seq1  TATTCCAGGGATGCAGAAATGGTTTAACATACGAAAATCCATCAATGTAA  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATTCCAGGGATGCAGAAATGGTTTAACATACG-AAATCCATCAATGTAA  847

seq1  TCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTTGTTA  900
      |||||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  TCCATTATATAAACAAACTC-AAGAC-AAAACCACATGATCATCTTGTTA  895

seq1  GATGCTGAAAAAGCTTTTGACAATATCCAACACCCATTCATGATAAAAGT  950
      ||||||| ||||||||||||| |||||| |||||||||||||||||||||
seq2  GATGCTG-AAAAGCTTTTGAC-ATATCC-ACACCCATTCATGATAAAAGT  942

seq1  CGTGGAAAGGTCAGGAATTCAAGGCCCATACCTAAACACGATAAAAGCAA  1000
      ||||| |||||||||||||||||| ||||||   |||||||| ||||| |
seq2  CGTGG-AAGGTCAGGAATTCAAGG-CCATAC--TAACACGAT-AAAGC-A  986

seq1  TCTACAGCAAACCTGTAGCCAACAATAAAGTAAATGGTGAGAAGCTTGAA  1050
      |||||||||||| || |||  |||||||||| ||||||||| ||| || |
seq2  TCTACAGCAAACTTG-AGC--ACAATAAAGT-AATGGTGAG-AGC-TGGA  1030

seq1  GCAATTCCACTAAAATCAGGGACTAGACAAGGCTGTCCACTTTCTCCCTA  1100
      |||||  |||| ||||||  |||||||| ||||||| ||||||||  |||
seq2  GCAAT--CACTTAAATCA--GACTAGAC-AGGCTGT-CACTTTCT--CTA  1072

seq1  CCTATTCAAC  1110
       |||||||||
seq2  -CTATTCAAC  1081

seq1: chr6_105865874_105866004
seq2: B6Ng01-067A08.g_111_235 (reverse)

seq1  TTAGGGTCTTATTGCTGTGAAGAGATACCAGGACCATATAACCTCTTATA  50
      |||||||  |||||||||||||||| |  |  ||||| | |  ||||| |
seq2  TTAGGGTTATATTGCTGTGAAGAGACAGTATAACCATGTCAATTCTTACA  50

seq1  AAGTACAACA--TTTAATTGTGACCATCTTACAGTTTCAGAGGTTTAGTC  98
      ||  | | ||  |||| ||| |||    ||| | |||||||||||| |||
seq2  AATGAAAGCATTTTTAGTTGGGACTGATTTAGAATTTCAGAGGTTTTGTC  100

seq1  CATTATCATCGTGACAAGAAGCAGGGAAGCATG  131
      |||||||||| || || |||||| |        
seq2  CATTATCATCATGGCAGGAAGCATG--------  125