BAC Information

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BAC

Clone NameB6Ng01-067C03
Chromosome3 (Build37)
Map Location 37,360,001 - 37,501,811
singlet/doubletdoublet
Overlap geneSpata5, LOC665778
Upstream geneAnxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6
Downstream geneSpry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067C03.bB6Ng01-067C03.g
ACCDH886117DH886118
length7111,138
definitionDH886117|Mus musculus domesticus DNA, BAC clone: B6Ng01-067C03, 5' end.DH886118|Mus musculus domesticus DNA, BAC clone: B6Ng01-067C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,360,001 - 37,360,711)(37,500,645 - 37,501,811)
sequence
gaattctcctcctaaaaatcaaagttccttttgtaaacacataagtaccc
ccaagatttcccaagattttttttttttaattaagtgaagaaaactgttg
gtatagatccaagaagccaaaagtagggaattttttaaaaaatatatttt
atttcctaggtaaagcatttttgtatctaagtacatattcttacaaaatg
ctattgaaaatattttgtcagggtcctgtcagcaaaatctagctagcata
tgcaatagtgtctgggtttagtggctgtttatgggatggatccccgggtg
gggcagtctctggatggtcctacctactgtctcagctccaaactttgact
ctgtaactcattccatgggtattttgttccccattctaaggaacgaatta
tccacactttggccttccttcttcttgagtttcatgtcctttgcagattg
tatcttgggtattctaagtttcttggctaatatccctgatatagctgtct
cttgtaagactttaccagtgcctggcaaatacagaagtggatgctcacca
tcatctattggatggaacacaaggcccccaatggaggagctagagaaagt
acccaaggagctgaaggggtctgcagccctataggaggaacaacaatatg
aactaactagtattctcagagctcatgtttctagctgcatatgtagcaga
agatggcctag
gaattctcctttaagtttaaattcttccaccttggagatggactcatcag
gacagggagcagagtattttgcacattctcacagagccccctatgtattt
cttctccatcactattggcacctggctcgcctattgcttccatacagacc
agcaggtgagaaacacttcccatgtactgatgcacaacttgtatcgtcca
tgacagaaagctaacagaaaaacctgagagtctgccctgtgagggaaccc
aggtgtcctcagaagacttagtcaagaaaggagccattgcgggtagcggg
tagcgggtagcgggtagcgggtagcgggtagcggggagattttgtctctt
ctgggcagtcttcagctccttgctgtgtggaagctggtagtcatggcagg
cacacagtgtgacttgatgtcataagggaattagtcacaggccattagga
gcacatagagaccgtcccattgtttcatgactcagaggggtcatggtggg
ttataaataataccattactccattttcttgctgttggaaatgtagaatt
agccgaaagtggaacatttgacaagaaggaacaggaagggatacttcctg
ggcctgagaaggaaaagatggtgcctggacaccagatgtgtgcaggcgct
ccaacatgacagtatgccagcacagaaggactccgccgcctgtagcaacc
gcgatgaagctctatgacgttaccacacacgccaatgtgagtttctcata
ctgttatttttagccaaactgtttatatacacaagaacctgtccacacag
atgtcagtgtctgactcagtaacgtccccaagtacagaagtgcttcacgg
tttttcagtcttatttcaaaacatgaacaagttggagctgcacttgtggc
ctatgtgtgaggtcccaggttcactcgtcagagctaattaaaagcacaaa
taacttaaacatctagttatgaaaaaaagtcagactttgttagtacttca
aaagtagtgacaagtccttacagaagtggttgagagtgacttgggacaat
gggatcgtacccccccccattagagatctgaggaaaaagattgatgtagt
attatgagcataccgcacaagacctctcccttggccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_37360001_37360711
seq2: B6Ng01-067C03.b_47_757

seq1  GAATTCTCCTCCTAAAAATCAAAGTTCCTTTTGAAAACACATAAGTACCC  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATTCTCCTCCTAAAAATCAAAGTTCCTTTTGTAAACACATAAGTACCC  50

seq1  CCAAGATTTCCCAAGATTTTTTTTTTTTAATTAAGTGAAGAAAACTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATTTCCCAAGATTTTTTTTTTTTAATTAAGTGAAGAAAACTGTTG  100

seq1  GTATAGATCCAAGAAGCCAAAAGTAGGGAATTTTTTAAAAAATATATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGATCCAAGAAGCCAAAAGTAGGGAATTTTTTAAAAAATATATTTT  150

seq1  ATTTCCTAGGTAAAGCATTTTTGTATCTAAGTACATATTCTTACAAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTAGGTAAAGCATTTTTGTATCTAAGTACATATTCTTACAAAATG  200

seq1  CTATTGAAAATATTTTGTCAGGGTCCTGTCAGCAAAATCTAGCTAGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAAAATATTTTGTCAGGGTCCTGTCAGCAAAATCTAGCTAGCATA  250

seq1  TGCAATAGTGTCTGGGTTTAGTGGCTGTTTATGGGATGGATCCCCGGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATAGTGTCTGGGTTTAGTGGCTGTTTATGGGATGGATCCCCGGGTG  300

seq1  GGGCAGTCTCTGGATGGTCCTACCTACTGTCTCAGCTCCAAACTTTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTCTCTGGATGGTCCTACCTACTGTCTCAGCTCCAAACTTTGACT  350

seq1  CTGTAACTCATTCCATGGGTATTTTGTTCCCCATTCTAAGGAACGAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACTCATTCCATGGGTATTTTGTTCCCCATTCTAAGGAACGAATTA  400

seq1  TCCACACTTTGGCCTTCCTTCTTCTTGAGTTTCATGTCCTTTGCAGATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACTTTGGCCTTCCTTCTTCTTGAGTTTCATGTCCTTTGCAGATTG  450

seq1  TATCTTGGGTATTCTAAGTTTCTTGGCTAATATCCCTGATATAGCTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGGGTATTCTAAGTTTCTTGGCTAATATCCCTGATATAGCTGTCT  500

seq1  CTTGTAAGACTTTACCAGTGCCTGGCAAATACAGAAGTGGATGCTCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAGACTTTACCAGTGCCTGGCAAATACAGAAGTGGATGCTCACCA  550

seq1  TCATCTATTGGATGGAACACAAGGCCCCCAATGGAGGAGCTAGAGAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTATTGGATGGAACACAAGGCCCCCAATGGAGGAGCTAGAGAAAGT  600

seq1  ACCCAAGGAGCTGAAGGGGTCTGCAGCCCTATAGGAGGAACAACAATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGGAGCTGAAGGGGTCTGCAGCCCTATAGGAGGAACAACAATATG  650

seq1  AACTAACTAGTATTCTCAGAGCTCATGTTTCTAGCTGCATATGTAGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACTAGTATTCTCAGAGCTCATGTTTCTAGCTGCATATGTAGCAGA  700

seq1  AGATGGCCTAG  711
      |||||||||||
seq2  AGATGGCCTAG  711

seq1: chr3_37500645_37501811
seq2: B6Ng01-067C03.g_68_1205 (reverse)

seq1  TGGGCCAAGGGGAGTAGGTCTTTGTTGCTGGTTATGCTTCATTATTTAAC  50
      |||||||| ||||| |||||||   |||  | ||||| |||| ||   ||
seq2  TGGGCCAA-GGGAG-AGGTCTT--GTGC--GGTATGC-TCATAAT---AC  40

seq1  TACATTCATTTCTTTTTCTCCCTCAGATCTTCTAATGGTGGTGGGGTACG  100
      |||||  |  |||||||   ||||||||| |||||||| || ||||||||
seq2  TACATCAA--TCTTTTT---CCTCAGATC-TCTAATGG-GGGGGGGTACG  83

seq1  ATCCCATTTGTTCCCAAGTCAACTCTCAA-CACTTCTGTAAGGACTTTGT  149
      ||||||||   ||||||||| |||||||| ||||||||||||||| ||||
seq2  ATCCCATT--GTCCCAAGTC-ACTCTCAACCACTTCTGTAAGGAC-TTGT  129

seq1  CACTTACTTTTTTGTAGTACTAAACAAAGTTCTGACTTTTTTTTCATAAC  199
      ||| |||  ||||| |||||| ||||||| |||||| |||||||||||||
seq2  CAC-TAC--TTTTGAAGTACT-AACAAAG-TCTGAC-TTTTTTTCATAAC  173

seq1  TAGATGTTTAAGTTATTTGTGCTTTTTATTTAGCTTCTGACGAGTGAACC  249
      |||||||||||||||||||||| ||||| ||||| |||||||||||||||
seq2  TAGATGTTTAAGTTATTTGTGC-TTTTAATTAGC-TCTGACGAGTGAACC  221

seq1  TGGGACCTCACACATAGGCCACAAGTGCAGCTCCAACCTTGTTCATGTTT  299
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGGGACCTCACACATAGGCCACAAGTGCAGCTCCAA-CTTGTTCATGTTT  270

seq1  TGAAATAAGACTGAAAAACCGTGAAGCACTTCTGTACTTGGGGACGTTAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAGACTGAAAAACCGTGAAGCACTTCTGTACTTGGGGACGTTAC  320

seq1  TGAGTCAGACACTGACATCTGTGTGGACAGGTTCTTGTGTATATAAACAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCAGACACTGACATCTGTGTGGACAGGTTCTTGTGTATATAAACAG  370

seq1  TTTGGCTAAAAATAACAGTATGAGAAACTCACATTGGCGTGTGTGGTAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTAAAAATAACAGTATGAGAAACTCACATTGGCGTGTGTGGTAAC  420

seq1  GTCATAGAGCTTCATCGCGGTTGCTACAGGCGGCGGAGTCCTTCTGTGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGAGCTTCATCGCGGTTGCTACAGGCGGCGGAGTCCTTCTGTGCT  470

seq1  GGCATACTGTCATGTTGGAGCGCCTGCACACATCTGGTGTCCAGGCACCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATACTGTCATGTTGGAGCGCCTGCACACATCTGGTGTCCAGGCACCA  520

seq1  TCTTTTCCTTCTCAGGCCCAGGAAGTATCCCTTCCTGTTCCTTCTTGTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTTCTCAGGCCCAGGAAGTATCCCTTCCTGTTCCTTCTTGTCA  570

seq1  AATGTTCCACTTTCGGCTAATTCTACATTTCCAACAGCAAGAAAATGGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCCACTTTCGGCTAATTCTACATTTCCAACAGCAAGAAAATGGAG  620

seq1  TAATGGTATTATTTATAACCCACCATGACCCCTCTGAGTCATGAAACAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTATTATTTATAACCCACCATGACCCCTCTGAGTCATGAAACAAT  670

seq1  GGGACGGTCTCTATGTGCTCCTAATGGCCTGTGACTAATTCCCTTATGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACGGTCTCTATGTGCTCCTAATGGCCTGTGACTAATTCCCTTATGAC  720

seq1  ATCAAGTCACACTGTGTGCCTGCCATGACTACCAGCTTCCACACAGCAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTCACACTGTGTGCCTGCCATGACTACCAGCTTCCACACAGCAAG  770

seq1  GAGCTGAAGACTGCCCAGAAGAGACAAAATCTCCCCGCTACCCGCTACCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAAGACTGCCCAGAAGAGACAAAATCTCCCCGCTACCCGCTACCC  820

seq1  GCTACCCGCTACCCGCTACCCGCTACCCGCAATGGCTCCTTTCTTGACTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCGCTACCCGCTACCCGCTACCCGCAATGGCTCCTTTCTTGACTA  870

seq1  AGTCTTCTGAGGACACCTGGGTTCCCTCACAGGGCAGACTCTCAGGTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCTGAGGACACCTGGGTTCCCTCACAGGGCAGACTCTCAGGTTTT  920

seq1  TCTGTTAGCTTTCTGTCATGGACGATACAAGTTGTGCATCAGTACATGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAGCTTTCTGTCATGGACGATACAAGTTGTGCATCAGTACATGGG  970

seq1  AAGTGTTTCTCACCTGCTGGTCTGTATGGAAGCAATAGGCGAGCCAGGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTCTCACCTGCTGGTCTGTATGGAAGCAATAGGCGAGCCAGGTG  1020

seq1  CCAATAGTGATGGAGAAGAAATACATAGGGGGCTCTGTGAGAATGTGCAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGTGATGGAGAAGAAATACATAGGGGGCTCTGTGAGAATGTGCAA  1070

seq1  AATACTCTGCTCCCTGTCCTGATGAGTCCATCTCCAAGGTGGAAGAATTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCTGCTCCCTGTCCTGATGAGTCCATCTCCAAGGTGGAAGAATTT  1120

seq1  AAACTTAAAGGAGAATTC  1167
      ||||||||||||||||||
seq2  AAACTTAAAGGAGAATTC  1138