BAC Information

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BAC

Clone NameB6Ng01-067C14
Chromosome3 (Build37)
Map Location 79,231,482 - 79,330,413
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741
Downstream geneLOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik, EG626797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067C14.bB6Ng01-067C14.g
ACCDH886136DH886137
length1,145249
definitionDH886136|Mus musculus domesticus DNA, BAC clone: B6Ng01-067C14, 5' end.DH886137|Mus musculus domesticus DNA, BAC clone: B6Ng01-067C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,231,482 - 79,232,639)(79,330,165 - 79,330,413)
sequence
gaattcatacctggtaaaacctggctaaaagaccaaagctctggaggaga
taggccttggggtgggctaaaccaatttctgttgctaaatggacatggtg
cccaactgccttctaaatatgactactcccagattaacgctactgtcaac
cttggccagataactcctttctgtagtgggccacagttaacgcagcaact
cacagctggccagatggctgggactaagtgagtgttaaatgttctcagcc
ctgcagagagcacctgtatcaactcttcctccaaggctcagggaatttca
ataaagagggagcagaaagaatttaagagtaggaagatggggagaggttc
tgtgaaatgctatcttctggacataccatagctgttgaacccttgtagtt
gctacaattatggtcacccacgcaagagccagccaacaagataagtcaac
agtttatcaggaggacataaaaatggatcggcggatgtcggaaggagatc
cgttgaggtcttaaggaagtcagaagggaaaaatgaggataatgggatga
aaatacattgtgtgcatgtatggaattgtttaaagaatatatgaaaagta
ttttaaaatccttattgatgaaaactatcaatataaagattagctataac
ataaaaaaaaaaaaatccacactacatagctgagttgattccccagaaaa
gtacacaaaaagcaaataaggaaaacatataaaaattaaattttctaata
cctgatgaataacaggaccagaaagaggccaggggaagtaaaaagagaaa
aaacagtaattcaagaaaatgttctttaagggaatggatgattccatatc
gaaaccattcattaaatgtaactgtgctgtgggggtcactgagagccatc
ctgagcaggaggagagtgcagaaagcatccagagggaagcaggcgcctcc
aggagatgggattggggcctgtcagagcagcgtgtcaccaccccatcttc
tgcagcatggtccctacagtagagatgacatacaggttagagttccatgt
tcagcggtatcacggaaggagctagaaagtgggcatttccaacctgttcc
actaaagctacatcaactattccctctggagtgagatgtacctag
aggttttcttttctgcaagagcaagtgctcctaaccactgagccatcttt
ccagccgaatatttgtttgtttctttagttggttgattttgttatagttg
ttttgtttgtttgtttgtttttgttgttgttgttgttgtaattgttttga
tacagtctttctatgtaatcctgcctggcctggaactcactgtgtatagc
cttggctaactccaaatttgtccttttacttgagtttcttcagtgtcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79231482_79232639
seq2: B6Ng01-067C14.b_47_1191

seq1  GAATTCATACCTGGTAAAACCTGGCTAAAAGACCAAAGCTCTGGAGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACCTGGTAAAACCTGGCTAAAAGACCAAAGCTCTGGAGGAGA  50

seq1  TAGGCCTTGGGGTGGGCTAAACCAATTTCTGTTGCTAAATGGACATGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTTGGGGTGGGCTAAACCAATTTCTGTTGCTAAATGGACATGGTG  100

seq1  CCCAACTGCCTTCTAAATATGACTACTCCCAGATTAACGCTACTGTCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTGCCTTCTAAATATGACTACTCCCAGATTAACGCTACTGTCAAC  150

seq1  CTTGGCCAGATAACTCCTTTCTGTAGTGGGCCACAGTTAACGCAGCAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCAGATAACTCCTTTCTGTAGTGGGCCACAGTTAACGCAGCAACT  200

seq1  CACAGCTGGCCAGATGGCTGGGACTAAGTGAGTGTTAAATGTTCTCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGGCCAGATGGCTGGGACTAAGTGAGTGTTAAATGTTCTCAGCC  250

seq1  CTGCAGAGAGCACCTGTATCAACTCTTCCTCCAAGGCTCAGGGAATTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGAGCACCTGTATCAACTCTTCCTCCAAGGCTCAGGGAATTTCA  300

seq1  ATAAAGAGGGAGCAGAAAGAATTTAAGAGTAGGAAGATGGGGAGAGGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAGGGAGCAGAAAGAATTTAAGAGTAGGAAGATGGGGAGAGGTTC  350

seq1  TGTGAAATGCTATCTTCTGGACATACCATAGCTGTTGAACCCTTGTAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATGCTATCTTCTGGACATACCATAGCTGTTGAACCCTTGTAGTT  400

seq1  GCTACAATTATGGTCACCCACGCAAGAGCCAGCCAACAAGATAAGTCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAATTATGGTCACCCACGCAAGAGCCAGCCAACAAGATAAGTCAAC  450

seq1  AGTTTATCAGGAGGACATAAAAATGGATCGGCGGATGTCGGAAGGAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATCAGGAGGACATAAAAATGGATCGGCGGATGTCGGAAGGAGATC  500

seq1  CGTTGAGGTCTTAAGGAAGTCAGAAGGGAAAAATGAGGATAATGGGATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGAGGTCTTAAGGAAGTCAGAAGGGAAAAATGAGGATAATGGGATGA  550

seq1  AAATACATTGTGTGCATGTATGGAATTGTTTAAAGAATATATGAAAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATTGTGTGCATGTATGGAATTGTTTAAAGAATATATGAAAAGTA  600

seq1  TTTTAAAATCCTTATTGATGAAAACTATCAATATAAAGATTAGCTATAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATCCTTATTGATGAAAACTATCAATATAAAGATTAGCTATAAC  650

seq1  ATAAAAAAAAAAAAATCCACACTACATAGCTGAGTTGATTCCCCAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAAAAAAATCCACACTACATAGCTGAGTTGATTCCCCAGAAAA  700

seq1  GTACACAAAAAGCAAATAAGGAAAACATATAAAAATTAAATTTTCTAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAAAAAGCAAATAAGGAAAACATATAAAAATTAAATTTTCTAATA  750

seq1  CCTGATGAATAACAGGACCAGAAAGAGGCCAGGGGAAGTAAAAAAGAGAA  800
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTGATGAATAACAGGACCAGAAAGAGGCCAGGGGAAGT-AAAAAGAGAA  799

seq1  AAAACAGTAATTCAAGAAAATGTTCTTTAAGGGAATGGATGATTCCATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTAATTCAAGAAAATGTTCTTTAAGGGAATGGATGATTCCATAT  849

seq1  CGAAACCATTCATTAAATGTAACTGTGCTGT-GGGGTCACTGAGAGCCAT  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CGAAACCATTCATTAAATGTAACTGTGCTGTGGGGGTCACTGAGAGCCAT  899

seq1  CCTGAGCAAGAGGAGAGTGCAGAAAGCATCCAGAGGGAAGCAGGCGCCTC  949
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCAGGAGGAGAGTGCAGAAAGCATCCAGAGGGAAGCAGGCGCCTC  949

seq1  CAGGAGATGGGATTGGGGCCTGTCAGAGCAGCGTGTCACCCACCCCATCT  999
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAGGAGATGGGATTGGGGCCTGTCAGAGCAGCGTGTCA-CCACCCCATCT  998

seq1  TCTGCAGCATGGTCCCTACAAGTAGAGAATGACATACAGGGTAGAGTTCC  1049
      ||||||||||||||||||| ||||||| |||||||||||| |||||||||
seq2  TCTGCAGCATGGTCCCTAC-AGTAGAG-ATGACATACAGGTTAGAGTTCC  1046

seq1  ATGTTCAGCCGGTAATCACGAGAGGAGCTAGAAAGTGGGCATGTCCAAAC  1099
      |||||||| |||| ||||||  |||||||||||||||||||| ||| |||
seq2  ATGTTCAG-CGGT-ATCACGGAAGGAGCTAGAAAGTGGGCATTTCC-AAC  1093

seq1  CTGTCCCACTAAAAGCTACCATCAAACATTATCCCTCTGGAAGTGAAGAT  1149
      |||| ||||| ||||||| ||||||  ||  ||||||||| |||| ||||
seq2  CTGTTCCACT-AAAGCTA-CATCAACTAT--TCCCTCTGG-AGTG-AGAT  1137

seq1  GTTACCTAG  1158
      | |||||||
seq2  G-TACCTAG  1145

seq1: chr3_79330165_79330413
seq2: B6Ng01-067C14.g_75_323 (reverse)

seq1  TCGGCACTGAGGAAACTCAAGTAAAAGGACAAATTTGGTGTTAGCCAAGG  50
      ||| |||||| ||||||||||||||||||||||||||| |||||||||||
seq2  TCGACACTGAAGAAACTCAAGTAAAAGGACAAATTTGGAGTTAGCCAAGG  50

seq1  CTATACACAGTGAGTTCCAGGCCAGGCAGGATTACATAGAAAGACTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACACAGTGAGTTCCAGGCCAGGCAGGATTACATAGAAAGACTGTAT  100

seq1  CAAAACAATTACAACAACAACAACAACAAAAACAAACAAACAAACAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAATTACAACAACAACAACAACAAAAACAAACAAACAAACAAAAC  150

seq1  AACTATAACAAAATCAACCAACTAAAGAAACAAACAAATATTCGGCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAACAAAATCAACCAACTAAAGAAACAAACAAATATTCGGCTGGA  200

seq1  AAGATGGCTCAGTGGTTAGGAGCACTTGCTCTTGCAGAAAAGAAAACCT  249
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGCTCAGTGGTTAGGAGCACTTGCTCTTGCAGAAAAGAAAACCT  249