BAC Information

Click to search

BAC

Clone NameB6Ng01-067C17
Chromosome3 (Build37)
Map Location 157,597,546 - 157,733,474
singlet/doubletdoublet
Overlap geneAnkrd13c, Sfrs11, Lrrc40
Upstream geneNegr1, LOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth
Downstream geneLrrc7, LOC100041008, LOC668905
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067C17.bB6Ng01-067C17.g
ACCDH886140DH886141
length1,138795
definitionDH886140|Mus musculus domesticus DNA, BAC clone: B6Ng01-067C17, 5' end.DH886141|Mus musculus domesticus DNA, BAC clone: B6Ng01-067C17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,732,322 - 157,733,474)(157,597,546 - 157,598,105)
sequence
gaattctcttgctaatacgttttatctcttatattgatttcccatcctat
ccccaagcaaagctctcacagaaaaacatgcagaggcctttgaggcagct
acagcttcaaggatttaacctttggcttcccatggcttcccgttccaagt
gttaaaaatatgaatgcatctatcagggatgtacagaagacaactttcaa
tttctatcagaaacacccagtgtatctgaggaaatacacatgtcctaaaa
tgagcctcaagtcagggtctaatggcaagatgagaggcacttaagcagat
ttcctcccagtaagtaaatggcaaagaggccaagcaagctctaagttctt
gaaagaagcagcaaagactcaggtggaaagcaaatgacatggctacttgt
atgggggaagcggcacttcagttcagacagtttgtgatcaagtatgaaaa
agcaagcaactgcatcaggcttgatgatgtatgcctatgattccagcaat
ggaaggtcaaaggcaggaggattacaagtttgaggccagtctgggctaca
tgggaagatcttgcaaggactaggattcaaggtgctaggttcaattccta
ggacctaaaaggcctactaaagcctttagaaatgctttagaaatagaatg
tagggataaagggaagaggactatgcagaaagcccaaccccaagattaaa
tgtttgttttaaactttaggttccatcatggcttggcattggcagctcct
tctactgcttcagtatccagaagcaacaggtctactgtcagaaattgaac
agactgacccaaatatgtgtaggattttttttttaaagaaaaactgatga
attcaggggaatgaaatagatattaaataaaatgtggttatcttaagtat
agttaggaaaacgatcaaatgtaattgatcttcttgcttagtctaataag
acacttaagcactaagctgcttgtattgtataaatgtattttggctgttc
ataggttattttctatattagaagtttattaaaacttttatgcacctcgg
ttttgtgtctttaagaacaccatttttcttgctagttgtttgcacagctg
gagtttgaggtgaatatgcttggcatgcagtcagctaa
gaattccaggacagtcagcactacacaaggaaaccctgcctcaaaacaaa
acaaaacaaaacaaaaaccaaacagacaaacaaacaaaacaaacaggggc
gggactgcattggtaaaaggcctgccacaaaagcctgaagatctgggtct
gagtccttaaattgggagtggcacatacttgaaatcccagagctgtggaa
gcaaagtcaggcatattcctgttccttgctagcagctagtttatcctact
gggctaatagctaatgagacatcttgtctcaacaatcagcatggctgctg
gagagatgactcagtagttaagaactctagctgctcttccagcagactga
gattagatttctatcacccacatagcaatttacaaccattcataactcca
gggtatctgacatcttctggccactatgtttactacgtgaacgtggtgtg
cagacatacacacaggtaaaacattcatatataaaaaagtaaataaatta
agcatgtgtggcacattcttcatcctagtactctgggggcagaagcaggc
aatgacttcaaggccagcctcatctatacagtgaattccaggccagtcaa
ggcttcttagtgaaccctgtctaaacaaacaaacaaacaaacaaaaacca
acaaaaccaaaccaaacaaaaacaaaaacaacaatcaaaaccccaataac
aacaacaaactaaaagataaattaataataaattagttagtaaaaaataa
catttgaaaaatgacaggtgaggaggtttgtagggggatttgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_157732322_157733474
seq2: B6Ng01-067C17.b_47_1184 (reverse)

seq1  TTAGCTGACTGCCATGCCCAGGCATTATTCCACCTCAAAACTCCAGCTGT  50
      ||||||||||| |||| ||| ||| |||| |||||| |||||||||||||
seq2  TTAGCTGACTG-CATG-CCAAGCA-TATT-CACCTC-AAACTCCAGCTGT  45

seq1  GCAAAACAAACTAGCAAAGAAAAATGTGTG-TCTAAAAGACACAAAACCT  99
      |||||   ||||||| |||||||||| ||| ||| |||||||||||||| 
seq2  GCAAA--CAACTAGC-AAGAAAAATG-GTGTTCTTAAAGACACAAAACC-  90

seq1  GAGTTGCAATAAAAGGTTTTAATAAACTTCTTAATATAGGAAAATAACCT  149
      ||| ||| |||||| ||||||||||||||| ||||||| |||||||||||
seq2  GAGGTGC-ATAAAA-GTTTTAATAAACTTC-TAATATA-GAAAATAACCT  136

seq1  ATGAACAGCCAAAAATACATTTATACAATACAAGCAGCTTAGTGCTTAAG  199
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAGCC-AAAATACATTTATACAATACAAGCAGCTTAGTGCTTAAG  185

seq1  TGTCTTATTAGACTAAGCAAGAAGATCAATTACATTTGATCGTTTTTCCT  249
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTCTTATTAGACTAAGCAAGAAGATCAATTACATTTGATCG-TTTTCCT  234

seq1  AACTATACTTAAGATAACCACATTTTATTTAATATCTATTTCATTCCCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATACTTAAGATAACCACATTTTATTTAATATCTATTTCATTCCCCT  284

seq1  GAATTCATCAGTTTTTCTTTAAAAAAAAAATCCTACACATATTTGGGTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGTTTTTCTTTAAAAAAAAAATCCTACACATATTTGGGTCA  334

seq1  GTCTGTTCAATTTCTGACAGTAGACCTGTTGCTTCTGGATACTGAAGCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTCAATTTCTGACAGTAGACCTGTTGCTTCTGGATACTGAAGCAG  384

seq1  TAGAAGGAGCTGCCAATGCCAAGCCATGATGGAACCTAAAGTTTAAAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGAGCTGCCAATGCCAAGCCATGATGGAACCTAAAGTTTAAAACA  434

seq1  AACATTTAATCTTGGGGTTGGGCTTTCTGCATAGTCCTCTTCCCTTTATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTAATCTTGGGGTTGGGCTTTCTGCATAGTCCTCTTCCCTTTATC  484

seq1  CCTACATTCTATTTCTAAAGCATTTCTAAAGGCTTTAGTAGGCCTTTTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATTCTATTTCTAAAGCATTTCTAAAGGCTTTAGTAGGCCTTTTAG  534

seq1  GTCCTAGGAATTGAACCTAGCACCTTGAATCCTAGTCCTTGCAAGATCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGGAATTGAACCTAGCACCTTGAATCCTAGTCCTTGCAAGATCTT  584

seq1  CCCATGTAGCCCAGACTGGCCTCAAACTTGTAATCCTCCTGCCTTTGACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTAGCCCAGACTGGCCTCAAACTTGTAATCCTCCTGCCTTTGACC  634

seq1  TTCCATTGCTGGAATCATAGGCATACATCATCAAGCCTGATGCAGTTGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTGCTGGAATCATAGGCATACATCATCAAGCCTGATGCAGTTGCT  684

seq1  TGCTTTTTCATACTTGATCACAAACTGTCTGAACTGAAGTGCCGCTTCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTCATACTTGATCACAAACTGTCTGAACTGAAGTGCCGCTTCCC  734

seq1  CCATACAAGTAGCCATGTCATTTGCTTTCCACCTGAGTCTTTGCTGCTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACAAGTAGCCATGTCATTTGCTTTCCACCTGAGTCTTTGCTGCTTC  784

seq1  TTTCAAGAACTTAGAGCTTGCTTGGCCTCTTTGCCATTTACTTACTGGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGAACTTAGAGCTTGCTTGGCCTCTTTGCCATTTACTTACTGGGA  834

seq1  GGAAATCTGCTTAAGTGCCTCTCATCTTGCCATTAGACCCTGACTTGAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCTGCTTAAGTGCCTCTCATCTTGCCATTAGACCCTGACTTGAGG  884

seq1  CTCATTTTAGGACATGTGTATTTCCTCAGATACACTGGGTGTTTCTGATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTAGGACATGTGTATTTCCTCAGATACACTGGGTGTTTCTGATA  934

seq1  GAAATTGAAAGTTGTCTTCTGTACATCCCTGATAGATGCATTCATATTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGAAAGTTGTCTTCTGTACATCCCTGATAGATGCATTCATATTTT  984

seq1  TAACACTTGGAACGGGAAGCCATGGGAAGCCAAAGGTTAAATCCTTGAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTTGGAACGGGAAGCCATGGGAAGCCAAAGGTTAAATCCTTGAAG  1034

seq1  CTGTAGCTGCCTCAAAGGCCTCTGCATGTTTTTCTGTGAGAGCTTTGCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCTGCCTCAAAGGCCTCTGCATGTTTTTCTGTGAGAGCTTTGCTT  1084

seq1  GGGGATAGGATGGGAAATCAATATAAGAGATAAAACGTATTAGCAAGAGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATAGGATGGGAAATCAATATAAGAGATAAAACGTATTAGCAAGAGA  1134

seq1  ATTC  1153
      ||||
seq2  ATTC  1138

seq1: chr3_157597546_157598105
seq2: B6Ng01-067C17.g_301_860

seq1  CTAGTTTATCCTACTGGGCTAATAGCTAATGAGACATCTTGTCTCAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTATCCTACTGGGCTAATAGCTAATGAGACATCTTGTCTCAACAA  50

seq1  TCAGCATGGCTGCTGGAGAGATGACTCAGTAGTTAAGAACTCTAGCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGGCTGCTGGAGAGATGACTCAGTAGTTAAGAACTCTAGCTGCT  100

seq1  CTTCCAGCAGACTGAGATTAGATTTCTATCACCCACATAGCAATTTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCAGACTGAGATTAGATTTCTATCACCCACATAGCAATTTACAA  150

seq1  CCATTCATAACTCCAGGGTATCTGACATCTTCTGGCCACTATGTTTACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCATAACTCCAGGGTATCTGACATCTTCTGGCCACTATGTTTACTA  200

seq1  CGTGAACGTGGTGTGCAGACATACACACAGGTAAAACATTCATATATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAACGTGGTGTGCAGACATACACACAGGTAAAACATTCATATATAAA  250

seq1  AAAGTAAATAAATTAAGCATGTGTGGCACATTCTTCATCCTAGTACTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAATAAATTAAGCATGTGTGGCACATTCTTCATCCTAGTACTCTG  300

seq1  GGGGCAGAAGCAGGCAATGACTTCAAGGCCAGCCTCATCTATACAGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGAAGCAGGCAATGACTTCAAGGCCAGCCTCATCTATACAGTGAA  350

seq1  TTCCAGGCCAGTCAAGGCTTCTTAGTGAACCCTGTCTAAACAAACAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGCCAGTCAAGGCTTCTTAGTGAACCCTGTCTAAACAAACAAACA  400

seq1  AACAAACAAAAACCAACAAAACCAAACCAAACAAAAACAAAAACAACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAAACCAACAAAACCAAACCAAACAAAAACAAAAACAACAAT  450

seq1  CAAAACCCCAATAACAACAACAAACTAAAAGATAAATTAATAATAAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCCCAATAACAACAACAAACTAAAAGATAAATTAATAATAAATTA  500

seq1  GTTAGTAAAAAATAACATTTGAAAAATGACAGGTGAGGAGGTTTGTAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTAAAAAATAACATTTGAAAAATGACAGGTGAGGAGGTTTGTAGGG  550

seq1  GGATTTGTTG  560
      ||||||||||
seq2  GGATTTGTTG  560