BAC Information

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BAC

Clone NameB6Ng01-067E15
Chromosome3 (Build37)5 (Build37)
Map Location 39,936,965 - 39,937,481152,035,843 - 152,036,709
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067E15.bB6Ng01-067E15.g
ACCDH886226DH886227
length947868
definitionDH886226|Mus musculus domesticus DNA, BAC clone: B6Ng01-067E15, 5' end.DH886227|Mus musculus domesticus DNA, BAC clone: B6Ng01-067E15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,936,965 - 39,937,481)(152,035,843 - 152,036,709)
sequence
gaattctcagaggagcaacaataaatgtactgtgcctgctctaccattct
ttgacatagactcaaaggactcagtatctcactccagagacactttgctc
agccatgctcactactgtgacttataacagacaccacaaaatcataggaa
cccaggactgcttacttgaaagatgccaggctgggattcttctaaattct
aacagcccactgtgtatgaggccatggctgggaaggatgactaagcactt
tggtgttgaaatcagccagatgctcttttacccatctatctgacactgga
actcttttttttttttttttttaaattttttattaggtattttcctcatt
tacatttccaatgctatcccaaaagtccccatacccaccctcccactccc
ctacccacccactccccctttttggccctggcgttcccctgtactggggc
atataaagtttgcgtgtccaatgggcctctctttccagtgatggctggct
aggccatcttttgatacatatgcagctagagacaagagctccggggtact
ggttagttcttattgttgttccacctatagggttgcagttccctttagct
ccttgggtacattctctatctcctccattggaggccctgtgattcatcca
atagctgactgtgagcatccacttctgtgtttgctaggcctcggcatagt
ctcacaagagagagctctatctgggtcctttcagcaaaatcttgctagtg
tatgcaatggtgtcagcatttggaagctgattatgggatggatccttgga
tatggcaatcactagatggtccatcctttcgtcacagctccaaatttgtc
tctgtaactccttccatgggtgttttgtcccaattctaagaaggggcaag
tgtccacacttgggtcttcgttcatcttgagttcatgctttagcaaa
gaattcctaagtctttctcaggcatttcctatatggacacttcggatcct
gagggcatcggggtggtgtgtggtcgtttgctttcaaaaactgttcacct
gtttccctccaaacttctagtctctaccactacggtaagctcttgcccag
tcgcgccacccttgccagccctcagccacgtggaaatgccaatctggggc
acagtcacagctacctttgcgcccgcccgagtggaggactctggtccgcg
cacaggccagctgtcaggcactgtgcccgatctgactggtcagaacctgc
acccagggccccgggacaccgacctgccagccgccgctcgcggacgttcc
tccacagcagatcccaggctctggcgctggagtcccgcagctgctcgctt
agcgatctccggagaggcgcgtacaccgctcttcgtgggctgctcatctc
agacgagtcctcatggcgcggggcagcctggtcaccgccactcaaaccgc
ctccgacgtttggacgctcggccacgcgggacccggtgcgcccgccaggc
gccctgagaggcggcctctgggttccgccagcccctctcccctctcctgc
tgcgtcctccctctttccttccctccctccccggctcctccctgcaccct
agcccaggctgacagccggctccaggtctttccctctcatcccaaagtta
gggactgtgccatagccttccgtttcctggttttccgcatcgcttaccaa
ccctactctgacacaagagctttgatacagcagcagttagtgcccaagac
tctcagagttcagaatttaaatcatttgcactcgagccaagctgaccttt
ccggggggtgggggttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_39936965_39937481
seq2: B6Ng01-067E15.b_405_735 (reverse)

seq1  GGCCTAGCAAACACAGAAGTGGAGTCTAACTTCTTGAGTTCTTTGTATAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATTGGATATTAGCCCTCTACTGGATGTATGATTGGTAAAGATCTTTTCCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  AAACTGTTGGTTGCCATTTTGTCAGACACAGTTTTATCAGCCTGAAATGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  GCAGTTTCCACATTCTAGGGATGATAGAAAAGAGTACCTGGCAGAGGATA  200
                                             |||  || | |
seq2  ---------------------------------------GGCCTAGCAAA  11

seq1  TAAAGAA------GAAAACAGTCAGCTAATGCATGGATCACAGGGCTCCC  244
       | ||||      |   ||||||||||| || ||| ||||||||||  ||
seq2  CACAGAAGTGGATGCTCACAGTCAGCTATTGGATGAATCACAGGGCCTCC  61

seq1  AATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCC  294
      |||||||||| ||||||| ||||||||||||||||||||| |||||||||
seq2  AATGGAGGAGATAGAGAATGTACCCAAGGAGCTAAAGGGAACTGCAACCC  111

seq1  TATAGGTGGAACAACATTATGAACTAACCAGTACTCCAGAGCTCTTGACT  344
      |||||||||||||||| || |||||||||||||| || ||||||||| ||
seq2  TATAGGTGGAACAACAATAAGAACTAACCAGTACCCCGGAGCTCTTGTCT  161

seq1  CTAGCTGCATATGTATCAAAAGATGGCCTAGGCGGCCATCACTGGAAAGA  394
      ||||||||||||||||||||||||||||||| | ||||||||||||||||
seq2  CTAGCTGCATATGTATCAAAAGATGGCCTAGCCAGCCATCACTGGAAAGA  211

seq1  GAGGCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCC  261

seq1  AGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTA  494
      |||||||||||||||||||||||||||||||||||  ||| |||||||||
seq2  AGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGT--GGGAGGGTGGGTA  309

seq1  TGGGGGACTTTTGGTATAGCATT  517
      | |||||||||||| ||||||||
seq2  T-GGGGACTTTTGGGATAGCATT  331

seq1: chr5_152035843_152036709
seq2: B6Ng01-067E15.g_67_934

seq1  GAATTCCTAAGTCTTTCTCAGGCATTTCCTATATGGACACTTCGGATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAGTCTTTCTCAGGCATTTCCTATATGGACACTTCGGATCCT  50

seq1  GAGGGCATCGGGGTGGTGTGTGGTCGTTTGCTTTCAAAAACTGTTCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCATCGGGGTGGTGTGTGGTCGTTTGCTTTCAAAAACTGTTCACCT  100

seq1  GTTTCCCTCCAAACTTCTAGTCTCTACCACTACGGTAAGCTCTTGCCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCTCCAAACTTCTAGTCTCTACCACTACGGTAAGCTCTTGCCCAG  150

seq1  TCGCGCCACCCTTGCCAGCCCTCAGCCACGTGGAAATGCCAATCTGGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCGCCACCCTTGCCAGCCCTCAGCCACGTGGAAATGCCAATCTGGGGC  200

seq1  ACAGTCACAGCTACCTTTGCGCCCGCCCGAGTGGAGGACTCTGGTCCGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCACAGCTACCTTTGCGCCCGCCCGAGTGGAGGACTCTGGTCCGCG  250

seq1  CACAGGCCAGCTGTCAGGCACTGTGCCCGATCTGACTGGTCAGAACCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCCAGCTGTCAGGCACTGTGCCCGATCTGACTGGTCAGAACCTGC  300

seq1  ACCCAGGGCCCCGGGACACCGACCTGCCAGCCGCCGCTCGCGGACGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGGCCCCGGGACACCGACCTGCCAGCCGCCGCTCGCGGACGTTCC  350

seq1  TCCACAGCAGATCCCAGGCTCTGGCGCTGGAGTCCCGCAGCTGCTCGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGCAGATCCCAGGCTCTGGCGCTGGAGTCCCGCAGCTGCTCGCTT  400

seq1  AGCGATCTCCGGAGAGGCGCGTACACCGCTCTTCGTGGGCTGCTCATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGATCTCCGGAGAGGCGCGTACACCGCTCTTCGTGGGCTGCTCATCTC  450

seq1  AGACGAGTCCTCATGGCGCGGGGCAGCCTGGTCACCGCCACTCAAACCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGAGTCCTCATGGCGCGGGGCAGCCTGGTCACCGCCACTCAAACCGC  500

seq1  CTCCGACGTTTGGACGCTCGGCCACGCGGGACCCGGTGCGCCCGCCAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGACGTTTGGACGCTCGGCCACGCGGGACCCGGTGCGCCCGCCAGGC  550

seq1  GCCCTGAGAGGCGGCCTCTGGGTTCCGCCAGCCCCTCTCCCCTCTCCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAGAGGCGGCCTCTGGGTTCCGCCAGCCCCTCTCCCCTCTCCTGC  600

seq1  TGCGTCCTCCCTCTTTCCTTCCCTCCCTCCCCGGCTCCTCCCTGCACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCCTCCCTCTTTCCTTCCCTCCCTCCCCGGCTCCTCCCTGCACCCT  650

seq1  AGCCCAGGCTGACAGCCGGCTCCAGGTCTTTCCCTCTCATCCCAAAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGCTGACAGCCGGCTCCAGGTCTTTCCCTCTCATCCCAAAGTTA  700

seq1  GGGACTGTGCCATAGCCTTCCGTTTCCTGGTTTTCCGCATCGCTTACCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGTGCCATAGCCTTCCGTTTCCTGGTTTTCCGCATCGCTTACCAA  750

seq1  CCCTACTCTGACACAAGAGCTTTGATACAGCAGCAGTTAGTGCCCAAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTCTGACACAAGAGCTTTGATACAGCAGCAGTTAGTGCCCAAGAC  800

seq1  TCTCAGAGTTCAGAATTTAAATCATTTGCACTCGAGCCAAGCTGACC-TT  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTCAGAGTTCAGAATTTAAATCATTTGCACTCGAGCCAAGCTGACCTTT  850

seq1  CCGGGGGGTGGGGGTTGG  867
      ||||||||||||||||||
seq2  CCGGGGGGTGGGGGTTGG  868