BAC Information

Click to search

BAC

Clone NameB6Ng01-067H07
Chromosome12 (Build37)3 (Build37)
Map Location 32,631,616 - 32,631,84374,881,964 - 74,882,561
singlet/doubletsingletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067H07.bB6Ng01-067H07.g
ACCDH886342DH886343
length679598
definitionDH886342|Mus musculus domesticus DNA, BAC clone: B6Ng01-067H07, 5' end.DH886343|Mus musculus domesticus DNA, BAC clone: B6Ng01-067H07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,631,616 - 32,631,843)(74,881,964 - 74,882,561)
sequence
gaattcatgaagttcttaggcaaatggatgatctgaaggatatcatcctg
agtgaggtaacccaatcacaaaagaagtcacttgatatgcactcactgat
aagtagatattagcccagaaacttagaatacctaagatacaatttgcaaa
acacaagaaaatcaagaagaaagaagaccaaagcatggatactgcattcc
tccttagaatagggaacaaaatacccatgaaaggagttacagaggcaaag
tttggagctgagaggaaatgatggatcatccagagactgctccaccaagg
gatccatcccataatcagccaccaaatgcagacactgttgcatataccag
caaaattttgctgaaaggacccttgatatagctgtctcttgggagactat
accagtacctggcaaatacagaagtggatgctcataatcatctattggat
ggaacacagggcccccaatggaggagctagagaaagtacccaagagctga
aggggtctgcaaccctataggtggaacaacaatatgaacttatcagtacc
cccagagatcctgtctctagctgcatatgcagaagatggcctagttgacc
ctcattgggtgcgaagccccttggtcttgcaaactttatatgccccagta
caggggccgtcaaggccaagaagtgggag
gaattcaaaaaaataggagaaaccacctcttttgagaaaaatgaaacaga
gaaaaatatagacccccaaaataacaaagactctgttgattcctgcatgt
cacttgggagcaagggttccttgccaaccatagattcatctacatctttc
atagaggagaattcatctcaagacaccaacacatcattgaaatgcagcaa
tcaaaatgagaggtcaaacttgggaaattcaaaaactgcaaaggaaccac
tggtaaatacctattatatttactgcattaatagtttataaggatattct
tgagaaaatgatgttatagcataatacatactaaaaggttattttctact
tagattaaagtactgccgcttaaggtgatagctaaagaatgactcatatc
gaaacaggcatttcttataagataaatgtcattttaacatgcatttttct
gtgacaaatgatactagagaaacacctcattgatatatcaagaataatgg
tgcttttgcaaataaatttacaattgcagaatagagtgtcattctgatat
atatatatatattatatataaaatgtttgtgtgtgtggtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631843
seq2: B6Ng01-067H07.b_461_728 (reverse)

seq1  CTCCCACTTCTTGGCCCTG------------------------------G  20
      |||||||||||||||| ||                              |
seq2  CTCCCACTTCTTGGCCTTGACGGCCCCTGTACTGGGGCATATAAAGTTTG  50

seq1  CAAGACCCATGGGCCTCTC----------TTTCCACT--GACTTCTGATA  58
      ||||||| | |||| || |            || |||  | | |||  | 
seq2  CAAGACCAAGGGGCTTCGCACCCAATGAGGGTCAACTAGGCCATCTTCTG  100

seq1  CATACGCAGCTAGAGACACGAGCTCCGGGGGTACTGGTCAGTTCATAATG  108
      |||| ||||||||||||| || ||| |||||||||| | |||||||| ||
seq2  CATATGCAGCTAGAGACAGGATCTCTGGGGGTACTGATAAGTTCATATTG  150

seq1  TTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTACTTTCT  158
      |||||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  TTGTTCCACCTATAGGGTTGCAGACCCCTTCAGCT-CTTGGGTACTTTCT  199

seq1  CTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTGACTGTGA  208
      ||| |||||||||||||| ||||||| ||| ||||||||| ||| | |||
seq2  CTAGCTCCTCCATTGGGGGCCCTGTGTTCC-ATCCAATAGATGATTATGA  248

seq1  GCATCCACTTCTGTGTTTGC  228
      |||||||||||||| |||||
seq2  GCATCCACTTCTGTATTTGC  268

seq1: chr3_74881964_74882561
seq2: B6Ng01-067H07.g_70_667 (reverse)

seq1  CACACACACACCACACACACAAACATTTTATATATAATATATATATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACCACACACACAAACATTTTATATATAATATATATATATAT  50

seq1  ATCAGAATGACACTCTATTCTGCAATTGTAAATTTATTTGCAAAAGCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAATGACACTCTATTCTGCAATTGTAAATTTATTTGCAAAAGCACC  100

seq1  ATTATTCTTGATATATCAATGAGGTGTTTCTCTAGTATCATTTGTCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTTGATATATCAATGAGGTGTTTCTCTAGTATCATTTGTCACAG  150

seq1  AAAAATGCATGTTAAAATGACATTTATCTTATAAGAAATGCCTGTTTCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCATGTTAAAATGACATTTATCTTATAAGAAATGCCTGTTTCGA  200

seq1  TATGAGTCATTCTTTAGCTATCACCTTAAGCGGCAGTACTTTAATCTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTCATTCTTTAGCTATCACCTTAAGCGGCAGTACTTTAATCTAAG  250

seq1  TAGAAAATAACCTTTTAGTATGTATTATGCTATAACATCATTTTCTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATAACCTTTTAGTATGTATTATGCTATAACATCATTTTCTCAAG  300

seq1  AATATCCTTATAAACTATTAATGCAGTAAATATAATAGGTATTTACCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCTTATAAACTATTAATGCAGTAAATATAATAGGTATTTACCAGT  350

seq1  GGTTCCTTTGCAGTTTTTGAATTTCCCAAGTTTGACCTCTCATTTTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTTTGCAGTTTTTGAATTTCCCAAGTTTGACCTCTCATTTTGATT  400

seq1  GCTGCATTTCAATGATGTGTTGGTGTCTTGAGATGAATTCTCCTCTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATTTCAATGATGTGTTGGTGTCTTGAGATGAATTCTCCTCTATGA  450

seq1  AAGATGTAGATGAATCTATGGTTGGCAAGGAACCCTTGCTCCCAAGTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTAGATGAATCTATGGTTGGCAAGGAACCCTTGCTCCCAAGTGAC  500

seq1  ATGCAGGAATCAACAGAGTCTTTGTTATTTTGGGGGTCTATATTTTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGAATCAACAGAGTCTTTGTTATTTTGGGGGTCTATATTTTTCTC  550

seq1  TGTTTCATTTTTCTCAAAAGAGGTGGTTTCTCCTATTTTTTTGAATTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATTTTTCTCAAAAGAGGTGGTTTCTCCTATTTTTTTGAATTC  598