BAC Information

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BAC

Clone NameB6Ng01-067N19
Chromosome16 (Build37)3 (Build37)
Map Location 61,274,795 - 61,275,23160,811,465 - 60,812,103
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170, LOC100043524
Downstream geneLOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067N19.bB6Ng01-067N19.g
ACCDH886616DH886617
length985639
definitionDH886616|Mus musculus domesticus DNA, BAC clone: B6Ng01-067N19, 5' end.DH886617|Mus musculus domesticus DNA, BAC clone: B6Ng01-067N19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,274,795 - 61,275,231)(60,811,465 - 60,812,103)
sequence
gaattcagtcagcgagaattttattgaggatttttgcatcgatattcata
agggaaattggtctgaagttatctttgttggatctttctgtggtttaggt
atcagagtaattgtggcttcatagaacaagttgggtagagttccctctac
ttctattttgtggaatagtttgtgcagaactgcaattagatcttctttga
aggtctgatagaactctgcactaaacccatctggtcctgggctttttttg
gctgggagactattaatgactgcttctatttctttaggggatatgggact
gtttagatcattaacctgatcttgatttagctttggtacctggtatctgt
ctaagaaacttgtccatttcatccaggttttccagttttgttgagtatag
ccttttgtagaaggatctgatggtgtctttaatgaatgtggctgcccttg
catttggagcgtagatattcagaattgagagttcctcttggaggatatta
cctttgatgagtatgaagtgtccttccttgtcttttttgataactttggg
ttgaaagtcgagtttattagatattagaatggctactgcagcttgtttct
tcagaccatttgcttggaaaattgttttccagcctttcactctgaggtag
tgtctgtcttttttcctgagatcggtttcctgtaatcagtagaatgttgg
gtcctatttgtgtagccagtctgttcgtctatgtcttttttattggggaa
ttgagtccattgacattaagagatattaaggaaaaataattgttgcttcc
ttttatttttgttgttagagttggcattctgttctcatggctgtcttctt
tttgctttgttgagggattactttcttgcttttctcgggcatagtttccg
tcttgtatttgttttttctgttatatcctttgaagggctggattctagga
aagatatgtgtgaattggttttgttgtgaatactt
gaattcaactatggacaggacgtagaagatgtgttactcgtaaatataca
ttgaagcttttcttctattggttgaatgtaatcattgtaatagtatttat
tgaagaggtttgtgggccttcagttgtacagattgaagatacagtgtact
agtgtaaattctatttattgcagtgtataatgttcaaatgtcacacgtat
attttacagtaatatataatgctagataaaatgagaattttatttaggag
gttttttctcagatattagtaactttggacttctaagaccagtttgtatt
tgtatctaaaatgatgaaaatgtggtttataacaagtgtttaattttctc
tagatttgaatttgcatgctttccttttgtgtggggctcttgctatacag
acatgatttggtgttagattattgtaagatttataacaagtataggatat
tttagacaggttatatattacatacattatatgtgtatatttatattata
gaaagtttgtgtgctattttcagaaagtttagaatattgctctaactatg
gttgcagcacccactgccaaaggctaaaggcttgtctcctttcaaaattg
atgatttagctgtctagtaggttgggtggtgtggatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_61274795_61275231
seq2: B6Ng01-067N19.b_615_1033 (reverse)

seq1  AAGTATTCCACAACAAAACCAAATTCACACATTATCTTTCCATGAATCCA  50
      ||||||| |||||||||||| |||||||||| |||||||||  |||||||
seq2  AAGTATT-CACAACAAAACC-AATTCACACA-TATCTTTCCTAGAATCCA  47

seq1  GCCCTTC-AAGGATAATAACAGAAAAAAAAAAAAAAAAAAAAACAATACA  99
      ||||||| |||||| ||||||||||||| |              ||||||
seq2  GCCCTTCAAAGGAT-ATAACAGAAAAAACA--------------AATACA  82

seq1  AGGACAGAAAACACATGCTAGA-AAAAGCAAGAAGGTAATTCCTCAACAA  148
      | ||| ||||    ||||  || ||||||||||| ||||| |||||||||
seq2  A-GACGGAAA--CTATGCCCGAGAAAAGCAAGAAAGTAATCCCTCAACAA  129

seq1  ACCTAAAAGAAGACAACCACAAGAACAAAATGCCAACTTTAGCAACAAAA  198
      | | ||||||||||| |||  |||||| |||||||||| || ||||||||
seq2  AGCAAAAAGAAGACAGCCATGAGAACAGAATGCCAACTCTAACAACAAAA  179

seq1  ATAACAGGAAGCAACAATTACCTTTCCTTAATATGTCTTAATATCAATGG  248
      |||| |||||||||||||||  |||||||||||| ||||||| |||||||
seq2  ATAAAAGGAAGCAACAATTATTTTTCCTTAATATCTCTTAATGTCAATGG  229

seq1  GCTCAACTCCCCAAT-AAAAAGACATAGACTAACAGACTGGCTACACAAA  297
       ||||| |||||||| |||||||||||||| |||||||||||||||||||
seq2  ACTCAATTCCCCAATAAAAAAGACATAGACGAACAGACTGGCTACACAAA  279

seq1  CAGGACCCAACATTTTGCTGCTTAGAGGAAACCCATCTCAGGGAAAAAGG  347
       ||||||||||||| | ||| ||| |||||||| |||||||| |||||| 
seq2  TAGGACCCAACATTCTACTGATTACAGGAAACCGATCTCAGGAAAAAAGA  329

seq1  TAGACATTACTTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATG  397
       ||||| ||| ||||| |||||||||||||||||||||||||||||||||
seq2  CAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATG  379

seq1  GTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCTAA  437
      |||||||||||||||||| |||||||||||||||||||||
seq2  GTCTGAAGAAACAAGCTGCAGTAGCCATTCTAATATCTAA  419

seq1: chr3_60811465_60812103
seq2: B6Ng01-067N19.g_68_706

seq1  GAATTCAACTATGGACAGGACGTAGAAGATGTGTTACTCGTAAATATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTATGGACAGGACGTAGAAGATGTGTTACTCGTAAATATACA  50

seq1  TTGAAGCTTTTCTTCTATTGGTTGAATGTAATCATTGTAATAGTATTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCTTTTCTTCTATTGGTTGAATGTAATCATTGTAATAGTATTTAT  100

seq1  TGAAGAGGTTTGTGGGCCTTCAGTTGTACAGATTGAAGATACAGTGTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGGTTTGTGGGCCTTCAGTTGTACAGATTGAAGATACAGTGTACT  150

seq1  AGTGTAAATTCTATTTATTGCAGTGTATAATGTTCAAATGTCACACGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAATTCTATTTATTGCAGTGTATAATGTTCAAATGTCACACGTAT  200

seq1  ATTTTACAGTAATATATAATGCTAGATAAAATGAGAATTTTATTTAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACAGTAATATATAATGCTAGATAAAATGAGAATTTTATTTAGGAG  250

seq1  GTTTTTTCTCAGATATTAGTAACTTTGGACTTCTAAGACCAGTTTGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTCTCAGATATTAGTAACTTTGGACTTCTAAGACCAGTTTGTATT  300

seq1  TGTATCTAAAATGATGAAAATGTGGTTTATAACAAGTGTTTAATTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTAAAATGATGAAAATGTGGTTTATAACAAGTGTTTAATTTTCTC  350

seq1  TAGATTTGAATTTGCATGCTTTCCTTTTGTGTGGGGCTCTTGCTATACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTGAATTTGCATGCTTTCCTTTTGTGTGGGGCTCTTGCTATACAG  400

seq1  ACATGATTTGGTGTTAGATTATTGTAAGATTTATAACAAGTATAGGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATTTGGTGTTAGATTATTGTAAGATTTATAACAAGTATAGGATAT  450

seq1  TTTAGACAGGTTATATATTACATACATTATATGTGTATATTTATATTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACAGGTTATATATTACATACATTATATGTGTATATTTATATTATA  500

seq1  GAAAGTTTGTGTGCTATTTTCAGAAAGTTTAGAATATTGCTCTAACTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTTGTGTGCTATTTTCAGAAAGTTTAGAATATTGCTCTAACTATG  550

seq1  GTTGCAGCACCCACTGCCAAAGGCTAAAGGCTTGTCTCCTTTCAAAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGCACCCACTGCCAAAGGCTAAAGGCTTGTCTCCTTTCAAAATTG  600

seq1  ATGATTTAGCTGTCTAGTAGGTTGGGTGGTGTGGATATA  639
      |||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTAGCTGTCTAGTAGGTTGGGTGGTGTGGATATA  639