BAC Information

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BAC

Clone NameB6Ng01-068N22
Chromosome3 (Build37)
Map Location 36,983,067 - 37,085,701
singlet/doubletdoublet
Overlap geneTenr, Il2
Upstream geneAcad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, LOC652987
Downstream geneIl21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068N22.bB6Ng01-068N22.g
ACCDH887337DH887338
length1,1151,055
definitionDH887337|Mus musculus domesticus DNA, BAC clone: B6Ng01-068N22, 5' end.DH887338|Mus musculus domesticus DNA, BAC clone: B6Ng01-068N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,084,575 - 37,085,701)(36,983,067 - 36,984,122)
sequence
gaattcattacctttctcttctagtttctggatcaagatgtatacagggt
cctgaccaccctaaagtctgaagaggaattcttcctgccttcttgtagct
tttgggttgctgtcagtctttgatatacatccccttccactgatggttgt
cctctggtatttgccacatcccacttcccatagctctccatgtaaagatg
gcagacacactggatcagggtgctggttctccagtgtgatctcaagtaat
tatgtgtggaaagcctgtttccaaacgaagtcacattctgaggttagggc
tccactgtgacttcctgggaggggtggggatacagtgggatcctcacctg
ggttaggcagtttgacactctgcactgatccacagtgagtctcttcagcc
tggacatctccttgtatcaaggcattgccttgggaactaccttatacatt
aaattaaataaataaaaatgatattggagacacttggactttgattgtaa
aaatggacatgcttaagataaatagtacatcgttcataattaagaaaaaa
attgaactcagcagatcacaacactgacttcatatggagcttccttgggt
acatgaataggttctcattgtaaatcagggagtctggtaggaaagtgagc
aatatattttaaaggataatatttattgtgcttttattattccaggtgca
ctcctaccccacccctgttattattatctgattctgtagtcacataagga
ccaagaggttaactgatttctaagattgcaaagctagtgagtctcagaat
tggacctggacaggcaggtgcacttcagagccgatgttcttaaccatact
ctaccctcccttgaaataaaagtatagaatttgtgaaaattgaacaatga
atcaaatgcttcttgatgggctttgatgggtaagagagaggccctcacta
aaagaaaaaaaattggatgacaatgtctacagcattacatcctcatgtga
gtaaacacctgagcatcatgggagatctgaagctcatgggagatctgagc
ttatgggagaaataagctttatgggaagcttgaagctcattgggccgaaa
gggctagttatctga
gaattctgtcttagagttttattgctgtgaagagacaccatgatcatggt
gtcatataaagaaaaacatttaattggagctggctttcagaggttttgtc
cattaacatcatggtaggaagcacggcagtgtgtaggcagacatgatact
gaaagaaccaagagttctacatcttgatccaaaggcagacaggaagagat
tctttccacactgggcagagcttgagcactaggagaccttaaagtctgtc
tatacagtgacttactttctctaacaaggccacacctcctaatagtacca
ctttccatgggccaaatatattcaaccccctagaaactcattatatagcc
aaggctgatcctaaactttttggcaagggtaagggagttgagatagtatc
ctactatatacccctgactgacgttgaacttgctatgtagacaagactgg
ttttgaactcatggaaatctgtctgcctctttctcccaagtgctggagtt
aaaagcatgtactaccgctaggtcttactatattaatggccataaaaatg
ttgataataggaaaattgtgctgaagcttagtgtgttggtaaattgttat
gcattacttttttgggatgatgaatccattccgacttttttctttgtgct
tgcatctgctcatattatcggaattaggtgtgtactggcaaattaaacct
ggtagagaacaatttttgagagcatgcacattttacttttaagaatttta
tttttattaaagaaaacttttttctctctctagacgccttaatccacatt
ctatttctgcgtttgaagccaatgaagagctgagtctccatgtggctgtt
gaaggcaaaatttatcttactgtttactgttctgcagacggggttaatag
agtaaacagtatgtcctcagtgacagctgacaagatgggaggtgcttggt
gtacagggagccttgctgagtcactttatacagccagtttatatcagcag
tatacttgtggtgagtttcagcaacatttggggatattttatggcggggg
ggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_37084575_37085701
seq2: B6Ng01-068N22.b_48_1162 (reverse)

seq1  TCAGATAACTAGCCCCTCTCGCCC-ATGATGCTTC-AGCTCTCCCATAAT  48
      ||||||||||||||| |   |||| |||| ||||| |||| |||||||| 
seq2  TCAGATAACTAGCCCTTTCGGCCCAATGA-GCTTCAAGCT-TCCCATAAA  48

seq1  GCTTCATCTCTCCCATAATGCTTCAGATCTCCCATGATGCTTCAGATCTC  98
      |||| || |||||||||| || ||||||||||||||| ||||||||||||
seq2  GCTT-ATTTCTCCCATAA-GC-TCAGATCTCCCATGA-GCTTCAGATCTC  94

seq1  CCATGATGCCTCAGGTGTTTACTTCACATGAGGATGTGAATGCTGTAGAC  148
      |||||||| ||||||||||||| |||||||||||||| ||||||||||||
seq2  CCATGATG-CTCAGGTGTTTAC-TCACATGAGGATGT-AATGCTGTAGAC  141

seq1  ATTTGTCATCCAATTTTTTTTTCTTTTTAGTGAGGGCCTCTCTCTTACCC  198
      | |||||||||||||||||||   ||||||||||||||||||||||||||
seq2  A-TTGTCATCCAATTTTTTTT--CTTTTAGTGAGGGCCTCTCTCTTACCC  188

seq1  ATCAAAGCCCATCAAAGAAGCATTTGATTCATTGTTCAATTTTCACAAAA  248
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  ATCAAAGCCCATC-AAGAAGCATTTGATTCATTGTTCAATTTTCAC-AAA  236

seq1  TTCTATACTTTTATTTCAAGGGAGGGTAGAGTATGGTTAAGAACATCGGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATACTTTTATTTCAAGGGAGGGTAGAGTATGGTTAAGAACATCGGC  286

seq1  TCTGAAGTGCACCTGCCTGTCCAGGTCCAATTCTGAGACTCACTAGCTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTGCACCTGCCTGTCCAGGTCCAATTCTGAGACTCACTAGCTTT  336

seq1  GCAATCTTAGAAATCAGTTAACCTCTTGGTCCTTATGTGACTACAGAATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTTAGAAATCAGTTAACCTCTTGGTCCTTATGTGACTACAGAATC  386

seq1  AGATAATAATAACAGGGGTGGGGTAGGAGTGCACCTGGAATAATAAAAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATAATAACAGGGGTGGGGTAGGAGTGCACCTGGAATAATAAAAGC  436

seq1  ACAATAAATATTATCCTTTAAAATATATTGCTCACTTTCCTACCAGACTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAATATTATCCTTTAAAATATATTGCTCACTTTCCTACCAGACTC  486

seq1  CCTGATTTACAATGAGAACCTATTCATGTACCCAAGGAAGCTCCATATGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTTACAATGAGAACCTATTCATGTACCCAAGGAAGCTCCATATGA  536

seq1  AGTCAGTGTTGTGATCTGCTGAGTTCAATTTTTTTCTTAATTATGAACGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTGTTGTGATCTGCTGAGTTCAATTTTTTTCTTAATTATGAACGA  586

seq1  TGTACTATTTATCTTAAGCATGTCCATTTTTACAATCAAAGTCCAAGTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTATTTATCTTAAGCATGTCCATTTTTACAATCAAAGTCCAAGTGT  636

seq1  CTCCAATATCATTTTTATTTATTTAATTTAATGTATAAGGTAGTTCCCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATATCATTTTTATTTATTTAATTTAATGTATAAGGTAGTTCCCAA  686

seq1  GGCAATGCCTTGATACAAGGAGATGTCCAGGCTGAAGAGACTCACTGTGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGCCTTGATACAAGGAGATGTCCAGGCTGAAGAGACTCACTGTGG  736

seq1  ATCAGTGCAGAGTGTCAAACTGCCTAACCCAGGTGAGGATCCCACTGTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGCAGAGTGTCAAACTGCCTAACCCAGGTGAGGATCCCACTGTAT  786

seq1  CCCCACCCCTCCCAGGAAGTCACAGTGGAGCCCTAACCTCAGAATGTGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCTCCCAGGAAGTCACAGTGGAGCCCTAACCTCAGAATGTGAC  836

seq1  TTCGTTTGGAAACAGGCTTTCCACACATAATTACTTGAGATCACACTGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTTGGAAACAGGCTTTCCACACATAATTACTTGAGATCACACTGGA  886

seq1  GAACCAGCACCCTGATCCAGTGTGTCTGCCATCTTTACATGGAGAGCTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGCACCCTGATCCAGTGTGTCTGCCATCTTTACATGGAGAGCTAT  936

seq1  GGGAAGTGGGATGTGGCAAATACCAGAGGACAACCATCAGTGGAAGGGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTGGGATGTGGCAAATACCAGAGGACAACCATCAGTGGAAGGGGA  986

seq1  TGTATATCAAAGACTGACAGCAACCCAAAAGCTACAAGAAGGCAGGAAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATCAAAGACTGACAGCAACCCAAAAGCTACAAGAAGGCAGGAAGA  1036

seq1  ATTCCTCTTCAGACTTTAGGGTGGTCAGGACCCTGTATACATCTTGATCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCTTCAGACTTTAGGGTGGTCAGGACCCTGTATACATCTTGATCC  1086

seq1  AGAAACTAGAAGAGAAAGGTAATGAATTC  1127
      |||||||||||||||||||||||||||||
seq2  AGAAACTAGAAGAGAAAGGTAATGAATTC  1115

seq1: chr3_36983067_36984122
seq2: B6Ng01-068N22.g_67_1121

seq1  GAATTCTGTCTTAGAGTTTTATTGCTGTGAAGAGACACCATGATCATGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTTAGAGTTTTATTGCTGTGAAGAGACACCATGATCATGGT  50

seq1  GTCATATAAAGAAAAACATTTAATTGGAGCTGGCTTTCAGAGGTTTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATAAAGAAAAACATTTAATTGGAGCTGGCTTTCAGAGGTTTTGTC  100

seq1  CATTAACATCATGGTAGGAAGCACGGCAGTGTGTAGGCAGACATGATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACATCATGGTAGGAAGCACGGCAGTGTGTAGGCAGACATGATACT  150

seq1  GAAAGAACCAAGAGTTCTACATCTTGATCCAAAGGCAGACAGGAAGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACCAAGAGTTCTACATCTTGATCCAAAGGCAGACAGGAAGAGAT  200

seq1  TCTTTCCACACTGGGCAGAGCTTGAGCACTAGGAGACCTTAAAGTCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCACACTGGGCAGAGCTTGAGCACTAGGAGACCTTAAAGTCTGTC  250

seq1  TATACAGTGACTTACTTTCTCTAACAAGGCCACACCTCCTAATAGTACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGTGACTTACTTTCTCTAACAAGGCCACACCTCCTAATAGTACCA  300

seq1  CTTTCCATGGGCCAAATATATTCAACCCCCTAGAAACTCATTATATAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATGGGCCAAATATATTCAACCCCCTAGAAACTCATTATATAGCC  350

seq1  AAGGCTGATCCTAAACTTTTTGGCAAGGGTAAGGGAGTTGAGATAGTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGATCCTAAACTTTTTGGCAAGGGTAAGGGAGTTGAGATAGTATC  400

seq1  CTACTATATACCCCTGACTGACGTTGAACTTGCTATGTAGACAAGACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATATACCCCTGACTGACGTTGAACTTGCTATGTAGACAAGACTGG  450

seq1  TTTTGAACTCATGGAAATCTGTCTGCCTCTTTCTCCCAAGTGCTGGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAACTCATGGAAATCTGTCTGCCTCTTTCTCCCAAGTGCTGGAGTT  500

seq1  AAAAGCATGTACTACCGCTAGGTCTTACTATATTAATGGCCATAAAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATGTACTACCGCTAGGTCTTACTATATTAATGGCCATAAAAATG  550

seq1  TTGATAATAGGAAAATTGTGCTGAAGCTTAGTGTGTTGGTAAATTGTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAATAGGAAAATTGTGCTGAAGCTTAGTGTGTTGGTAAATTGTTAT  600

seq1  GCATTACTTTTTTGGGATGATGAATCCATTCCGACTTTTTTCTTTGTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACTTTTTTGGGATGATGAATCCATTCCGACTTTTTTCTTTGTGCT  650

seq1  TGCATCTGCTCATATTATCGGAATTAGGTGTGTACTGGCAAATTAAACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTGCTCATATTATCGGAATTAGGTGTGTACTGGCAAATTAAACCT  700

seq1  GGTAGAGAACAATTTTTGAGAGCATGCACATTTTACTTTTAAGAATTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGAACAATTTTTGAGAGCATGCACATTTTACTTTTAAGAATTTTA  750

seq1  TTTTTATTAAAGAAAACTTTTTTCTCTCTCTAGACGCCTTAATCCACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTAAAGAAAACTTTTTTCTCTCTCTAGACGCCTTAATCCACATT  800

seq1  CTATTTCTGCGTTTGAAGCCAATGAAGAGCTGAGTCTCCATGTGGCTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTGCGTTTGAAGCCAATGAAGAGCTGAGTCTCCATGTGGCTGTT  850

seq1  GAAGGCAAAATTTATCTTACTGTTTACTGTTCTGCAGACGGGGTTAATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAAAATTTATCTTACTGTTTACTGTTCTGCAGACGGGGTTAATAG  900

seq1  AGTAAACAGTATGTCCTCAAGTGACAAGCTGACAAGATGGGAGGTGCTTG  950
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  AGTAAACAGTATGTCCTC-AGTGAC-AGCTGACAAGATGGGAGGTGCTTG  948

seq1  GTGTACAGGGAGCCTTGCTGAGTCACTTTATACAGCCAGTTTATATCAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACAGGGAGCCTTGCTGAGTCACTTTATACAGCCAGTTTATATCAGC  998

seq1  AGTATACTTGTTGGTGAGTTTCAGC-ACATTTGGGGATA-TTTAGTGCGG  1048
      |||||||||| |||||||||||||| ||||||||||||| ||||  ||||
seq2  AGTATACTTG-TGGTGAGTTTCAGCAACATTTGGGGATATTTTATGGCGG  1047

seq1  GGGGGGGG  1056
      ||||||||
seq2  GGGGGGGG  1055