BAC Information

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BAC

Clone NameB6Ng01-068O13
Chromosome3 (Build37)
Map Location 88,657,552 - 88,810,136
singlet/doubletdoublet
Overlap gene5830417I10Rik, Msto1, Dap3, Ash1l
Upstream geneSh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11
Downstream geneRusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068O13.bB6Ng01-068O13.g
ACCDH887365DH887366
length1,127747
definitionDH887365|Mus musculus domesticus DNA, BAC clone: B6Ng01-068O13, 5' end.DH887366|Mus musculus domesticus DNA, BAC clone: B6Ng01-068O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,657,552 - 88,658,702)(88,809,389 - 88,810,136)
sequence
gaattcaaaacctctggaagagcagtcagtgctcttaccactgagccatc
tctccagcccaagcaaggttctttatgtagctcatattctctctgtactt
ttgtggcctggaatgtgtgatcctcctgccttcttgtcccaaggtgctag
agatttgccactagatctggcagggatacttcttctctgtttcagttttt
taatctgaacaatgggaaaattaatagtctctatcaaataggttgccagg
atatgttttatgagtgtcagttttttctcttcttccttctctctcttttt
tttaaaaatggttttagagctttgttgtagaaaagcaggggaaagagaaa
aggtagaaagagagagagagagagaccagccatggccaaaaggagagtag
gggaaagggagagagaaaagaaaggctagagtaagagggagagagaaaga
gcgtttggttttttgtttgtttgtttttgtttttgttattttgagacagg
gtgtttctgtctagccttgactgtcttggaactctttctatagactaggc
tggcctcaaaatcagagatctgcctgcttttgtctctgtctatagagatc
agattaaaggtatgtgccagtacttcctggcttgtgttagctatcttgtt
ttgttttattcgagacaaggtctcactatttagctcttactggctcttct
ggaaatcactgtgtagaccaagctggcctctgcttcctagttctgggatc
gaaggtgctcactaccagtgcctagctgagtgttagctgttatgcctagt
tccatagtaccatttgccaacttcatgataaaccatcactgctgcatcat
gctgtttggttttctgagtcagacagcagccaggttggttttctttcact
gctggtttggaccgaagttcctagaggagtatttagagatcctgtgatgt
tctcttggttcatttgcagaagagcaagacagtgaagaaagtgataaaaa
gaaaaaactaaaagggtactagaggaacgagatgaaaggtccgagcagga
cgatgtgttgaccgaaactgatgacatgctggacgaccttggaggatggc
gcagcagcaactgacgcagtcaatgtc
gaattcactgtaaaggttatcctcctcccttagctgcctatgtcctagaa
ttaagtcatatacctgtggcttttgtttgtctatatgttcatgtgaatcc
aaacttacatttgtgtggggagtgaggggaaggaggaaggatgctaatct
tggggtttctcatgagatagccatcttattatttttaattggaaccaaac
atatatcttttttaaaaacattaaatgtggtgaaccactaagtcatttct
ctagctccaagacaaagaacttttctagggatggagattttaaaagttgg
actgagtacatttcacatcctgagagtgtatgaacgagggttggaagtta
cagcttaaaagtggatgtttgtttgtcaggctgacaagggcggtgttctg
aaggggttgagcatgcccgtaggagattctctttttaaaagaacttctgt
ttcattttgtatacatgatgtgcgtgtgtacatggaacagtgcatgcatg
gagatcacaggacgactttctgtcctcagcacttcctccactttgatgtg
gacttgggggctgagcccaggttgccaggatcaagcagcatctgctcacc
ggcggggccatctcttcagccctagcttgttttaataatcagagttataa
taaagggctaacaagttatccctgtattagtaggggttctctagagaaag
agaactactgattttaatgaggggggagaacacctccttgtatgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88657552_88658702
seq2: B6Ng01-068O13.b_47_1173

seq1  GAATTCAAAACCTCTGGAAGAGCAGTCAGTGCTCTTACCACTGAGCCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACCTCTGGAAGAGCAGTCAGTGCTCTTACCACTGAGCCATC  50

seq1  TCTCCAGCCCAAGCAAGGTTCTTTATGTAGCTCATATTCTCTCTGTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCCCAAGCAAGGTTCTTTATGTAGCTCATATTCTCTCTGTACTT  100

seq1  TTGTGGCCTGGAATGTGTGATCCTCCTGCCTTCTTGTCCCAAGGTGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCCTGGAATGTGTGATCCTCCTGCCTTCTTGTCCCAAGGTGCTAG  150

seq1  AGATTTGCCACTAGATCTGGCAGGGATACTTCTTCTCTGTTTCAGTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGCCACTAGATCTGGCAGGGATACTTCTTCTCTGTTTCAGTTTTT  200

seq1  TAATCTGAACAATGGGAAAATTAATAGTCTCTATCAAATAGGTTGCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGAACAATGGGAAAATTAATAGTCTCTATCAAATAGGTTGCCAGG  250

seq1  ATATGTTTTATGAGTGTCAGTTTTTTCTCTTCTTCCTTCTCTCTCTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTTATGAGTGTCAGTTTTTTCTCTTCTTCCTTCTCTCTCTTTTT  300

seq1  TTTAAAAATGGTTTTAGAGCTTTGTTGTAGAAAAGCAGGGGAAAGAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATGGTTTTAGAGCTTTGTTGTAGAAAAGCAGGGGAAAGAGAAA  350

seq1  AGGTAGAAAGAGAGAGAGAGAGAGACCAGCCATGGCCAAAAGGAGAGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAAAGAGAGAGAGAGAGAGACCAGCCATGGCCAAAAGGAGAGTAG  400

seq1  GGGAAAGGGAGAGAGAAAAGAAAGGCTAGAGTAAGAGGGAGAGAGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGGGAGAGAGAAAAGAAAGGCTAGAGTAAGAGGGAGAGAGAAAGA  450

seq1  GCGTTTGGTTTTTTGTTTGTTTGTTTTTGTTTTTGTTATTTTGAGACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTGGTTTTTTGTTTGTTTGTTTTTGTTTTTGTTATTTTGAGACAGG  500

seq1  GTGTTTCTGTCTAGCCTTGACTGTCTTGGAACTCTTTCTATAGACTAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTGTCTAGCCTTGACTGTCTTGGAACTCTTTCTATAGACTAGGC  550

seq1  TGGCCTCAAAATCAGAGATCTGCCTGCTTTTGTCTCTGTCTATAGAGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCAAAATCAGAGATCTGCCTGCTTTTGTCTCTGTCTATAGAGATC  600

seq1  AGATTAAAGGTATGTGCCAGTACTTCCTGGCTTGTGTTAGCTATCTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAAGGTATGTGCCAGTACTTCCTGGCTTGTGTTAGCTATCTTGTT  650

seq1  TTGTTTTATTCGAGACAAGGTCTCACTATTTAGCTCTTACTGGCTCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTATTCGAGACAAGGTCTCACTATTTAGCTCTTACTGGCTCTTCT  700

seq1  GGAAATCACTGTGTAGACCAAGCTGGCCTCTGCTTCCTAGTTCTGGGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCACTGTGTAGACCAAGCTGGCCTCTGCTTCCTAGTTCTGGGATC  750

seq1  GAAGGTGCTCACTACCAGTGCCTAGCTGAGTGTTAGCTGTTATGCCTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGCTCACTACCAGTGCCTAGCTGAGTGTTAGCTGTTATGCCTAGT  800

seq1  TCCATAGTACCA-TTGCCAACTTCATGATAAACCATCACTGCTGCATCAT  849
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCCATAGTACCATTTGCCAACTTCATGATAAACCATCACTGCTGCATCAT  850

seq1  GCTGTTTGGTTTTCTGAGTCAGACAGCAGCCAGGTTGGTTTTCTTTCACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTGGTTTTCTGAGTCAGACAGCAGCCAGGTTGGTTTTCTTTCACT  900

seq1  GCTGGTTTGGACCGAAGTTCCTAGAGGAGTATTTTAGGAGATCCTGGTGA  949
      ||||||||||||||||||||||||||||||||||   |||||||| ||||
seq2  GCTGGTTTGGACCGAAGTTCCTAGAGGAGTATTT--AGAGATCCT-GTGA  947

seq1  TGTTCTTCTTGGTTCATTTGCAGAAGAGCAAGACAGTGAAGAAAGTGATA  999
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTC-TCTTGGTTCATTTGCAGAAGAGCAAGACAGTGAAGAAAGTGATA  996

seq1  AAAAGAAAAAAACTAAAAAGGGTACTAAGAGGAAACGAGATGGAAAGGGT  1049
      ||||| |||||||| ||||||||||| ||||| |||||||||  || |||
seq2  AAAAG-AAAAAACT-AAAAGGGTACT-AGAGG-AACGAGATG--AAAGGT  1040

seq1  CCGGAGCAAGGGACGATGGTGTATGACCCGAAACTGGATGACATGCTGGA  1099
      || |||||  ||||||| |||| ||| |||||||| ||||||||||||||
seq2  CC-GAGCA--GGACGAT-GTGT-TGA-CCGAAACT-GATGACATGCTGGA  1083

seq1  CCGCACCTTGGAGGATGGCGCCAAGCAGCACAATCTGACGGCAGTCAATG  1149
      |   |||||||||||||||||  ||||||   | ||||| ||||||||||
seq2  C--GACCTTGGAGGATGGCGC--AGCAGC---AACTGAC-GCAGTCAATG  1125

seq1  TC  1151
      ||
seq2  TC  1127

seq1: chr3_88809389_88810136
seq2: B6Ng01-068O13.g_70_816 (reverse)

seq1  AAACATACATGGATGTGTTCTCCCCCCTCATT-AAATCAGTTAGTTCTCT  49
      ||||||||| ||| |||||||||||||||||| ||||||| |||||||||
seq2  AAACATACAAGGAGGTGTTCTCCCCCCTCATTAAAATCAG-TAGTTCTCT  49

seq1  TTCTCTAGAGAACCCTAACTAATACAGGGATAAACTTGTTAGCCCTTTAT  99
      |||||||||||||||  |||||||||||||| ||||||||||||||||||
seq2  TTCTCTAGAGAACCCCTACTAATACAGGGAT-AACTTGTTAGCCCTTTAT  98

seq1  TATAGCTCTGATTATTAAACCAAGCTTGGGCTGAAGAGATGGCCCCGCCG  149
      |||| |||||||||||||| |||||| |||||||||||||||||||||||
seq2  TATAACTCTGATTATTAAAACAAGCTAGGGCTGAAGAGATGGCCCCGCCG  148

seq1  GTGAGCAGATGCTGCTTGATCCTGGCAACCTGGGCTCAGCCCCCAAGTCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAGATGCTGCTTGATCCTGGCAACCTGGGCTCAGCCCCCAAGTCC  198

seq1  ACATCAAAGTGGAGGAAGTGCTGAGGACAGAAAGTCGTCCTGTGATCTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAAGTGGAGGAAGTGCTGAGGACAGAAAGTCGTCCTGTGATCTCC  248

seq1  ATGCATGCACTGTTCCATGTACACACGCACATCATGTATACAAAATGAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCACTGTTCCATGTACACACGCACATCATGTATACAAAATGAAA  298

seq1  CAGAAGTTCTTTTAAAAAGAGAATCTCCTACGGGCATGCTCAACCCCTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTCTTTTAAAAAGAGAATCTCCTACGGGCATGCTCAACCCCTTC  348

seq1  AGAACACCGCCCTTGTCAGCCTGACAAACAAACATCCACTTTTAAGCTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACCGCCCTTGTCAGCCTGACAAACAAACATCCACTTTTAAGCTGT  398

seq1  AACTTCCAACCCTCGTTCATACACTCTCAGGATGTGAAATGTACTCAGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCAACCCTCGTTCATACACTCTCAGGATGTGAAATGTACTCAGTC  448

seq1  CAACTTTTAAAATCTCCATCCCTAGAAAAGTTCTTTGTCTTGGAGCTAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTTAAAATCTCCATCCCTAGAAAAGTTCTTTGTCTTGGAGCTAGA  498

seq1  GAAATGACTTAGTGGTTCACCACATTTAATGTTTTTAAAAAAGATATATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGACTTAGTGGTTCACCACATTTAATGTTTTTAAAAAAGATATATG  548

seq1  TTTGGTTCCAATTAAAAATAATAAGATGGCTATCTCATGAGAAACCCCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTCCAATTAAAAATAATAAGATGGCTATCTCATGAGAAACCCCAA  598

seq1  GATTAGCATCCTTCCTCCTTCCCCTCACTCCCCACACAAATGTAAGTTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGCATCCTTCCTCCTTCCCCTCACTCCCCACACAAATGTAAGTTTG  648

seq1  GATTCACATGAACATATAGACAAACAAAAGCCACAGGTATATGACTTAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACATGAACATATAGACAAACAAAAGCCACAGGTATATGACTTAAT  698

seq1  TCTAGGACATAGGCAGCTAAGGGAGGAGGATAACCTTTACAGTGAATTC  748
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGACATAGGCAGCTAAGGGAGGAGGATAACCTTTACAGTGAATTC  747