BAC Information

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BAC

Clone NameB6Ng01-068P09
Chromosome3 (Build37)3 (Build37)
Map Location 18,117,806 - 18,118,66681,659,778 - 81,659,837
singlet/doubletsingletsinglet
Overlap geneCyp7b1
Upstream geneEG383936, LOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5
Downstream geneLOC622921, LOC100040153, Armc1, Mtfr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068P09.bB6Ng01-068P09.g
ACCDH887405DH887406
length1,061250
definitionDH887405|Mus musculus domesticus DNA, BAC clone: B6Ng01-068P09, 5' end.DH887406|Mus musculus domesticus DNA, BAC clone: B6Ng01-068P09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,117,806 - 18,118,666)(81,659,778 - 81,659,837)
sequence
gaattcttaactgaggaataccgaatggctgagaagcacctttaaaaatg
tttaacatctttagtcgtcagggaaatgcaaatcaaaacaaccttgagat
tccacctcacaccagtcagaatggctaagaccaaacactctggtgacagc
agatgctggcaagaatgtaaaggaagaggaacacttcattgcttgtggga
ctgcaagctggtacaaccactctggaaatcagtttggtggttcctcagaa
aattggacatagtactacctgaggacccagctatacaactcctgggcata
tacccagaagatattccaactggtaataaggacgcatgctctactatatt
catagaagccttatttataatagccagaagctggaaagaacccagaatgg
atacagaaaatgtagtacatttacacaatggagtactattcagctattaa
aaacaatgaatttatgaaattcttagacaaatggatggatctggaggata
tcatcctgagtgcggtaacccaatcacaaaagaacacacatgatatgtac
tcactgctaagtggatattagcccagaagcttggaatatccaagatacaa
ttcgcaaagctcatgaaactcaagaaggaagaccaaaatgtgtatacttt
ggtccttcttagaaggagtaacaaaaagcccatggaagaagttaaagaga
caaggtgtatgacatttccatagctgtactcagagacagtgggatgcaga
ttgctagcactgggaggtgtagaaatgagagatgctcgccaaaaagtaca
cagtttcagttagaaaataagcaatttctataagtctaacattattagca
gtatttaataatagggaattatatatacttgaaacttactgtgtaaaatc
taaatattattacattaagaactcatcatgaaggcaatgggcatgttaat
aagcatggttgtctaaacgattacaaactgcacatcactgtgtgacatca
atatatagtataatacctatttgtcttatatatatatgtgtgtgttgttg
tgtgtggtgtg
agtttgtttgttttttttaaagcacataaagttggaattgaaaaatagag
gaggctgggatggagttagagggggaaggaatggggattagatttgatca
atacacattgtaacaatacataaaattctcaaaaataaaaatattaaaaa
tctactaccagtatatacatatatatatacatacatacgatagatagata
gatagatagatagatagatagatagatagatagatagatagacagacaga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18117806_18118666
seq2: B6Ng01-068P09.b_258_1112

seq1  GCTGGTACAACCACTCTGGAAATCAGTTTGGTGGTTCCTCAGAAAATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTACAACCACTCTGGAAATCAGTTTGGTGGTTCCTCAGAAAATTGG  50

seq1  ACATAGTACTACCTGAGGACCCAGCTATACAACTCCTGGGCATATACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTACTACCTGAGGACCCAGCTATACAACTCCTGGGCATATACCCA  100

seq1  GAAGATATTCCAACTGGTAATAAGGACGCATGCTCTACTATATTCATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATATTCCAACTGGTAATAAGGACGCATGCTCTACTATATTCATAGA  150

seq1  AGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAATGGATACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAATGGATACAG  200

seq1  AAAATGTAGTACATTTACACAATGGAGTACTATTCAGCTATTAAAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAGTACATTTACACAATGGAGTACTATTCAGCTATTAAAAACAA  250

seq1  TGAATTTATGAAATTCTTAGACAAATGGATGGATCTGGAGGATATCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTATGAAATTCTTAGACAAATGGATGGATCTGGAGGATATCATCC  300

seq1  TGAGTGCGGTAACCCAATCACAAAAGAACACACATGATATGTACTCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCGGTAACCCAATCACAAAAGAACACACATGATATGTACTCACTG  350

seq1  CTAAGTGGATATTAGCCCAGAAGCTTGGAATATCCAAGATACAATTCGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGGATATTAGCCCAGAAGCTTGGAATATCCAAGATACAATTCGCA  400

seq1  AAGCTCATGAAACTCAAGAAGGAAGACCAAAATGTGTATACTTTGGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCATGAAACTCAAGAAGGAAGACCAAAATGTGTATACTTTGGTCCT  450

seq1  TCTTAGAAGGAGTAACAAAAAGCCCATGGAAGAAGTTAAAGAGACAAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAAGGAGTAACAAAAAGCCCATGGAAGAAGTTAAAGAGACAAGGT  500

seq1  GTATGACATTTCCATAGCTGTACTCAGAGACAGTGGGATGCAGATTGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGACATTTCCATAGCTGTACTCAGAGACAGTGGGATGCAGATTGCTA  550

seq1  GCACTGGGAGGTGTAGAAATGAGAGATGCTCGCCAAAAAGTACACAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGGAGGTGTAGAAATGAGAGATGCTCGCCAAAAAGTACACAGTTT  600

seq1  CAGTTAGAAAATAAGCAATTTCTATAAGTCTAACATTATTAGCAGTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGAAAATAAGCAATTTCTATAAGTCTAACATTATTAGCAGTATTT  650

seq1  AATAATAGGGAATTATATATACTTGAAACTTACTGTGTAAAATCTAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAGGGAATTATATATACTTGAAACTTACTGTGTAAAATCTAAATA  700

seq1  TTATTACATTAAGAACTCATCATGAAGGCAATGGGCATGTTAATAAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACATTAAGAACTCATCATGAAGGCAATGGGCATGTTAATAAGCAT  750

seq1  GGTTGTCTAAACGATTACAAAACTGCAACATCACTGTGTGACATCAAATA  800
      |||||||||||||||||| ||||||| |||||||||||||||||| ||||
seq2  GGTTGTCTAAACGATTAC-AAACTGC-ACATCACTGTGTGACATC-AATA  797

seq1  TATAGTATTAATTACCTATTTGTTCTTTATATATATATGTGTGTGTGTGT  850
      ||||||||  | |||||||||||   ||||||||||||||||||||   |
seq2  TATAGTAT--AATACCTATTTGT--CTTATATATATATGTGTGTGTTGTT  843

seq1  GTGTGT-GTGTG  861
      |||||| |||||
seq2  GTGTGTGGTGTG  855

seq1: chr3_81659778_81659837
seq2: B6Ng01-068P09.g_233_321 (reverse)

seq1  TCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTACCTATATATA  50
      |||||||||||||||||||||||||||||||||||||||| |||| ||| 
seq2  TCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC  50

seq1  TATGTATATA-----------------------------  60
      ||| ||| ||                             
seq2  TATCTATCTATCGTATGTATGTATATATATATGTATATA  89