BAC Information

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BAC

Clone NameB6Ng01-069L11
Chromosome3 (Build37)
Map Location 76,108,501 - 76,239,646
singlet/doubletdoublet
Overlap geneFstl5
Upstream geneWdr49, Pdcd10, Serpini1, Golph4
Downstream geneLOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069L11.bB6Ng01-069L11.g
ACCDH887939DH887940
length1,0701,091
definitionDH887939|Mus musculus domesticus DNA, BAC clone: B6Ng01-069L11, 5' end.DH887940|Mus musculus domesticus DNA, BAC clone: B6Ng01-069L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,238,561 - 76,239,646)(76,108,501 - 76,109,331)
sequence
gaattcaataagatttaagcaaccataaatgaagaattcattctggcaaa
agtgtctttatgaaaaaggacactatatcccctttccatctgtgtagaca
taactgcaataactataagtaattgttcaaattatttatgttagttttta
aatcagaaacattgttggaaaggcactcagtcaattcagtatttctcact
ggctgtattcctgtcatgccaatgaatggttgtagtttcagaagactcca
gctctgttgtactggcttgggttcctcataggaatacagtattcttaagt
tagatgtttctctttgaatatgccatatatttaagtttaatttcatcctg
ttcataggcacgcttttcattctatgttccctacttcaatgagcaacatc
attattcccaatctagaaatctgacattactcttcaatctcacattcccg
gattgtatattcaactacccactgagtcaagttggttatatgtgtagtta
ttttccagacaaggccttttctggcacatctcaatagctacttggacctg
gcctcaatacctttacaatgaggttgtcttatttctgttttatttgctgc
tatatatttttaataaaggtctttataaattaatgcttcagcatacaaaa
ggtattaaatagttccattaagtcatattttaacatagtgattgtgattt
ctgaggaagagaatttttcttatattatcattatgaaatctacattccat
tgaaagtatttactataaagagcaacaacattttgcatataatcatgcac
attttatatatttaagtagctattttgtcattttaaatttctaagaacat
ttatctaacatttttaagaagaacaaagaaaaaacctattaaacaatcat
tttaaatatgttgtagttggtatgtgatctattaaagtacttacttttgc
cactaggggaccatgaatttctttcattcttttatttttttttcctttac
aattaatgtataattttgtaaagctctatatattatcagcagtgagttta
taagatcatctacatacgtg
gaattcattgctgagtactactccattgtgtagatgtaccacattttctg
tatccattcctctgctgaggggcatctgggatctttccagcttctggatg
tacaggccagtgatagattctttgaaaatcagacatagtactaccgggag
atccagcaattctcctgggcatatcctcggaatatattccaacttgtaat
aaggacacatgctccactatgttcatagcagttctggatattttgattga
agttatttgcctaaagtttcctccagaacattcatttacatttttccttt
atcttccatctgctttctggtgttgatatcaaggtattactgggcctggt
ctgtgtttaaaaaaaaaaacagtaatttagcagtgttctttttattttat
ggaatattctgaggaccatttgttttaattactctttataaatcaggagg
aatttaataccaagttcatctgggcctggaatttatgattgttatagtat
agtttttcctttaaatagctgctgtaataccattgtttgttacatttttg
tgttttattttgtttatgacttcttatttaactttggtagatcacatgtg
tctaaatattcaactacttttatctttaagattttcaaattggttacaag
gtaaattttcaaagcaaggaataatggtcatttgactctcatcaatcagt
aaaatatcttccctttcatctttaaccttgttactgcagtcctctctttc
ttttggttagtttggctaagggattgccagttatatttttttataatgtt
ctttccttagttcttattatgtgcatctgggtgcaggtatgtgcaagtga
gtgctggtgcctaaaatgaccccctagcaatacaacaaacagtcatttat
ttcattcattgtttgcaattccttttgtttcatttcacttatgccctgat
ctcatcatttctgctgtatgctgctttagcgtttgctgcactgtctattt
ttattctaaaggccgtgaggaacattgcatgcatttcataatgcttgttt
tcatgttacacaaaccactccctatttcaaggactttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_76238561_76239646
seq2: B6Ng01-069L11.b_46_1115 (reverse)

seq1  CACGTATGTAAGATGATCTTATAAACTCACCTGCTGATAATTAATATAGA  50
      ||||||||| ||||||||||||||||||| |||||||||||  |||||||
seq2  CACGTATGT-AGATGATCTTATAAACTCA-CTGCTGATAAT--ATATAGA  46

seq1  GGCTTTTACCAAAAATTTAATACAATTAAATTTGTAAAGGAAAAAAAAAT  100
      |   |||||  ||||||  |||| |||||  |||||||||||||||||||
seq2  G--CTTTAC--AAAATT--ATAC-ATTAA--TTGTAAAGGAAAAAAAAAT  87

seq1  AAAAGAATTGAAAGAAATTCATGGTTCCCCTAGTGGCAAAAGTAAGTACT  150
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  AAAAGAA-TGAAAGAAATTCATGG-TCCCCTAGTGGCAAAAGTAAGTACT  135

seq1  TTAATAGATCACATACCAACTACAAACATATTTAAAATGATTGTTTAATA  200
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTAATAGATCACATACCAACTAC-AACATATTTAAAATGATTGTTTAATA  184

seq1  GGTTTTTTCTTTGTTCTTCTTAAAAATGTTAGATAAATGTTCTTAGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTCTTTGTTCTTCTTAAAAATGTTAGATAAATGTTCTTAGAAAT  234

seq1  TTAAAATGACAAAATAGCTACTTAAATATATAAAATGTGCATGATTATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGACAAAATAGCTACTTAAATATATAAAATGTGCATGATTATAT  284

seq1  GCAAAATGTTGTTGCTCTTTATAGTAAATACTTTCAATGGAATGTAGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATGTTGTTGCTCTTTATAGTAAATACTTTCAATGGAATGTAGATT  334

seq1  TCATAATGATAATATAAGAAAAATTCTCTTCCTCAGAAATCACAATCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATGATAATATAAGAAAAATTCTCTTCCTCAGAAATCACAATCACT  384

seq1  ATGTTAAAATATGACTTAATGGAACTATTTAATACCTTTTGTATGCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAAATATGACTTAATGGAACTATTTAATACCTTTTGTATGCTGAA  434

seq1  GCATTAATTTATAAAGACCTTTATTAAAAATATATAGCAGCAAATAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAATTTATAAAGACCTTTATTAAAAATATATAGCAGCAAATAAAAC  484

seq1  AGAAATAAGACAACCTCATTGTAAAGGTATTGAGGCCAGGTCCAAGTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAGACAACCTCATTGTAAAGGTATTGAGGCCAGGTCCAAGTAGC  534

seq1  TATTGAGATGTGCCAGAAAAGGCCTTGTCTGGAAAATAACTACACATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGATGTGCCAGAAAAGGCCTTGTCTGGAAAATAACTACACATATA  584

seq1  ACCAACTTGACTCAGTGGGTAGTTGAATATACAATCCGGGAATGTGAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTTGACTCAGTGGGTAGTTGAATATACAATCCGGGAATGTGAGAT  634

seq1  TGAAGAGTAATGTCAGATTTCTAGATTGGGAATAATGATGTTGCTCATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGTAATGTCAGATTTCTAGATTGGGAATAATGATGTTGCTCATTG  684

seq1  AAGTAGGGAACATAGAATGAAAAGCGTGCCTATGAACAGGATGAAATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGGAACATAGAATGAAAAGCGTGCCTATGAACAGGATGAAATTAA  734

seq1  ACTTAAATATATGGCATATTCAAAGAGAAACATCTAACTTAAGAATACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAATATATGGCATATTCAAAGAGAAACATCTAACTTAAGAATACTG  784

seq1  TATTCCTATGAGGAACCCAAGCCAGTACAACAGAGCTGGAGTCTTCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTATGAGGAACCCAAGCCAGTACAACAGAGCTGGAGTCTTCTGAA  834

seq1  ACTACAACCATTCATTGGCATGACAGGAATACAGCCAGTGAGAAATACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAACCATTCATTGGCATGACAGGAATACAGCCAGTGAGAAATACTG  884

seq1  AATTGACTGAGTGCCTTTCCAACAATGTTTCTGATTTAAAAACTAACATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACTGAGTGCCTTTCCAACAATGTTTCTGATTTAAAAACTAACATA  934

seq1  AATAATTTGAACAATTACTTATAGTTATTGCAGTTATGTCTACACAGATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTGAACAATTACTTATAGTTATTGCAGTTATGTCTACACAGATG  984

seq1  GAAAGGGGATATAGTGTCCTTTTTCATAAAGACACTTTTGCCAGAATGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGGATATAGTGTCCTTTTTCATAAAGACACTTTTGCCAGAATGAA  1034

seq1  TTCTTCATTTATGGTTGCTTAAATCTTATTGAATTC  1086
      ||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATTTATGGTTGCTTAAATCTTATTGAATTC  1070

seq1: chr3_76108501_76109331
seq2: B6Ng01-069L11.g_358_1158

seq1  TTTTTCCTTTATCTTCCATCTGCTTTCTGGTGTTGATATCAAGGTATTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTTTATCTTCCATCTGCTTTCTGGTGTTGATATCAAGGTATTAC  50

seq1  TGGGCCTGGTCTGTGTTTAAAAAAAAAAACAGTAATTTAGCAGTGTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTGGTCTGTGTTTAAAAAAAAAAACAGTAATTTAGCAGTGTTCTT  100

seq1  TTTATTTTATGGAATATTCTGAGGACCATTTGTTTTAATTACTCTTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTATGGAATATTCTGAGGACCATTTGTTTTAATTACTCTTTATA  150

seq1  AATCAGGAGGAATTTAATACCAAGTTCATCTGGGCCTGGAATTTATGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGAGGAATTTAATACCAAGTTCATCTGGGCCTGGAATTTATGATT  200

seq1  GTTATAGTATAGTTTTTCCTTTAAATAGCTGCTGTAATACCATTGTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGTATAGTTTTTCCTTTAAATAGCTGCTGTAATACCATTGTTTGT  250

seq1  TACATTTTTGTGTTTTATTTTGTTTATGACTTCTTATTTAACTTTGGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTTGTGTTTTATTTTGTTTATGACTTCTTATTTAACTTTGGTAG  300

seq1  ATCACATGTGTCTAAATATTCAACTACTTTTATCTTTAAGATTTTCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATGTGTCTAAATATTCAACTACTTTTATCTTTAAGATTTTCAAAT  350

seq1  TGGTTACAAGGTAAATTTTCAAAGCAAGGAATAATGGTCATTTGACTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACAAGGTAAATTTTCAAAGCAAGGAATAATGGTCATTTGACTCTC  400

seq1  ATCAATCAGTAAAATATCTTCCCTTTCATCTTTAACCTTGTTACTGCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCAGTAAAATATCTTCCCTTTCATCTTTAACCTTGTTACTGCAGT  450

seq1  CCTCTCTTTCTTTTGGTTAGTTTGGCTAAGGGATTGCCAGTTATATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTTCTTTTGGTTAGTTTGGCTAAGGGATTGCCAGTTATATTTTT  500

seq1  TTATAATGTTCTTTCCTTAGTTCTTATTATGTGCATCTGGGTGCAGGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGTTCTTTCCTTAGTTCTTATTATGTGCATCTGGGTGCAGGTAT  550

seq1  GTGCAAGTGAGTGCTGGTGCCTAAAATGACCCCCTAGCAATACAACAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGTGAGTGCTGGTGCCTAAAATGACCCCCTAGCAATACAACAAAC  600

seq1  AGTCATTTATTTCATTCATTGTTTGCAATTTCCTTTTGTTTTCATTTCAC  650
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  AGTCATTTATTTCATTCATTGTTTGCAA-TTCCTTTTG-TTTCATTTCAC  648

seq1  TTATGCCCTGATCTTCATCATTTCTTGCTGTATGCTGCTTTAGCGTTTTG  700
      ||||||||||||| |||||||||| |||||||||||||||||||| ||||
seq2  TTATGCCCTGATC-TCATCATTTC-TGCTGTATGCTGCTTTAGCG-TTTG  695

seq1  CTTGCACTTGTTTTTTTTTTTTTTTTTTTTTTTTCTTAAAGCCGTGAGGA  750
      | |||||             | | | ||||| |||| || ||||||||||
seq2  C-TGCAC-------------TGTCTATTTTTATTCTAAAGGCCGTGAGGA  731

seq1  ACATTGCATTGCATTTCATAAAATGCTTGTTTTTCAATGTATCAACAAAA  800
      |||||||| ||||||||||  ||||||||||||   |||| |  ||||| 
seq2  ACATTGCA-TGCATTTCAT--AATGCTTGTTTT--CATGT-TACACAAAC  775

seq1  CAAACTCACTTAATTTCAAAGGACTTTAAAA  831
      |  |||| ||  ||||| |||||||||||||
seq2  C--ACTCCCT--ATTTC-AAGGACTTTAAAA  801