BAC Information

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BAC

Clone NameB6Ng01-070B07
Chromosome3 (Build37)
Map Location 40,542,867 - 40,725,988
singlet/doubletdoublet
Overlap geneHspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik
Upstream geneLOC100041458, LOC100040882, Intu, Slc25a31
Downstream geneLarp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070B07.bB6Ng01-070B07.g
ACCDH888191DH888192
length1,186823
definitionDH888191|Mus musculus domesticus DNA, BAC clone: B6Ng01-070B07, 5' end.DH888192|Mus musculus domesticus DNA, BAC clone: B6Ng01-070B07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,542,867 - 40,544,068)(40,725,167 - 40,725,988)
sequence
gaattctcactccaatgagatttgagtctgtggtgcagtggtgcattcga
gtccctgtcacaggtgcaccctgacctgtaaactgttggagtggcactga
atcaatcactcctacactggccagttcagagttgctcaggagctagtgca
agatagtgtgcagcaatagaagactgaacaaggacaaggttaagtcagtt
tgtggtagttcctacccagaatggatgtttcctactctatcccatagaga
ttgtgcaaacaatatgtgtttgtgagactttctgtattagtcagagttct
ctagaggaacaaaactgatcgaatgaatatagataggatttatgagtagc
ttactactatttatgagtagctagtccaaaaatggctatgtaccgacaga
aagtctaagactccagtagttgttaaattcatgtctcagctactctttac
tatgccccagagtcctaaacaagtaggttctaatgccaatgaaggatagt
tatttaaatggaggatagtgacttgtattctgcttatattagaagaaagc
tgatctacctgccagtttttaataagatttaatattatcagttttaaaaa
taattttgtgtattctcagttttcttgttgaaataagatatggcagatct
gaattattgaagttggtgccagtgaaaagagcagaaactgggatgttccg
tttaaatgctaacagtgcaacctattacacattagactctctgcacacac
aaatcccacccctgttatcaatgcttatttgagtgaagttgctgaagagt
ggcatagtaataatctttggtatttgaaacttgttgacaatgggatattt
gatttacacagtaaagaacagtgaagtattttatcccttctaaggaattt
tggttttgtcagtaacaaaagcctaaatggaagccttgactgaagagagt
gaaatgcagcttttatcacagtatgctttgttccatttttctactgatat
ggaaaaatacgacttagacgatttgctatctcatagacatgctacatagc
tagtttgatgccaatgttctctatggatgaaaatccttataccctaggtt
attatccgaaggtatttttctggactcatcattacatcggggttgtcagt
aagaatgaacttatatttgtgaaaattcacctagca
gaattctcctaaagagaagcctggtctctgcaaccagaggcttggtagat
agcaggtgttaaactgtaggttggctgaggttctgattccaaactgctat
ctcctcacagaactaatgtaagaggcatcaactaaataatcattacgtgc
atttgtgagcattttgacaagatttcattggaccgctgaagcaggagcag
ggttcccgccaggctgggctccacagtgaagccctgtttcaataatgtta
acaagaacaaaccgtatgctctcctccatcaaaattgatcacagtccatt
tgaaaagaccccactttctttgttttctgttcttaagttagttttctatc
tctcagtacaaaatttattttggccttgcatggaaatgacaaattctgag
gttctgcttcctgttaccgcccggttctcttagtagaatacactagtgtg
tgaggctctgagacaagggtatttagggtggacctggtccatctattttc
ttttgtagtctttgtttacttactttggatgtaaacagatttaagatgag
tttttaaaggagagaagcaggacaagacaatccatggctgtaatcccatc
acgtgggaggttcaagtaggccagtgtggactcctgagtgaggcatctca
ttcagttcccacctccctgaccataaccaaagcaagcaagagcagtaaac
tgattaaaagatttaaactgcaagctgtttgtactcctgctgaatactct
aaaacaaacaaacaaacaaactggactactggttttcaggactatggatc
aagtgtggggttgggggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_40542867_40544068
seq2: B6Ng01-070B07.b_46_1231

seq1  GAATTCTCACTCCAATGAGATTTGAGTCTGTGGTGCAGTGGTGCATTCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTCCAATGAGATTTGAGTCTGTGGTGCAGTGGTGCATTCGA  50

seq1  GTCCCTGTCACAGGTGCACCCTGACCTGTAAACTGTTGGAGTGGCACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGTCACAGGTGCACCCTGACCTGTAAACTGTTGGAGTGGCACTGA  100

seq1  ATCAATCACTCCTACACTGGCCAGTTCAGAGTTGCTCAGGAGCTAGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCACTCCTACACTGGCCAGTTCAGAGTTGCTCAGGAGCTAGTGCA  150

seq1  AGATAGTGTGCAGCAATAGAAGACTGAACAAGGACAAGGTTAAGTCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTGTGCAGCAATAGAAGACTGAACAAGGACAAGGTTAAGTCAGTT  200

seq1  TGTGGTAGTTCCTACCCAGAATGGATGTTTCCTACTCTATCCCATAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTAGTTCCTACCCAGAATGGATGTTTCCTACTCTATCCCATAGAGA  250

seq1  TTGTGCAAACAATATGTGTTTGTGAGACTTTCTGTATTAGTCAGAGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAAACAATATGTGTTTGTGAGACTTTCTGTATTAGTCAGAGTTCT  300

seq1  CTAGAGGAACAAAACTGATCGAATGAATATAGATAGGATTTATGAGTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGAACAAAACTGATCGAATGAATATAGATAGGATTTATGAGTAGC  350

seq1  TTACTACTATTTATGAGTAGCTAGTCCAAAAATGGCTATGTACCGACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTACTATTTATGAGTAGCTAGTCCAAAAATGGCTATGTACCGACAGA  400

seq1  AAGTCTAAGACTCCAGTAGTTGTTAAATTCATGTCTCAGCTACTCTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAAGACTCCAGTAGTTGTTAAATTCATGTCTCAGCTACTCTTTAC  450

seq1  TATGCCCCAGAGTCCTAAACAAGTAGGTTCTAATGCCAATGAAGGATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCCAGAGTCCTAAACAAGTAGGTTCTAATGCCAATGAAGGATAGT  500

seq1  TATTTAAATGGAGGATAGTGACTTGTATTCTGCTTATATTAGAAGAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAATGGAGGATAGTGACTTGTATTCTGCTTATATTAGAAGAAAGC  550

seq1  TGATCTACCTGCCAGTTTTTAATAAGATTTAATATTATCAGTTTTAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTACCTGCCAGTTTTTAATAAGATTTAATATTATCAGTTTTAAAAA  600

seq1  TAATTTTGTGTATTCTCAGTTTTCTTGTTGAAATAAGATATGGCAGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGTGTATTCTCAGTTTTCTTGTTGAAATAAGATATGGCAGATCT  650

seq1  GAATTATTGAAGTTGGTGCCAGTGAAAAGAGCAGAAACTGGGATGTTCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTGAAGTTGGTGCCAGTGAAAAGAGCAGAAACTGGGATGTTCCG  700

seq1  TTTAAATGCTAACAGTGCAACCTATTACACATTAGACTCTCTGCACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGCTAACAGTGCAACCTATTACACATTAGACTCTCTGCACACAC  750

seq1  AAATCCCACCCCTGTTATCAATGCTTATTTGAGTGAAGTTGCTGAAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCACCCCTGTTATCAATGCTTATTTGAGTGAAGTTGCTGAAGAGT  800

seq1  GGCATAGTAATAATCTTTGGTATTTGAAACTTGTTGACAATGGGATATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGTAATAATCTTTGGTATTTGAAACTTGTTGACAATGGGATATTT  850

seq1  GATTTACACAGTAAAGAACAGTGAAGTATTTTATCCCTTCTAAGGAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACACAGTAAAGAACAGTGAAGTATTTTATCCCTTCTAAGGAATTT  900

seq1  TGGTTTTGTCAGTAACAAAAGCCTAAATGGAAGCCTTGACTGAAGAGAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGTCAGTAACAAAAGCCTAAATGGAAGCCTTGACTGAAGAGAGT  950

seq1  GAAATGCAGCTTTTATCACAGTTATGCTTTGTTCCATTTTTCTACTGATA  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAAATGCAGCTTTTATCACAG-TATGCTTTGTTCCATTTTTCTACTGATA  999

seq1  TGGAAAAATACGACTTAGGACGATTTGCTATCTCATAGACAATGCTACAT  1050
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  TGGAAAAATACGACTTA-GACGATTTGCTATCTCATAGAC-ATGCTACAT  1047

seq1  AGCTAAGTTTTGATGCCAAAATGTTCTCTATGGATGAAAAATCCTTATAC  1100
      |||||   |||||||||  ||||||||||||||||| |||||||||||||
seq2  AGCTA--GTTTGATGCC--AATGTTCTCTATGGATG-AAAATCCTTATAC  1092

seq1  CCTAGGGTTACTATCCAAAAGTA-TTTTCTGAACTCATTCATTACATAAG  1149
      |||| ||||| ||||| || ||| ||||||| ||||| |||||||||  |
seq2  CCTA-GGTTATTATCCGAAGGTATTTTTCTGGACTCA-TCATTACAT-CG  1139

seq1  GGGTTGTCAGTAAGGATGAACTTAAATAATTTGTGGAAAATATTCACCTA  1199
      |||||||||||||| |||||||||    |||||||   || |||||||||
seq2  GGGTTGTCAGTAAGAATGAACTTA---TATTTGTG---AAAATTCACCTA  1183

seq1  GCA  1202
      |||
seq2  GCA  1186

seq1: chr3_40725167_40725988
seq2: B6Ng01-070B07.g_66_888 (reverse)

seq1  -TCCCCCCCCCAACCCCACACTTGATCCATAGTCCTGAAAACCAGTAGTC  49
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCCCCAACCCCACACTTGATCCATAGTCCTGAAAACCAGTAGTC  50

seq1  CAGTTTGTTTGTTTGTTTGTTTTAGAGTATTCAGCAGGAGTACAAACAGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTTTGTTTGTTTGTTTTAGAGTATTCAGCAGGAGTACAAACAGC  100

seq1  TTGCAGTTTAAATCTTTTAATCAGTTTACTGCTCTTGCTTGCTTTGGTTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTTAAATCTTTTAATCAGTTTACTGCTCTTGCTTGCTTTGGTTA  150

seq1  TGGTCAGGGAGGTGGGAACTGAATGAGATGCCTCACTCAGGAGTCCACAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGGGAGGTGGGAACTGAATGAGATGCCTCACTCAGGAGTCCACAC  200

seq1  TGGCCTACTTGAACCTCCCACGTGATGGGATTACAGCCATGGATTGTCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTACTTGAACCTCCCACGTGATGGGATTACAGCCATGGATTGTCTT  250

seq1  GTCCTGCTTCTCTCCTTTAAAAACTCATCTTAAATCTGTTTACATCCAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCTTCTCTCCTTTAAAAACTCATCTTAAATCTGTTTACATCCAAA  300

seq1  GTAAGTAAACAAAGACTACAAAAGAAAATAGATGGACCAGGTCCACCCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTAAACAAAGACTACAAAAGAAAATAGATGGACCAGGTCCACCCTA  350

seq1  AATACCCTTGTCTCAGAGCCTCACACACTAGTGTATTCTACTAAGAGAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCTTGTCTCAGAGCCTCACACACTAGTGTATTCTACTAAGAGAAC  400

seq1  CGGGCGGTAACAGGAAGCAGAACCTCAGAATTTGTCATTTCCATGCAAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCGGTAACAGGAAGCAGAACCTCAGAATTTGTCATTTCCATGCAAGG  450

seq1  CCAAAATAAATTTTGTACTGAGAGATAGAAAACTAACTTAAGAACAGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATAAATTTTGTACTGAGAGATAGAAAACTAACTTAAGAACAGAAA  500

seq1  ACAAAGAAAGTGGGGTCTTTTCAAATGGACTGTGATCAATTTTGATGGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAAGTGGGGTCTTTTCAAATGGACTGTGATCAATTTTGATGGAG  550

seq1  GAGAGCATACGGTTTGTTCTTGTTAACATTATTGAAACAGGGCTTCACTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCATACGGTTTGTTCTTGTTAACATTATTGAAACAGGGCTTCACTG  600

seq1  TGGAGCCCAGCCTGGCGGGAACCCTGCTCCTGCTTCAGCGGTCCAATGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCCAGCCTGGCGGGAACCCTGCTCCTGCTTCAGCGGTCCAATGAA  650

seq1  ATCTTGTCAAAATGCTCACAAATGCACGTAATGATTATTTAGTTGATGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTCAAAATGCTCACAAATGCACGTAATGATTATTTAGTTGATGCC  700

seq1  TCTTACATTAGTTCTGTGAGGAGATAGCAGTTTGGAATCAGAACCTCAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACATTAGTTCTGTGAGGAGATAGCAGTTTGGAATCAGAACCTCAGC  750

seq1  CAACCTACAGTTTAACACCTGCTATCTACCAAGCCTCTGGTTGCAGAGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTACAGTTTAACACCTGCTATCTACCAAGCCTCTGGTTGCAGAGAC  800

seq1  CAGGCTTCTCTTTAGGAGAATTC  822
      |||||||||||||||||||||||
seq2  CAGGCTTCTCTTTAGGAGAATTC  823