BAC Information

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BAC

Clone NameB6Ng01-070L15
Chromosome3 (Build37)
Map Location 145,606,963 - 145,608,121
singlet/doubletsinglet
Overlap gene2410004B18Rik
Upstream geneClca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10
Downstream geneSyde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070L15.bB6Ng01-070L15.g
ACCDH888638DH888639
length1,1581,158
definitionDH888638|Mus musculus domesticus DNA, BAC clone: B6Ng01-070L15, 5' end.DH888639|Mus musculus domesticus DNA, BAC clone: B6Ng01-070L15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactttttttatttaaaacctgtacgtatttacaactctaatggt
gacctgtgattgtgaactgacagtacttggaagcattctggttatcacaa
aattggtgacaggctttgagagtttgtcacatggacatgccaatgttcta
tgaaccttttataaaggaatatatttttaaagtaaatatattgtattgta
ctgtgaacttgtgggtgcttttcattagtatctgtacagtgtaaatagat
gatcatggaaataaaattacttaatccaaccttgttattactgaatgcca
ctaacataagtatttgtgacaggcagcctgcttgccctgtgacgttttga
ttcacagtggggattagcatgtagggagagcctcccatgctcgggtgcct
tgtgcatacttctctcctacagtcctgggaggaaagcagacgtgagcgtc
ctcaggtttgtggtgagagcttgaggaactgggcagaggggtacacagca
gtgagtgaagaggagcggtcacgcaggactgactccagtcagatgaagcc
acctgtcactcgtcagacttcagtcgtttgccaagaacattatcatctct
gccatgtgcacttgtattagggaggtctcctactctgattctgcagctgc
actgataaatgccttatagtgtgagtataagtattcatttcttcattagg
tagactgaagatgaggctcctctgtgaaagatgagcaaattcagaaaaga
acataaggtaaccagttaaatttgagtctgtctgagtatatgtgatataa
gagacacattaaaaaccatctgaaattctaatttaacttagcatcttgtt
tatttgggggtctggggtgaagcctaaaaccatgtccatgctaggcgaaa
gccatactaaactatacatctgtcctctggcacctagggctttcctctat
ccgtccctatgttaatgctttgaatatagcaagcaaagcaaaatgaacct
ccttttactctgggactctattcttttctggtctcttcagctttgctgag
gcgggcacacactgttctcttactctttctcacatgcagaaacgctgctg
gtatgggggatgcttccaggttcccacacaggtgtcaagccacgccatct
cttccttc
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatc
cttaatcatcagggaaatgcaaatcaaagcaaccctgagattccacttta
ctccagtcagaatggctaagatcaaaaactcaggtgacagtagatgctgg
tgaggatgtgaagaaatcccattgttggtgggattgccagcttgtacaac
cactctggaaatcagtctggcggttcctcagaaaattggacatagtaccc
ccggaggatcccgcaatacctctcctgggcatatatccagaagatgtccc
aaccggtaagaaggacacatgctccactatgttcaagcagccttatttat
aatagccagaagctggaaagaacccagatgccccgcaacagaggaatgga
tacagaaaatgtagtacatttacacaatggaatactactcagctattaaa
aaaaatgaatttatgaaattcctaggcaaatggatggacctggagggcat
catcctgagtgaggtaacccaatcacaaaggaactcacacaatatgtact
cactgataagtggctattagcccagaaacttaggatacccaagatataag
atacaacttgctaaacgcatgaaattcaagaagaaggaagaccaaagtgt
ggacactctaccccttcctagaaatgggaacaaaacacccatggaaggag
ttacagagacaaaatttggagctgtgacaaaaagatggaccatctagtga
ttgccatatgcagggatccatctcataatcagcttccaaacgctgacacc
attgcacacactagcaaaattttgctgaaaggacccagatatagctctct
cttgtgagactatgccggggcctagcaaatacagaagtggatgatcacag
tcagctattggatgggtcacacggccccaatgcaggagctagagatatta
cccaaggagctaaagggaactgcaaccctatagtggacacatatgactaa
ccagtacctggggagctcttgtctttagctgcatatgtatcaaaagatgg
cctagtcggccatcactgcaagagaggcccattggacttgccactttaga
tgcccagttacagggaacaaagccaggccaaagggagatggttggtgtat
gagatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145606963_145608121
seq2: B6Ng01-070L15.b_44_1201

seq1  GAATTCACTTTTTTTATTTAAAACCTGTACGTATTTACAACTCTAATGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTTTTATTTAAAACCTGTACGTATTTACAACTCTAATGGT  50

seq1  GACCTGTGATTGTGAACTGACAGTACTTGGAAGCATTCTGGTTATCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTGATTGTGAACTGACAGTACTTGGAAGCATTCTGGTTATCACAA  100

seq1  AATTGGTGACAGGCTTTGAGAGTTTGTCACATGGACATGCCAATGTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTGACAGGCTTTGAGAGTTTGTCACATGGACATGCCAATGTTCTA  150

seq1  TGAACCTTTTATAAAGGAATATATTTTTAAAGTAAATATATTGTATTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTTTTATAAAGGAATATATTTTTAAAGTAAATATATTGTATTGTA  200

seq1  CTGTGAACTTGTGGGTGCTTTTCATTAGTATCTGTACAGTGTAAATAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAACTTGTGGGTGCTTTTCATTAGTATCTGTACAGTGTAAATAGAT  250

seq1  GATCATGGAAATAAAATTACTTAATCCAACCTTGTTATTACTGAATGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGGAAATAAAATTACTTAATCCAACCTTGTTATTACTGAATGCCA  300

seq1  CTAACATAAGTATTTGTGACAGGCAGCCTGCTTGCCCTGTGACGTTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATAAGTATTTGTGACAGGCAGCCTGCTTGCCCTGTGACGTTTTGA  350

seq1  TTCACAGTGGGGATTAGCATGTAGGGAGAGCCTCCCATGCTCGGGTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGTGGGGATTAGCATGTAGGGAGAGCCTCCCATGCTCGGGTGCCT  400

seq1  TGTGCATACTTCTCTCCTACAGTCCTGGGAGGAAAGCAGACGTGAGCGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATACTTCTCTCCTACAGTCCTGGGAGGAAAGCAGACGTGAGCGTC  450

seq1  CTCAGGTTTGTGGTGAGAGCTTGAGGAACTGGGCAGAGGGGTACACAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTTTGTGGTGAGAGCTTGAGGAACTGGGCAGAGGGGTACACAGCA  500

seq1  GTGAGTGAAGAGGAGCGGTCACGCAGGACTGACTCCAGTCAGATGAAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGAAGAGGAGCGGTCACGCAGGACTGACTCCAGTCAGATGAAGCC  550

seq1  ACCTGTCACTCGTCAGACTTCAGTCGTTTGCCAAGAACATTATCATCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCACTCGTCAGACTTCAGTCGTTTGCCAAGAACATTATCATCTCT  600

seq1  GCCATGTGCACTTGTATTAGGGAGGTCTCCTACTCTGATTCTGCAGCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTGCACTTGTATTAGGGAGGTCTCCTACTCTGATTCTGCAGCTGC  650

seq1  ACTGATAAATGCCTTATAGTGTGAGTATAAGTATTCATTTCTTCATTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATAAATGCCTTATAGTGTGAGTATAAGTATTCATTTCTTCATTAGG  700

seq1  TAGACTGAAGATGAGGCTCCTCTGTGAAAGATGAGCAAATTCAGAAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGAAGATGAGGCTCCTCTGTGAAAGATGAGCAAATTCAGAAAAGA  750

seq1  ACATAAGGTAACCAGTTAAATTTGAGTCTGTCTGAGTATATGTGATATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGGTAACCAGTTAAATTTGAGTCTGTCTGAGTATATGTGATATAA  800

seq1  GAGACACATTAAAAACCATCTGAAATTCTAATTTAACTTAGCATCTTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACATTAAAAACCATCTGAAATTCTAATTTAACTTAGCATCTTGTT  850

seq1  TATTTGGGGGTCTGGGGTGAAGCCTAAAACCATGTCCATGCTAGGCGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGGGGTCTGGGGTGAAGCCTAAAACCATGTCCATGCTAGGCGAAA  900

seq1  GCCATACTAAACTATACATCTGTCCTCTGGCACCTAGGGCTTTCCTCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATACTAAACTATACATCTGTCCTCTGGCACCTAGGGCTTTCCTCTAT  950

seq1  CCGTCCCTATGTTAATGCTTTGAATATAGCAAGCAAAGCAAAATGAACCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCCCTATGTTAATGCTTTGAATATAGCAAGCAAAGCAAAATGAACCT  1000

seq1  CCTTTTACTCTGGGACCTCTATTC-TTTCTGGTCTCTTCAGCTTTGCTGA  1049
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  CCTTTTACTCTGGGA-CTCTATTCTTTTCTGGTCTCTTCAGCTTTGCTGA  1049

seq1  GGCCGGCACACACTGTCCTCTTACTC-TTCTCACCATGCAGACACGCTGC  1098
      ||| |||||||||||| ||||||||| |||||| |||||||| |||||||
seq2  GGCGGGCACACACTGTTCTCTTACTCTTTCTCA-CATGCAGAAACGCTGC  1098

seq1  TGGTATGGGGGATGCTTTCCAGGTCCCCACACAGTGTGTCAAAGCCACGC  1148
      ||||||||||||||| |||||||| ||||||||| ||||| |||||||||
seq2  TGGTATGGGGGATGC-TTCCAGGTTCCCACACAG-GTGTC-AAGCCACGC  1145

seq1  CATCTC--CCTTC  1159
      ||||||  |||||
seq2  CATCTCTTCCTTC  1158