BAC Information

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BAC

Clone NameB6Ng01-070P23
Chromosome3 (Build37)
Map Location 144,883,257 - 145,007,750
singlet/doubletdoublet
Overlap geneCol24a1
Upstream geneLOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream gene2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070P23.bB6Ng01-070P23.g
ACCDH888822DH888823
length1,2331,120
definitionDH888822|Mus musculus domesticus DNA, BAC clone: B6Ng01-070P23, 5' end.DH888823|Mus musculus domesticus DNA, BAC clone: B6Ng01-070P23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,883,257 - 144,884,492)(145,006,614 - 145,007,750)
sequence
gaattccaaccctctgaaagctttcgaagaaaaaaaccagaatgttactt
gttttcctgttttgtttttccactagaaatcaaaacctcttgatcattgt
tttatatcttctaatactgtctggtggaagagtccactggggaatggatt
tctgtgcaacactgaaatcttgtccttcaaattatgtcatattaagaagc
tgttgtctccagataaatatcaagacaatcagaaaatatcagtgcataga
ttagtaagtcattgctaccattattggaaagtcagataagattacttttg
ttgaataacgtagacacattcccactttacttgtgaaccccagtgctttg
aagataaatgttcccttctgatgagcagatacttctttaaataaataaat
aaataaataaataaataaataaacgctagatgttctgccataatcatgca
tttttcccccagtgagggtttcaggctcctgatttctgttttgaaagttt
ctgtggacatattaagataccttagaaggagatgtctaggacaatatgaa
ctttggatcacccgtgaattcataaaatgagaaagatctcattcatcttt
gaatcccaggtacccggctttgtgctttgcatgagttaagctctcgatgg
ctgttttgtttatgatgaaggctttgctgtctggattccaatggaaggac
atcagagaggcaggaaatgatttatatgttccttgccagaagccaacctt
attgagattcaggcggaatttctatgtctctctttagttcatgatgtata
tcttcttttcaacagtgagttctgatgctgtctttgacaatggccttcca
tgtacattacagaatgtcaaagtctttcattgaagaaaccttcttgagct
ggatcatgaacttccttatgagcaaacccagagacatcttttctcgagac
tgtcttcacccatttgttagccacactctgtgtccaaacccagacaagaa
gcactgaacagaaaatgatttctgataaaatagccacataaagaataaat
atgaagtagattgttgttcatataaagaggctaatcatgatgaatgggtc
ggtgttatgcctcggatgttcctggggtgcctaccaggtccagcccttca
ctgactgaataatggtacatctgcgttgtggacttgaacgtacttcatgt
cgacccctccaatctttttcctggggcatcaga
gaattcttccctgatatatgagtttcccaggagaacgcttcagacgtaat
atttgaaggaaataacctcaccctttctccttcaggtcccagctgtccca
cctctccaggagaaccgatgaaacccttcaagcaagaaaacaatctttat
attgtctcgtttcactgctcactccacaaaattctaagtagaagtgttta
aaagtgtcatttgtcttaatattaaatttaaagatgtaaaattatgaaca
gcttctcctcatgttactgctttctgtcaaagcattacacattgatcttt
tttcactgatacaaaagagtcgagtgcaacccaaggcacggcagcaacag
caaatcaacacagtcaaagcctttctctcgctgatgctctggggcaggaa
aacacatagaccacttatataaaagggtagactgtaagaagcacaggcat
ttcagtgaggggaggggagagatgcacagcacataaatcttagtaattag
aggctgtggatgtacacaccaaacccagcaatgacagctatggggttgta
atttgtagtacactccattttcccttttttgtttactaaggatggctccc
attttcctttaaaggtttagaagcataatgggatggccctgatgtgaagc
tgacgtccttcttctcagatgcgtcctcacccctgacagtgatgatgatt
ctcacatatatcaaatcatctccactttaaactgctgtacatctctgcac
ctcttcactccaatgtgtcttctaaggctttggtgtgctcatatgtaaat
gatgctgtactccgtgagtacagcatatcctagcatcactaacagcaagt
taagaatgggaagtgcataagaatgatgtagacacagccttgatgggacc
catggctcctgtgcaccaagggaaaatggcaaacacattcctttctaact
aaatttgcataaactcagacagccaagaagtgtgggaatggcagtacttt
gtatcatttccttctactttctgcagcatacataataaactgatgaaaaa
cgctacttactcgacaccttggagctggttacctctgtcagctacctaat
gtgaacagagaggttgtcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144883257_144884492
seq2: B6Ng01-070P23.b_44_1276

seq1  GAATTCCAACCCTCTGAAAGCTTTCGAAGAAAAAAACCAGAATGTTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACCCTCTGAAAGCTTTCGAAGAAAAAAACCAGAATGTTACTT  50

seq1  GTTTTCCTGTTTTGTTTTTCCACTAGAAATCAAAACCTCTTGATCATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTGTTTTGTTTTTCCACTAGAAATCAAAACCTCTTGATCATTGT  100

seq1  TTTATATCTTCTAATACTGTCTGGTGGAAGAGTCCACTGGGGAATGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATCTTCTAATACTGTCTGGTGGAAGAGTCCACTGGGGAATGGATT  150

seq1  TCTGTGCAACACTGAAATCTTGTCCTTCAAATTATGTCATATTAAGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCAACACTGAAATCTTGTCCTTCAAATTATGTCATATTAAGAAGC  200

seq1  TGTTGTCTCCAGATAAATATCAAGACAATCAGAAAATATCAGTGCATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTCCAGATAAATATCAAGACAATCAGAAAATATCAGTGCATAGA  250

seq1  TTAGTAAGTCATTGCTACCATTATTGGAAAGTCAGATAAGATTACTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAGTCATTGCTACCATTATTGGAAAGTCAGATAAGATTACTTTTG  300

seq1  TTGAATAACGTAGACACATTCCCACTTTACTTGTGAACCCCAGTGCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAACGTAGACACATTCCCACTTTACTTGTGAACCCCAGTGCTTTG  350

seq1  AAGATAAATGTTCCCTTCTGATGAGCAGATACTTCTTTAAATAAATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAATGTTCCCTTCTGATGAGCAGATACTTCTTTAAATAAATAAAT  400

seq1  AAATAAATAAATAAATAAATAAACGCTAGATGTTCTGCCATAATCATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATAAATAAATAAACGCTAGATGTTCTGCCATAATCATGCA  450

seq1  TTTTTCCCCCAGTGAGGGTTTCAGGCTCCTGATTTCTGTTTTGAAAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCCCAGTGAGGGTTTCAGGCTCCTGATTTCTGTTTTGAAAGTTT  500

seq1  CTGTGGACATATTAAGATACCTTAGAAGGAGATGTCTAGGACAATATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGACATATTAAGATACCTTAGAAGGAGATGTCTAGGACAATATGAA  550

seq1  CTTTGGATCACCCGTGAATTCATAAAATGAGAAAGATCTCATTCATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGATCACCCGTGAATTCATAAAATGAGAAAGATCTCATTCATCTTT  600

seq1  GAATCCCAGGTACCCGGCTTTGTGCTTTGCATGAGTTAAGCTCTCGATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCAGGTACCCGGCTTTGTGCTTTGCATGAGTTAAGCTCTCGATGG  650

seq1  CTGTTTTGTTTATGATGAAGGCTTTGCTGTCTGGATTCCAATGGAAGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGTTTATGATGAAGGCTTTGCTGTCTGGATTCCAATGGAAGGAC  700

seq1  ATCAGAGAGGCAGGAAATGATTTATATGTTCCTTGCCAGAAGCCAACCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGAGGCAGGAAATGATTTATATGTTCCTTGCCAGAAGCCAACCTT  750

seq1  ATTGAGATTCAGGCGGAATTTCTATGTCTCTCTTTAGTTCATGATGTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGATTCAGGCGGAATTTCTATGTCTCTCTTTAGTTCATGATGTATA  800

seq1  TCTTCTTTTCAACAGTGAGTTCTGATGCTGTCTTTGACAATGGCCTTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTTCAACAGTGAGTTCTGATGCTGTCTTTGACAATGGCCTTCCA  850

seq1  TGTACATTACAGAATGTCAAAGTCTTTCATTGAAGAAACCTTCTTGAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATTACAGAATGTCAAAGTCTTTCATTGAAGAAACCTTCTTGAGCT  900

seq1  GGATCATGAACTTCCTTATGAGCAAAACCCAGAGACATCTTTTCTCGAGA  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGATCATGAACTTCCTTATGAGC-AAACCCAGAGACATCTTTTCTCGAGA  949

seq1  CTGTCTTCACCCATTTGTTAGCCACACTCTGTTGTCCAAACCCAGACAAG  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGTCTTCACCCATTTGTTAGCCACACTCTG-TGTCCAAACCCAGACAAG  998

seq1  AAGCACTGAACAGAAAATGATTTCTGATAAAATAGCCACATAAAGAATAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTGAACAGAAAATGATTTCTGATAAAATAGCCACATAAAGAATAA  1048

seq1  ATATGAAGTAGATTGT--GTCATATAAAGAGGCTAATCATGATGAAT-GG  1097
      ||||||||||||||||   |||||||||||||||||||||||||||| ||
seq2  ATATGAAGTAGATTGTTGTTCATATAAAGAGGCTAATCATGATGAATGGG  1098

seq1  TCCGTG-TATG-CTCGGATGTGCCT-GGGTGCCTACCAGTGTCCAG-CCT  1143
      || ||| |||| ||||||||| ||| ||||||||||||| |||||| |||
seq2  TCGGTGTTATGCCTCGGATGTTCCTGGGGTGCCTACCAG-GTCCAGCCCT  1147

seq1  TCACCTGGACTGAATAATGTCACATCTGC-TTGT-GACTCTGAACAGTTA  1191
      ||||   ||||||||||||  |||||||| |||| |||| |||||   ||
seq2  TCAC--TGACTGAATAATGGTACATCTGCGTTGTGGACT-TGAAC--GTA  1192

seq1  CTTTCAATTCTCCAACCCCTCACAATCTTCTTTTCT--GGCATCAGA  1236
      | ||||  |   | ||||||| ||||||| ||| ||  |||||||||
seq2  C-TTCATGT---CGACCCCTC-CAATCTT-TTTCCTGGGGCATCAGA  1233

seq1: chr3_145006614_145007750
seq2: B6Ng01-070P23.g_68_1187 (reverse)

seq1  CTGACAACATCTCTTGTTCACACTAGGGTTTAGCTGGACCAGAGGGTAAC  50
      |||||||| |||| |||||||| ||||   ||||||   |||| ||||||
seq2  CTGACAACCTCTC-TGTTCACATTAGG---TAGCTG--ACAGA-GGTAAC  43

seq1  CCAGGCTCCAAAGGTGTCCGAGTAAGTAGCCGTTTTTCATCAGTTTATTA  100
      |   ||||| ||||||| ||||||||||| ||||||||||||||||||||
seq2  C--AGCTCC-AAGGTGT-CGAGTAAGTAG-CGTTTTTCATCAGTTTATTA  88

seq1  TGTATGCCTGCAAGAAAGTAGAAGGAAATGATACAAAGTACTTGCCATTC  150
      |||||| |||| ||||||||||||||||||||||||||||| ||||||||
seq2  TGTATG-CTGC-AGAAAGTAGAAGGAAATGATACAAAGTAC-TGCCATTC  135

seq1  CCACACTTCTTGGCTGTCTTGAGTTTTATGCAAATTTAGTTAGAAAGGAA  200
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  CCACACTTCTTGGCTGTC-TGAG-TTTATGCAAATTTAGTTAGAAAGGAA  183

seq1  TGTGTTTGCCATTTTCCCTTGGTGCACAGGAGCCATGGGTCCCATCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGCCATTTTCCCTTGGTGCACAGGAGCCATGGGTCCCATCAAGG  233

seq1  CTGTGTCTACATCATTCTTATGCACTTCCCATTCTTAACTTGCTGTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTACATCATTCTTATGCACTTCCCATTCTTAACTTGCTGTTAGT  283

seq1  GATGCTAGGATATGCTGTACTCACGGAGTACAGCATCATTTACATATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAGGATATGCTGTACTCACGGAGTACAGCATCATTTACATATGAG  333

seq1  CACACCAAAGCCTTAGAAGACACATTGGAGTGAAGAGGTGCAGAGATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAAAGCCTTAGAAGACACATTGGAGTGAAGAGGTGCAGAGATGTA  383

seq1  CAGCAGTTTAAAGTGGAGATGATTTGATATATGTGAGAATCATCATCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTTAAAGTGGAGATGATTTGATATATGTGAGAATCATCATCACT  433

seq1  GTCAGGGGTGAGGACGCATCTGAGAAGAAGGACGTCAGCTTCACATCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGGTGAGGACGCATCTGAGAAGAAGGACGTCAGCTTCACATCAGG  483

seq1  GCCATCCCATTATGCTTCTAAACCTTTAAAGGAAAATGGGAGCCATCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCCATTATGCTTCTAAACCTTTAAAGGAAAATGGGAGCCATCCTT  533

seq1  AGTAAACAAAAAAGGGAAAATGGAGTGTACTACAAATTACAACCCCATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACAAAAAAGGGAAAATGGAGTGTACTACAAATTACAACCCCATAG  583

seq1  CTGTCATTGCTGGGTTTGGTGTGTACATCCACAGCCTCTAATTACTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATTGCTGGGTTTGGTGTGTACATCCACAGCCTCTAATTACTAAGA  633

seq1  TTTATGTGCTGTGCATCTCTCCCCTCCCCTCACTGAAATGCCTGTGCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGCTGTGCATCTCTCCCCTCCCCTCACTGAAATGCCTGTGCTTC  683

seq1  TTACAGTCTACCCTTTTATATAAGTGGTCTATGTGTTTTCCTGCCCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTCTACCCTTTTATATAAGTGGTCTATGTGTTTTCCTGCCCCAGA  733

seq1  GCATCAGCGAGAGAAAGGCTTTGACTGTGTTGATTTGCTGTTGCTGCCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGCGAGAGAAAGGCTTTGACTGTGTTGATTTGCTGTTGCTGCCGT  783

seq1  GCCTTGGGTTGCACTCGACTCTTTTGTATCAGTGAAAAAAGATCAATGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGGTTGCACTCGACTCTTTTGTATCAGTGAAAAAAGATCAATGTG  833

seq1  TAATGCTTTGACAGAAAGCAGTAACATGAGGAGAAGCTGTTCATAATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTTTGACAGAAAGCAGTAACATGAGGAGAAGCTGTTCATAATTTT  883

seq1  ACATCTTTAAATTTAATATTAAGACAAATGACACTTTTAAACACTTCTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTAAATTTAATATTAAGACAAATGACACTTTTAAACACTTCTAC  933

seq1  TTAGAATTTTGTGGAGTGAGCAGTGAAACGAGACAATATAAAGATTGTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTTTGTGGAGTGAGCAGTGAAACGAGACAATATAAAGATTGTTT  983

seq1  TCTTGCTTGAAGGGTTTCATCGGTTCTCCTGGAGAGGTGGGACAGCTGGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTGAAGGGTTTCATCGGTTCTCCTGGAGAGGTGGGACAGCTGGG  1033

seq1  ACCTGAAGGAGAAAGGGTGAGGTTATTTCCTTCAAATATTACGTCTGAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAGGAGAAAGGGTGAGGTTATTTCCTTCAAATATTACGTCTGAAG  1083

seq1  CGTTCTCCTGGGAAACTCATATATCAGGGAAGAATTC  1137
      |||||||||||||||||||||||||||||||||||||
seq2  CGTTCTCCTGGGAAACTCATATATCAGGGAAGAATTC  1120