BAC Information

Click to search

BAC

Clone NameB6Ng01-071A19
Chromosome3 (Build37)
Map Location 21,026,204 - 21,027,361
singlet/doubletsinglet
Overlap genenone
Upstream geneGyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b, EG665094
Downstream geneLOC100040325, 7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071A19.bB6Ng01-071A19.g
ACCDH888862DH888863
length1,2721,131
definitionDH888862|Mus musculus domesticus DNA, BAC clone: B6Ng01-071A19, 5' end.DH888863|Mus musculus domesticus DNA, BAC clone: B6Ng01-071A19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttctaagacttttatcatgaatgggtgttggattttg
tcgaatgctttctcagcatctaacaagatgatcatgtggtttttgtcttt
gagtttgtttatatactggattacgtcgatggatttccatatattggacc
atccctgcatccctaggatgaaacctacttggttaggatggatgattgtt
ttgatgtgttcttggattcggttagcaagaactttattgaggatttttgc
atcgatattcataagggaaattggtctgaagttctctatctttgttgggt
ctttttgtggtttaggtatcacagtaattgtggcttcatagattgagttt
ggtagagtaccttctgcttctattttgtggaatagtttgtgaagaactgg
gattagacctttgaaggtctgatagaactctgcactaaacccatctggtc
ctgggctttttttttggttgggagactattaatgactgcttctatttctt
taggggatataggactgtttagatcattaacctgatcttgatttaacttt
ggtacctggtatctgtctagaaacttgtctatttgatccaggttctccat
tttgttgagtatagccttttatagaaggatctgatggtgttttggatttc
ttcaggatctgttgttatgtctcccctttgatttctgattttgttaatta
ggatgctgtccctgtgccctctagtgagtctggctcagggtttatctatc
ttgttgattttctcaaagagccagctcctcgattggttgattctttgaat
agttctttttgtttccacttggttgatttcacccctgagtttgattattt
cctgccctctactcctcttgggtgaatttgcttctagagcttttagatgt
gttgtcaagccgctaatgtgtgtgttctctctagtttctttttggaggca
ctcagagctatttgttttcctcttagaaatgctttcattgtgttccatag
tttgggtatgttgtggcttcattttcataaactccacaaagtcctaattt
cttaattatttcttccttgacaagttattggagagaagttgttgttcagt
ttccacgttgaatgttggcttctctattattatttggatatggagatacg
ccttagtctgggtgaatgggatagatgcatgggccatttccaatttgtat
ctgttgacctgtttgtccatattgcaattgcaagtttacatggagggtcc
tagaagaaggatatccctcttg
gaattcactaacaattttctagatggtgagacatacttacttggggataa
acccaaaatagagtatggaaattcatgaaaggaaagcagtataactaaaa
agagatgtgtgcaaatctacaattatagcttagtgacttcatttttttct
cagaaaccagagattggtagaagatatgtggggttactataggcctgaac
agcatacttaattctcctactatcaaggatagctttgtgccaacagaatc
tagccttccaaagtgtatgataacattaggaaggacaggccacgttctgc
cttataaaattattctgagtttaaacaaactgaaaacacacatagtaaat
aagctgaccacaacacgtccaacctgttagtcatagcaagatatttagaa
aagtctcagatatttgaaaatggaaacaatacctagtacatcagaaagga
agcctcaaggaaaattagaaaatgtacttaattaagtaaaaagtaaaaac
tacatttacaaaatgttttagatatacatttaacattgcatatagctaac
agcataacataagcaagcattttagtttattttaatctttttcgatttta
gttattttgtgtggggataacagggtatatccatgccataccatgtatgt
gtaagtcagaggataacatgaaagagtcaattctctctttctactatctg
agttcaatgagattgtttcaggaaagtctagatattttacataaatctcc
agaatgaaaaggagaggcatacattaaataccgtagggaccaaaggaggg
acaataaagacaagacgagaagtaaatgaacctcagaatacaaaggtaac
atgaagaatacaacctataacagctactgaaaggtaaattaaactccaaa
atattttatattcatccaaaactatcagcagagggaaagaaaggaaataa
gaaaaaaaaaaactccatgtcataaaggaagaatagcaataacattctca
aacaaatgcaaaacatagaagagatattataatactctttggcagcaaat
ctgaaaatgagctaagttactgaacaattatagcagtatagtctatatta
tgaagaaactaattagagttcagctatgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_21026204_21027361
seq2: B6Ng01-071A19.g_64_1194

seq1  GAATTCACTAACAATTTTCTAGATGGTGAGACATACTTACTTGGGGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAACAATTTTCTAGATGGTGAGACATACTTACTTGGGGATAA  50

seq1  ACCCAAAATAGAGTATGGAAATTCATGAAAGGAAAGCAGTATAACTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAATAGAGTATGGAAATTCATGAAAGGAAAGCAGTATAACTAAAA  100

seq1  AGAGATGTGTGCAAATCTACAATTATAGCTTAGTGACTTCATTTTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTGTGCAAATCTACAATTATAGCTTAGTGACTTCATTTTTTTCT  150

seq1  CAGAAACCAGAGATTGGTAGAAGATATGTGGGGTTACTATAGGCCTGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCAGAGATTGGTAGAAGATATGTGGGGTTACTATAGGCCTGAAC  200

seq1  AGCATACTTAATTCTCCTACTATCAAGGATAGCTTTGTGCCAACAGAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACTTAATTCTCCTACTATCAAGGATAGCTTTGTGCCAACAGAATC  250

seq1  TAGCCTTCCAAAGTGTATGATAACATTAGGAAGGACAGGCCACGTTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTCCAAAGTGTATGATAACATTAGGAAGGACAGGCCACGTTCTGC  300

seq1  CTTATAAAATTATTCTGAGTTTAAACAAACTGAAAACACACATAGTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAAATTATTCTGAGTTTAAACAAACTGAAAACACACATAGTAAAT  350

seq1  AAGCTGACCACAACACGTCCAACCTGTTAGTCATAGCAAGATATTTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGACCACAACACGTCCAACCTGTTAGTCATAGCAAGATATTTAGAA  400

seq1  AAGTCTCAGATATTTGAAAATGGAAACAATACCTAGTACATCAGAAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCAGATATTTGAAAATGGAAACAATACCTAGTACATCAGAAAGGA  450

seq1  AGCCTCAAGGAAAATTAGAAAATGTACTTAATTAAGTAAAAAGTAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAAGGAAAATTAGAAAATGTACTTAATTAAGTAAAAAGTAAAAAC  500

seq1  TACATTTACAAAATGTTTTAGATATACATTTAACATTGCATATAGCTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTACAAAATGTTTTAGATATACATTTAACATTGCATATAGCTAAC  550

seq1  AGCATAACATAAGCAAGCATTTTAGTTTATTTTAATCTTTTTCGATTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAACATAAGCAAGCATTTTAGTTTATTTTAATCTTTTTCGATTTTA  600

seq1  GTTATTTTGTGTGGGGATAACAGGGTATATCCATGCCATACCATGTATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTGTGTGGGGATAACAGGGTATATCCATGCCATACCATGTATGT  650

seq1  GTAAGTCAGAGGATAACATGAAAGAGTCAATTCTCTCTTTCTACTATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCAGAGGATAACATGAAAGAGTCAATTCTCTCTTTCTACTATCTG  700

seq1  AGTTCAATGAGATTGTTTCAGGAAAGTCTAGATATTTTACATAAATCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAATGAGATTGTTTCAGGAAAGTCTAGATATTTTACATAAATCTCC  750

seq1  AGAATGAAAAGGAGAGGCATACATTAAATACCGTAGGGACCAAAGGAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAAAAGGAGAGGCATACATTAAATACCGTAGGGACCAAAGGAGGG  800

seq1  ACAATAAAGACAAGACGAGAAGTAAATGAACCTCAGAATACAAAGGTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAAGACAAGACGAGAAGTAAATGAACCTCAGAATACAAAGGTAAC  850

seq1  ATGAAGAATACAACCTATAACAGCTACTGAAAGGTAAATTAAACTCCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAATACAACCTATAACAGCTACTGAAAGGTAAATTAAACTCCAAA  900

seq1  ATATTTTATATTCATCCAAAACTATCAGCAGAGGGGAAAGAAAGGAAATA  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATATTTTATATTCATCCAAAACTATCAGCAGA-GGGAAAGAAAGGAAATA  949

seq1  AGGAAAAAAAAAAAACTCCATGTCATAAAAGGAAAGAATAGCAATACACA  1000
      ||  |||||||||||||||||||||||||  | ||||||||||||| |||
seq2  AG--AAAAAAAAAAACTCCATGTCATAAA--GGAAGAATAGCAATA-ACA  994

seq1  TTCCTCAAACAAAATGCAAAACATAGAAAGAGGATATTATAAATAACTCT  1050
      || ||||||| ||||||||||||||| |||| ||||||||||   |||||
seq2  TT-CTCAAAC-AAATGCAAAACATAG-AAGA-GATATTATAA--TACTCT  1038

seq1  TTGGGCAGCAAATCTGAAAAAATTGAGCTAAAAGTTACTGAAACAAATTT  1100
      || |||||||||||||||||   ||||||  ||||||||| |||||  ||
seq2  TT-GGCAGCAAATCTGAAAA---TGAGCT--AAGTTACTG-AACAA--TT  1079

seq1  ATAAGCAGTATAGTCTATATTTATGAAAGAAACTAAATTAAGAGTTCAGC  1150
      || |||||||||||||||| ||||| ||||||||||  | ||||||||||
seq2  AT-AGCAGTATAGTCTATA-TTATG-AAGAAACTAA--TTAGAGTTCAGC  1124

seq1  TTATGCAA  1158
       |||||||
seq2  -TATGCAA  1131