BAC Information

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BAC

Clone NameB6Ng01-071G06
Chromosome3 (Build37)1 (Build37)
Map Location 32,853,227 - 32,854,406150,897,385 - 150,897,854
singlet/doubletsingletsinglet
Overlap genePex2
Upstream geneKcnmb2, LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13
Downstream geneEG545512, LOC100041058, Ttc14, Ccdc39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071G06.bB6Ng01-071G06.g
ACCDH889105DH889106
length1,159658
definitionDH889105|Mus musculus domesticus DNA, BAC clone: B6Ng01-071G06, 5' end.DH889106|Mus musculus domesticus DNA, BAC clone: B6Ng01-071G06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,853,227 - 32,854,406)(150,897,385 - 150,897,854)
sequence
gaattccacatcgtgaggacaacctgtcaactggggatttagacatccgc
cgtgtgaggcctggagagcctttcttgttcttcacaaggtacttgtactt
tgggttttgcttaatccagttcttcagtgcctcacaagcatcctgctggt
ggctggtgttggtgtaacttacagccaaggccatcagagccttcaagttg
ttgggctgcaactccaggcacctcgagagaaggcaaaacaccaatggtta
cagagaggtactttatacatcctcgaaacctttattaattaaaatttgca
gaagttaagtttatttatgtcaagtcacttgaaagtgctttatttcttca
aatgaaaacccagaccaaagagtgtttttaaaagaggttaaaacatcctc
atgacagcaggatttgtaactttaggtttttaaaaatacttattgcattt
tatgtgtattctgtggttctgtgtaccatgtttgagcctggtgcccatgg
aatgcagaagagggcactggattcctggaaatggagttattgatggttgt
gaactaccatgcgagaactgggaactgatcctgaatcctctgcagcagca
gccagtgcgattaaacaccaagtccacttttccagctctagctgtgttaa
tgagcttttctaaagctgcaagaagtgtggttgctgtatccatattatct
taactcccataattggacttgaacaaaattttgatgcatagagatggaag
gctagacagcattttgcagaggagagggtgatatctttgtttctagacta
atgcacgtgtatagatatcccaggttattgttgtcccctgaatccatttc
tactggcctctaacaggacttttcaaacttagaagtgcaaaatagagact
atgcctattccaacactgggggctgcagtggatctcatgtgggaagtctg
acagcccaagatgatggagtgctgggagatgcacgtgcccaaactctgag
cgagcatcagatccactgagattttgtgctatgatcaggtttcacactag
cagtcaatcgttatggtctaagacatctacaaaggatccatgtgcttgca
tgcagtttagaaatgatcagtcaaggctgcagctcaaggttactagaatg
catctctgg
gaattccatagaaatttattaattttactaagtaagtaaaaagtacatgg
attaagtcttgttagagccacaaatccctcaggatatagtttactctggt
aaccatactcattgaggaaacatgtatagatttgctaaggtagtctcagg
tgaaaactaaacatatagagactttcaaatcctgatattggagtctaagc
agcttacataaagtggataagattcaaggacttggagaattggaccctat
ggctgaacggcagaaacaaagaaataatgatagtgtgtgtatgtatgtat
atatatatatatatatatatatatatatatacacacacacacacacacac
acactctctctctctctgtgtgtgagtgtgtgtgtgtgagtgtgtgtgtc
tctctctctgtgtgtgtgtgagagactgagagagggagggaggtgtgtgt
atgtgtgtatgtgtctctctatatatatatagagagaatatatatgtgtg
tgtgtatattgagtgtgtgagagagagagagagagagagagagagagaga
gcgctcgagagagagagagcgcgcgcttgtcttactgactgagatagata
tatatatatatatatatatgtatatatatatatatagatacacatatata
tatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_32853227_32854406
seq2: B6Ng01-071G06.b_45_1203

seq1  GAATTCCACATCGTGAGGACAACCTGTCAACTGGGGATTTAGACATCCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATCGTGAGGACAACCTGTCAACTGGGGATTTAGACATCCGC  50

seq1  CGTGTGAGGCCTGGAGAGCCTTTCTTGTTCTTCACAAGGTACTTGTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGAGGCCTGGAGAGCCTTTCTTGTTCTTCACAAGGTACTTGTACTT  100

seq1  TGGGTTTTGCTTAATCCAGTTCTTCAGTGCCTCACAAGCATCCTGCTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTGCTTAATCCAGTTCTTCAGTGCCTCACAAGCATCCTGCTGGT  150

seq1  GGCTGGTGTTGGTGTAACTTACAGCCAAGGCCATCAGAGCCTTCAAGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTGTTGGTGTAACTTACAGCCAAGGCCATCAGAGCCTTCAAGTTG  200

seq1  TTGGGCTGCAACTCCAGGCACCTCGAGAGAAGGCAAAACACCAATGGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTGCAACTCCAGGCACCTCGAGAGAAGGCAAAACACCAATGGTTA  250

seq1  CAGAGAGGTACTTTATACATCCTCGAAACCTTTATTAATTAAAATTTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGTACTTTATACATCCTCGAAACCTTTATTAATTAAAATTTGCA  300

seq1  GAAGTTAAGTTTATTTATGTCAAGTCACTTGAAAGTGCTTTATTTCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAAGTTTATTTATGTCAAGTCACTTGAAAGTGCTTTATTTCTTCA  350

seq1  AATGAAAACCCAGACCAAAGAGTGTTTTTAAAAGAGGTTAAAACATCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAACCCAGACCAAAGAGTGTTTTTAAAAGAGGTTAAAACATCCTC  400

seq1  ATGACAGCAGGATTTGTAACTTTAGGTTTTTAAAAATACTTATTGCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGCAGGATTTGTAACTTTAGGTTTTTAAAAATACTTATTGCATTT  450

seq1  TATGTGTATTCTGTGGTTCTGTGTACCATGTTTGAGCCTGGTGCCCATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTATTCTGTGGTTCTGTGTACCATGTTTGAGCCTGGTGCCCATGG  500

seq1  AATGCAGAAGAGGGCACTGGATTCCTGGAAATGGAGTTATTGATGGTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGAAGAGGGCACTGGATTCCTGGAAATGGAGTTATTGATGGTTGT  550

seq1  GAACTACCATGCGAGAACTGGGAACTGATCCTGAATCCTCTGCAGCAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACCATGCGAGAACTGGGAACTGATCCTGAATCCTCTGCAGCAGCA  600

seq1  GCCAGTGCGATTAAACACCAAGTCCACTTTTCCAGCTCTAGCTGTGTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGCGATTAAACACCAAGTCCACTTTTCCAGCTCTAGCTGTGTTAA  650

seq1  TGAGCTTTTCTAAAGCTGCAAGAAGTGTGGTTGCTGTATCCATATTATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTTTCTAAAGCTGCAAGAAGTGTGGTTGCTGTATCCATATTATCT  700

seq1  TAACTCCCATAATTGGACTTGAACAAAATTTTGATGCATAGAGATGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCCATAATTGGACTTGAACAAAATTTTGATGCATAGAGATGGAAG  750

seq1  GCTAGACAGCATTTTGCAGAGGAGAGGGTGATATCTTTGTTTCTAGACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACAGCATTTTGCAGAGGAGAGGGTGATATCTTTGTTTCTAGACTA  800

seq1  ATGCAGGTGTATAGATATCCCAGGTTATTGTTGTCCCCTGAATCCATTTC  850
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACGTGTATAGATATCCCAGGTTATTGTTGTCCCCTGAATCCATTTC  850

seq1  TACTGGCCTCTAACAGGACTTTTCAAACTTAGAAGTGCAAAATAGAGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCCTCTAACAGGACTTTTCAAACTTAGAAGTGCAAAATAGAGACT  900

seq1  ATGCCTATTCCAACACTGGGGGCTGCAGTGGATCTCAGGTGGGAAGGTCT  950
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  ATGCCTATTCCAACACTGGGGGCTGCAGTGGATCTCATGTGGGAA-GTCT  949

seq1  GACAAGCCCAAGATGATGGAGGTGCTGGGAGATGCACGTGCCCAAACTCT  1000
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAC-AGCCCAAGATGATGGA-GTGCTGGGAGATGCACGTGCCCAAACTCT  997

seq1  GAGCGAGCATCAGGATCCACTTGGAGATTTTTGTGCTAATGATCAGGGTT  1050
      |||||||||||| ||||||||  |||| ||||||||| ||||||| ||||
seq2  GAGCGAGCATCA-GATCCACT--GAGA-TTTTGTGCT-ATGATCA-GGTT  1041

seq1  TCAACACTAAGCAAGTCAATCGTTAT-GTCTAAGACATCTTACAAAAGAA  1099
      || ||||| ||| ||||||||||||| |||||||||||| ||| |||| |
seq2  TC-ACACT-AGC-AGTCAATCGTTATGGTCTAAGACATC-TAC-AAAGGA  1086

seq1  TCCCATTGTGCTTTGCATGCAGGTTTAGAAATGATCAGTCCAGAGGCTGC  1149
      |||   ||||| ||||||||| ||||||||||||||||||   |||||||
seq2  TCC--ATGTGC-TTGCATGCA-GTTTAGAAATGATCAGTC--AAGGCTGC  1130

seq1  AGCTCAAAGTGATCTAGAATTTGCATC-CTGG  1180
      ||||||| || | ||||||  |||||| ||||
seq2  AGCTCAAGGTTA-CTAGAA--TGCATCTCTGG  1159

seq1: chr1_150897385_150897854
seq2: B6Ng01-071G06.g_353_725 (reverse)

seq1  TATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAAA  50
      ||||||||||||||||||| | | | | | | | | |   | | |||| |
seq2  TATATATATATATATGTGTATCTATATATATATATATACATATATATATA  50

seq1  CATATCAACATATACAAATACACATACATATACACATACTCAC-ATATAT  99
       ||||    |||||   || | ||  ||   | |||  | | |  | | |
seq2  TATAT----ATATATCTAT-CTCAGTCAGTAAGACAAGCGCGCGCTCTCT  95

seq1  ATATATTCA----------TATATATACATGTATACATATATAT-ACAGA  138
       | | |  |          | | | |   | | |   | | | | ||| |
seq2  CTCTCTCGAGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACA  145

seq1  TGTAAATATACACACACATATATATGTAC---ATACACACACATACACGT  185
        | |||||||||||||| |||||| | |    || | | | ||| |   
seq2  -CTCAATATACACACACACATATATATTCTCTCTATATATATATAGAGAG  194

seq1  ACACGTACACGTACACATACACATATACATAAGAGGATATCAGTTTGAAG  235
      |||| |||||  ||| | |||||  | | |       | ||||| |    
seq2  ACACATACAC--ACATACACACACCTCCCT--CCCTCTCTCAGTCT----  236

seq1  TTTAGGTCATGGACAAACCTGGAGAGAAAAAAAGGTAAGCAAAGGAGAAA  285
            |||   ||| ||   ||||||                 || | |
seq2  -----CTCACACACACACAGAGAGAGA-----------------GACACA  264

seq1  TATAATTACTTTATAATTATAACTGTAAAAAATTAAAAATAAATAAACAC  335
       | | | ||                                 | | ||||
seq2  CACACTCAC---------------------------------ACACACAC  281

seq1  AATTTATAAATGGCATAAGTGTTCAAAGGTACTAAAATAGCTAAGTGTGT  385
      | |          || |      || ||        | ||   || | | 
seq2  ACT----------CACA------CACAG--------AGAG---AGAGAGA  304

seq1  CTGTGTGTGTGTATATATATATATATGTGTGTGTGTGTATATATATATAT  435
       ||||||||||              |||||||||||||||||||||||||
seq2  GTGTGTGTGTG--------------TGTGTGTGTGTGTATATATATATAT  340

seq1  ATATATATATATATATATATATATATATATACACA  470
      ||||||||||||||||||||| ||| ||| |||  
seq2  ATATATATATATATATATATACATACATACACA--  373