BAC Information

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BAC

Clone NameB6Ng01-071I22
Chromosome3 (Build37)
Map Location 16,723,980 - 16,817,004
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100038947, LOC622425, LOC664795, LOC381484, Ythdf3, LOC100040034
Downstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071I22.bB6Ng01-071I22.g
ACCDH889223DH889224
length9361,096
definitionDH889223|Mus musculus domesticus DNA, BAC clone: B6Ng01-071I22, 5' end.DH889224|Mus musculus domesticus DNA, BAC clone: B6Ng01-071I22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,723,980 - 16,724,914)(16,815,903 - 16,817,004)
sequence
gaattctgtgacttttcagtcatagcgctgtgtgagttatgagaatggag
gcttacctgacctcagtcttggctgcatcaagatggatctggaggagtaa
gaaaggttaaaagcgtttacaggccaaaccatgatggacacagatatagt
gctgcatttcacactgaagacacaatcacaccctcatttccaaaatattt
ttcttgcatttttcatgctcaagctctccctctgcgtatgctactcctgg
atttagttcctgtcttttaaatagagtatcactcctatttcttatttttt
tttcttttctctctctctctctctctctctctctctctctctctctctct
ttttaaagacagggtttccctgtgtagtcctggctgtcctggaattcatt
ctgtagacaaagatggcctcaaactcagaaatctgcctgcctctgcatcc
caagtgctgggattaaaggcatgtgccacctctgcctggctctatttctc
atttctaggttcctacttccctctgcttgcctcacttcctgatatcctgg
agggtattattctattaactttactgtcaggtaaacataagccttccagc
attagcattctttgtctttgaaaagacaaagactgaagtcattgtcaccc
tttcaccatttagggagaaaagagagatcattttacccagaaagcatctc
tgtgtttaaaacaattctcagggatagggaatatgtaaatccctgaaaaa
taaatttcaaggttctgcaaagctattagaggaagctgtaagtgttatac
aacgggaatatcatctggcttaatttaatggggctaattttggagaaaat
ctgggaaaccctggacttataacagttatccaaagatgttaatgaaaccc
accaacatatccatttccctccttgatattttccaa
gaattctttgagacaaaatgctgtatgggttatattaggtgcaaaagtac
ataatagattgccagaacttcgatgttcaagagaacacttacttaaagaa
aatagtggccctcatgttcctattcttgcgtgtataaaccagtaaaaaat
taaaatttagaaagtattaaacaaaaacatttttatcctgtatatctcca
ggaatttaattaaagtaatatattaagagaccaattttggtctgtggtag
aattttaatgtgagaaggtaagaacaaaggcattccaagagttgttctgt
gagatatgttagtgtccagatactgaagcctctgactatatttggagagc
ttctcccttctaaaacagcatttttgctcatagataccagttctagcatt
ttcatcttcaaatagggagtgttagatacctgtggctatgattcctgaca
tagtttggcattccaagcaacacattggatctcagtgcccagttctactg
atgtctctatcagtatccaacttttgaaatattattatgggctcccttat
gagtataaaacttgaagctgatctatggtcctagaagagattctgtgagt
aactcaatatctttttttaatatggttcactgtcttgccatatatcaggc
acagtgaactttttcagctaagattgctgactgatccagtagccaaattg
gatctctttgagttagacagtctcatatatcttgaaaagtacaaattgaa
cagcaataatctgagcagctttccgtggactctgaccagtgtgtaggtcg
aaattgcattaatctctaagtgtcagcctttggaaaagatatccttaagt
tagaacttgatcccaatggagcaaagctcaaataatgatgctggaaattc
tatcagataaggtagaaattggggctatttctgcagatagatgcctctag
gattgatgatcacagtggaaattcatgttcttatgcctctgtaaatttag
catgcttatttctagagtcattaattaacctggggattacaacatgaatg
cgatgtaagatagtagtgcaattttgctttgcagacttatctacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_16723980_16724914
seq2: B6Ng01-071I22.b_42_977

seq1  GAATTCTGTGACTTTTCAGTCATAGCGCTGTGTGAGTTATGAGAATGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGACTTTTCAGTCATAGCGCTGTGTGAGTTATGAGAATGGAG  50

seq1  GCTTACCTGACCTCAGTCTTGGCTGCATCAAGATGGATCTGGAGGAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACCTGACCTCAGTCTTGGCTGCATCAAGATGGATCTGGAGGAGTAA  100

seq1  GAAAGGTTAAAAGCGTTTACAGGCCAAACCATGATGGACACAGATATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTTAAAAGCGTTTACAGGCCAAACCATGATGGACACAGATATAGT  150

seq1  GCTGCATTTCACACTGAAGACACAATCACACCCTCATTTCCAAAATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATTTCACACTGAAGACACAATCACACCCTCATTTCCAAAATATTT  200

seq1  TTCTTGCATTTTTCATGCTCAAGCTCTCCCTCTGCGTATGCTACTCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCATTTTTCATGCTCAAGCTCTCCCTCTGCGTATGCTACTCCTGG  250

seq1  ATTTAGTTCCTGTCTTTTAAATAGAGTATCACTCCTATTTCTTATTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTCCTGTCTTTTAAATAGAGTATCACTCCTATTTCTTATTTTTT  300

seq1  TTTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  350

seq1  TTTTAAAGACAGGGTTTCCCTGTGTAGTCCTGGCTGTCCTGGAATTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGACAGGGTTTCCCTGTGTAGTCCTGGCTGTCCTGGAATTCATT  400

seq1  CTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCATCC  450
      |||||||| | | |||||||||||||||||||||||||||||||||||||
seq2  CTGTAGACAAAGATGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCATCC  450

seq1  CAAGTGCTGGGATTAAAGGCATGTGCCACCTCTGCCTGGCTCTATTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCTGGGATTAAAGGCATGTGCCACCTCTGCCTGGCTCTATTTCTC  500

seq1  ATTTCTAGGTTCCTACTTCCCTCTGCTTGCCTCACTTCCTGATATCCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAGGTTCCTACTTCCCTCTGCTTGCCTCACTTCCTGATATCCTGG  550

seq1  AGGGTATTATTCTATTTACTTTTCTGTCAGGTAAACATAAGCCTTCCAGC  600
      |||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  AGGGTATTATTCTATTAACTTTACTGTCAGGTAAACATAAGCCTTCCAGC  600

seq1  ATTAGCATTCTTTGTCTTTGAAAAGACAAAGACTGAAGTCATTGTCACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATTCTTTGTCTTTGAAAAGACAAAGACTGAAGTCATTGTCACCC  650

seq1  TTTCACCATTTAGGGAG-AAAGAGAGATCATTTTACCCACAAAGCATCTC  699
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  TTTCACCATTTAGGGAGAAAAGAGAGATCATTTTACCCAGAAAGCATCTC  700

seq1  TGTGTATAAAACAATTCTCAGGGATAGGGAATATGTATAT-CCTG-AAAA  747
      ||||| ||||||||||||||||||||||||||||||| || |||| ||||
seq2  TGTGTTTAAAACAATTCTCAGGGATAGGGAATATGTAAATCCCTGAAAAA  750

seq1  TTAATTTCAAGTTTCTGCAAAGCTATT-GAGGAAGCTGTAAAGTTTATAC  796
      | ||||||||| ||||||||||||||| |||||||||||||   ||||||
seq2  TAAATTTCAAGGTTCTGCAAAGCTATTAGAGGAAGCTGTAAGTGTTATAC  800

seq1  AA-TGGAATA-CAACTGGCTTAATTCAAT-GGGCTAATTTTGGAGAAAAA  843
      ||  |||||| || ||||||||||| ||| ||||||||||||||| ||||
seq2  AACGGGAATATCATCTGGCTTAATTTAATGGGGCTAATTTTGGAG-AAAA  849

seq1  TCTGGGAACACATGAACATAATAACAGTTATTCAAAAGATGTTAAATGAA  893
      ||||||||  | || || | |||||||||| || ||||||||| ||||||
seq2  TCTGGGAAACCCTGGAC-TTATAACAGTTA-TCCAAAGATGTT-AATGAA  896

seq1  AGCCACCAACATATCCCATTTTCCTCCATGATAGTTTTCCAA  935
      | |||||||||||| |||||| ||||| ||||| ||||||||
seq2  ACCCACCAACATAT-CCATTTCCCTCCTTGATA-TTTTCCAA  936

seq1: chr3_16815903_16817004
seq2: B6Ng01-071I22.g_64_1159 (reverse)

seq1  TTGTAGATTAGGTCTTGCAAAGCAAACATTGCACTACTATCCTACATCGC  50
      ||||||| || ||| ||||||||||| |||||||||||||| ||||||||
seq2  TTGTAGA-TAAGTC-TGCAAAGCAAA-ATTGCACTACTATCTTACATCGC  47

seq1  ATTCCATGTTGTAATCCCCAAGGTTAATTAATGACTCTAGAAAATAAGCA  100
      ||| ||||||||||||||| |||||||||||||||||||| |||||||||
seq2  ATT-CATGTTGTAATCCCC-AGGTTAATTAATGACTCTAG-AAATAAGCA  94

seq1  TGCTAAATTTACAGAGGCATAAGAACATGAATTTCCACTGTGATCATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAATTTACAGAGGCATAAGAACATGAATTTCCACTGTGATCATCAA  144

seq1  TCCTAGAGGCATCTATCTGCAGAAATAGCCCCAATTTCTACCTTATCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAGGCATCTATCTGCAGAAATAGCCCCAATTTCTACCTTATCTGA  194

seq1  TAGAATTTCCAGCATCATTATTTGAGCTTTGCTCCATTGGGATCAAGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTCCAGCATCATTATTTGAGCTTTGCTCCATTGGGATCAAGTTC  244

seq1  TAACTTAAGGATATCTTTTCCAAAGGCTGACACTTAGAGATTAATGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAAGGATATCTTTTCCAAAGGCTGACACTTAGAGATTAATGCAAT  294

seq1  TTCGACCTACACACTGGTCAGAGTCCACGGAAAGCTGCTCAGATTATTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGACCTACACACTGGTCAGAGTCCACGGAAAGCTGCTCAGATTATTGC  344

seq1  TGTTCAATTTGTACTTTTCAAGATATATGAGACTGTCTAACTCAAAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAATTTGTACTTTTCAAGATATATGAGACTGTCTAACTCAAAGAGA  394

seq1  TCCAATTTGGCTACTGGATCAGTCAGCAATCTTAGCTGAAAAAGTTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTTGGCTACTGGATCAGTCAGCAATCTTAGCTGAAAAAGTTCACT  444

seq1  GTGCCTGATATATGGCAAGACAGTGAACCATATTAAAAAAAGATATTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGATATATGGCAAGACAGTGAACCATATTAAAAAAAGATATTGAG  494

seq1  TTACTCACAGAATCTCTTCTAGGACCATAGATCAGCTTCAAGTTTTATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCACAGAATCTCTTCTAGGACCATAGATCAGCTTCAAGTTTTATAC  544

seq1  TCATAAGGGAGCCCATAATAATATTTCAAAAGTTGGATACTGATAGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGGGAGCCCATAATAATATTTCAAAAGTTGGATACTGATAGAGAC  594

seq1  ATCAGTAGAACTGGGCACTGAGATCCAATGTGTTGCTTGGAATGCCAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTAGAACTGGGCACTGAGATCCAATGTGTTGCTTGGAATGCCAAAC  644

seq1  TATGTCAGGAATCATAGCCACAGGTATCTAACACTCCCTATTTGAAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAGGAATCATAGCCACAGGTATCTAACACTCCCTATTTGAAGATG  694

seq1  AAAATGCTAGAACTGGTATCTATGAGCAAAAATGCTGTTTTAGAAGGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTAGAACTGGTATCTATGAGCAAAAATGCTGTTTTAGAAGGGAG  744

seq1  AAGCTCTCCAAATATAGTCAGAGGCTTCAGTATCTGGACACTAACATATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTCCAAATATAGTCAGAGGCTTCAGTATCTGGACACTAACATATC  794

seq1  TCACAGAACAACTCTTGGAATGCCTTTGTTCTTACCTTCTCACATTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAACAACTCTTGGAATGCCTTTGTTCTTACCTTCTCACATTAAAA  844

seq1  TTCTACCACAGACCAAAATTGGTCTCTTAATATATTACTTTAATTAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCACAGACCAAAATTGGTCTCTTAATATATTACTTTAATTAAATT  894

seq1  CCTGGAGATATACAGGATAAAAATGTTTTTGTTTAATACTTTCTAAATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGATATACAGGATAAAAATGTTTTTGTTTAATACTTTCTAAATTT  944

seq1  TAATTTTTTACTGGTTTATACACGCAAGAATAGGAACATGAGGGCCACTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTACTGGTTTATACACGCAAGAATAGGAACATGAGGGCCACTA  994

seq1  TTTTCTTTAAGTAAGTGTTCTCTTGAACATCGAAGTTCTGGCAATCTATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTAAGTAAGTGTTCTCTTGAACATCGAAGTTCTGGCAATCTATT  1044

seq1  ATGTACTTTTGCACCTAATATAACCCATACAGCATTTTGTCTCAAAGAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTTTGCACCTAATATAACCCATACAGCATTTTGTCTCAAAGAAT  1094

seq1  TC  1102
      ||
seq2  TC  1096