BAC Information

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BAC

Clone NameB6Ng01-071M05
Chromosome3 (Build37)
Map Location 122,259,356 - 122,357,729
singlet/doubletdoublet
Overlap geneFnbp1l, Ppia-ps3_2252.1
Upstream geneA730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3
Downstream genePde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071M05.bB6Ng01-071M05.g
ACCDH889368DH889369
length1,118967
definitionDH889368|Mus musculus domesticus DNA, BAC clone: B6Ng01-071M05, 5' end.DH889369|Mus musculus domesticus DNA, BAC clone: B6Ng01-071M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,259,356 - 122,260,503)(122,357,041 - 122,357,729)
sequence
gaattctgggcttccctgtttttatttcattcatacaataatgcacgggc
tcaatggagagtgtgagaaactgggacccattaggagtactggatgtgaa
taaactagtaggggttaagggtggggactgtggctaatatggaaataaag
aaaggaatcaataagccaaatgtgcatagtttgttgtcctaaatgaaaat
tctatttctggcaacatattttcacaaaatacactttaaagttttctatg
aaaatagagaataaacaaagttttgctaaagctattatcttttaaaagcc
aattacttttaaacaataccatttcacttttttttttttacaaactgata
gattaaaataaagagtatacaaattatattagaacaatataacctagact
aaaataattttttctggatttcagcatgttagcatcataatggattctat
ataggttatatttaacttgtacttgtcaagagataaaggcatcaactata
gttaaagttatcacacaaaatacttctaaaactgtatctgattactataa
ataggcaaatcttcccaccatccctagctttcctctcaggtcatttcctc
ttaaataagcaccggtattctcatctttgtaagctctggctcctctgctg
tgaccaagagaggtctcaccactcaacctcttcactggacagtattatta
aaagcataagtaaagcccgagttaccaataaatgtgttttttaaagacag
tagcagttagagaatttgagttaaatgttatatactttcatatgccaaga
tctaagtactaaattaaattaattaagcacactttaaaaattacagtgta
tcagacagaaggaatacatctctccttactggtccaacacaacgactaaa
tcgacaagaaagacaaagtgctggtttatcctatttgctcttgtgttgag
ctatgtttgcttagcttccaaaattacagacatcagatctgaggcttgac
aagagagcagatctctagtaactagagttctaaagctgaagtaaatcaaa
cctagccttctcattaagtgcaatggatataaagttagtagtatgagcta
gcagttattgacgctgat
gaattcatgcagttgaatccttctcaacagtctgttttacgggaacactt
cattaccgtgacccgcagttctggttccggaatgagggatcttccttgca
ccggtgatggtaaccgtcccgggttttctcatcccaggatttctcgtccc
gggtttcagcaccaactcttcccgagtttcggcaccaactcttacacgcg
ttctcacgaccggccaggaagaacgcaacaaaccggaatcttctgcggca
aaactttattgcttacatcttcaggagcaagagtgcaagagccagagcaa
gagcgcaagagcgcaagagctttattgcttacatctttaggagccagggc
cagagcaagagcaagagaatggcgaaaccccgtccctttttaaggagaat
tattctccgcctaggacgtattactccctgattggctgcagcccatcggc
caagttgtcgtcacggggaaggcagagcacatgtagtggaaaactaccct
tggcacatgcgcagattatttgtttaccacttagaacacaggatgtcagc
gccatcttgcaacagcgaatgtgagggcggctccccacaaattgagttac
tagctagtcggggaacaagtccaagcttatggtttaggcttttattcata
aataatacgtgtcagagctgttgttttgggaactagggtaccagtggaaa
agcccacaattagagtagactgtcccttaactcaattaattgttccattt
gccatatagaagatttttaaatgtaagcaatcccatttgttagttcttgg
ttcttagttcttcagttcccagaaaatccttactcacagttatattttaa
ggtgctctatgttctcagatgacaaagttatttcctgttcttgtctattt
gttataaatgctccctttagctggataggtacttctttcattagattttg
gagatttttccactgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_122259356_122260503
seq2: B6Ng01-071M05.b_45_1162

seq1  GAATTCTGGGCTTCCCTGTTTTTATTTCATTCATACAATAATGCACGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGCTTCCCTGTTTTTATTTCATTCATACAATAATGCACGGGC  50

seq1  TCAATGGAGAGTGTGAGAAACTGGGACCCATTAGGAGTACTGGATGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGAGAGTGTGAGAAACTGGGACCCATTAGGAGTACTGGATGTGAA  100

seq1  TAAACTAGTAGGGGTTAAGGGTGGGGACTGTGGCTAATATGGAAATAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAGTAGGGGTTAAGGGTGGGGACTGTGGCTAATATGGAAATAAAG  150

seq1  AAAGGAATCAATAAGCCAAATGTGCATAGTTTGTTGTCCTAAATGAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATCAATAAGCCAAATGTGCATAGTTTGTTGTCCTAAATGAAAAT  200

seq1  TCTATTTCTGGCAACATATTTTCACAAAATACACTTTAAAGTTTTCTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTCTGGCAACATATTTTCACAAAATACACTTTAAAGTTTTCTATG  250

seq1  AAAATAGAGAATAAACAAAGTTTTGCTAAAGCTATTATCTTTTAAAAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAGAATAAACAAAGTTTTGCTAAAGCTATTATCTTTTAAAAGCC  300

seq1  AATTACTTTTAAACAATACCATTTCACTTTTTTTTTTTTACAAACTGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTTTAAACAATACCATTTCACTTTTTTTTTTTTACAAACTGATA  350

seq1  GATTAAAATAAAGAGTATACAAATTATATTAGAACAATATAACCTAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAATAAAGAGTATACAAATTATATTAGAACAATATAACCTAGACT  400

seq1  AAAATAATTTTTTCTGGATTTCAGCATGTTAGCATCATAATGGATTCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTTTTTCTGGATTTCAGCATGTTAGCATCATAATGGATTCTAT  450

seq1  ATAGGTTATATTTAACTTGTACTTGTCAAGAGATAAAGGCATCAACTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTATATTTAACTTGTACTTGTCAAGAGATAAAGGCATCAACTATA  500

seq1  GTTAAAGTTATCACACAAAATACTTCTAAAACTGTATCTGATTACTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGTTATCACACAAAATACTTCTAAAACTGTATCTGATTACTATAA  550

seq1  ATAGGCAAATCTTCCCACCATCCCTAGCTTTCCTCTCAGGTCATTTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCAAATCTTCCCACCATCCCTAGCTTTCCTCTCAGGTCATTTCCTC  600

seq1  TTAAATAAGCACCGGTATTCTCATCTTTGTAAGCTCTGGCTCCTCTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAGCACCGGTATTCTCATCTTTGTAAGCTCTGGCTCCTCTGCTG  650

seq1  TGACCAAGAGAGGTCTCACCACTCAACCTCTTCACTGGACAGTATTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAGAGAGGTCTCACCACTCAACCTCTTCACTGGACAGTATTATTA  700

seq1  AAAGCATAAGTAAAGCCCGAGTTACCAATAAATGTGTTTTTTAAAGACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATAAGTAAAGCCCGAGTTACCAATAAATGTGTTTTTTAAAGACAG  750

seq1  TAGCAGTTAGAGAATTTGAGTTAAATGTTATATACTTTCATATGCCAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTTAGAGAATTTGAGTTAAATGTTATATACTTTCATATGCCAAGA  800

seq1  TCTAAGTACTAAATTAAATTAATTAAGCACACTTTAAAAATTACAGTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTACTAAATTAAATTAATTAAGCACACTTTAAAAATTACAGTGTA  850

seq1  TCAGACAGAAGGAATACATCTCTCCTTACTGGTCCAACACAACGACTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGAAGGAATACATCTCTCCTTACTGGTCCAACACAACGACTAAA  900

seq1  TCGACAAGAAAGACAAAGTGCTGGTTTATCCTATTTGCTCTTGTGTTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACAAGAAAGACAAAGTGCTGGTTTATCCTATTTGCTCTTGTGTTGAG  950

seq1  CTATGTTTGCTTAGCTTCCAAAAATTAACAGGACATCAAGATCTGAGGCT  1000
      |||||||||||||||||||||||  | ||| |||||| ||||||||||||
seq2  CTATGTTTGCTTAGCTTCCAAAA--TTACA-GACATC-AGATCTGAGGCT  996

seq1  TGACAAGAAGAGCAAGATTCTCTTAGTAAACTAGAGGTTCCTAAAAGCTG  1050
      ||||||| ||||| ||| |||| |||| ||||||| ||||   |||||||
seq2  TGACAAG-AGAGC-AGA-TCTC-TAGT-AACTAGA-GTTC--TAAAGCTG  1038

seq1  AAGTTAAATCAAAAACACTAAGCCCTTCTCATTAAAGTTGCATATGGATA  1100
      ||| |||||||||    |||   ||||||||||||   |||| |||||| 
seq2  AAG-TAAATCAAA---CCTA--GCCTTCTCATTAA--GTGCA-ATGGAT-  1078

seq1  ATAAAAGGTTATAGTAGTATGAGCTATAGCAGGTAATTTGACGCTGAT  1148
      |||||  ||  |||||||||||||  |||||| ||  |||||||||||
seq2  ATAAA--GT--TAGTAGTATGAGC--TAGCAGTTA--TTGACGCTGAT  1118

seq1: chr3_122357041_122357729
seq2: B6Ng01-071M05.g_67_755 (reverse)

seq1  ACCCTAGTTCCCAAAACAACAGCTCTGACACGTATTATTTATGAATAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGTTCCCAAAACAACAGCTCTGACACGTATTATTTATGAATAAAA  50

seq1  GCCTAAACCATAAGCTTGGACTTGTTCCCCGACTAGCTAGTAACTCAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAACCATAAGCTTGGACTTGTTCCCCGACTAGCTAGTAACTCAATT  100

seq1  TGTGGGGAGCCGCCCTCACATTCGCTGTTGCAAGATGGCGCTGACATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGAGCCGCCCTCACATTCGCTGTTGCAAGATGGCGCTGACATCCT  150

seq1  GTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTAGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTAGTTTT  200

seq1  CCACTACATGTGCTCTGCCTTCCCCGTGACGACAACTTGGCCGATGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTACATGTGCTCTGCCTTCCCCGTGACGACAACTTGGCCGATGGGCT  250

seq1  GCAGCCAATCAGGGAGTAATACGTCCTAGGCGGAGAATAATTCTCCTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAATCAGGGAGTAATACGTCCTAGGCGGAGAATAATTCTCCTTAA  300

seq1  AAAGGGACGGGGTTTCGCCATTCTCTTGCTCTTGCTCTGGCCCTGGCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGACGGGGTTTCGCCATTCTCTTGCTCTTGCTCTGGCCCTGGCTCC  350

seq1  TAAAGATGTAAGCAATAAAGCTCTTGCGCTCTTGCGCTCTTGCTCTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGTAAGCAATAAAGCTCTTGCGCTCTTGCGCTCTTGCTCTGGCT  400

seq1  CTTGCACTCTTGCTCCTGAAGATGTAAGCAATAAAGTTTTGCCGCAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACTCTTGCTCCTGAAGATGTAAGCAATAAAGTTTTGCCGCAGAAG  450

seq1  ATTCCGGTTTGTTGCGTTCTTCCTGGCCGGTCGTGAGAACGCGTGTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCGGTTTGTTGCGTTCTTCCTGGCCGGTCGTGAGAACGCGTGTAAGA  500

seq1  GTTGGTGCCGAAACTCGGGAAGAGTTGGTGCTGAAACCCGGGACGAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGCCGAAACTCGGGAAGAGTTGGTGCTGAAACCCGGGACGAGAAA  550

seq1  TCCTGGGATGAGAAAACCCGGGACGGTTACCATCACCGGTGCAAGGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGATGAGAAAACCCGGGACGGTTACCATCACCGGTGCAAGGAAGA  600

seq1  TCCCTCATTCCGGAACCAGAACTGCGGGTCACGGTAATGAAGTGTTCCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCATTCCGGAACCAGAACTGCGGGTCACGGTAATGAAGTGTTCCCG  650

seq1  TAAAACAGACTGTTGAGAAGGATTCAACTGCATGAATTC  689
      |||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGACTGTTGAGAAGGATTCAACTGCATGAATTC  689