BAC Information

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BAC

Clone NameB6Ng01-071O13
Chromosome3 (Build37)
Map Location 24,652,418 - 24,653,561
singlet/doubletsinglet
Overlap geneEG635702
Upstream geneEG665189
Downstream geneLOC100039592, Nlgn1, LOC621017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071O13.bB6Ng01-071O13.g
ACCDH889473DH889474
length1,2341,138
definitionDH889473|Mus musculus domesticus DNA, BAC clone: B6Ng01-071O13, 5' end.DH889474|Mus musculus domesticus DNA, BAC clone: B6Ng01-071O13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcaattctgagccccatttttaatggggttatttgattt
tctggagtccaccattttcagttctttatatatattggatattagtcccc
tatctgatttaggataggtaaagatactttcccaatctgttgctggcctt
tttgtcttattgacagtatcttttgtcttgcagaagctttgcagttccat
gaggtcccatttgtcgattctcgatcttacagcacaagcagttgctgttc
tattcaggaatttttcccctatgcccatatcttcgaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttgat
ccacttagatttgaccttagtacaaggagataggaatggatcgattcaca
ttcttctacatgataacaaccagttgtgccagcaccatttgttgaaaatg
ctctttcttccactggatggttttagctcccttgtcgaagatcaagtggc
cataggtgtgtgggttcatttctgggtcttcaattttattccattggtct
acttgtctgtcactataccagtaccatgcagtttttatcacaattgctct
gtagtaaagctttaggtcagggatggtgattccaccagaggttcttttat
ccttgagaagattttttgctatcctaggttttttcttattccagatgaat
ttgcagattgctctttctaattcgctgaagaattgagttggaattttgat
ggggattgcattgaatctgtagattacttttggcaagatagccattttta
caatgttgatgctgccaatccatgatcatgggagatctttccatcttctg
agatcttcattaatttctttcttcagagactggaagctcttatcatacag
atctttcacttccttagttagagtcatgccaagatattttatattatttg
tgactattgagaaggtgttgttccctaatttctttctcagcctgtttatt
ctttgtgtagaagaaaggccattgacttgttgagttaattttatatcctg
ctgctcacaagaagctgtttatcaagttaggagtctctgtggattttagg
tcactgaatataacatacatatccactgcaaggaattttgactcctttca
ttgaatccctgattcctttgtgtgcatgtctgcgactcgaacacgtgtat
gatgaaaagttaccctgtactagctcgatttaag
gaattcaggcaaaatgtcatcagaatctagatattaattaaagaccagtg
gtggaataagcatgaaggaatgactcaaagacctctgtgttggtccattg
tttacatagatgttggtttatttctttgaatatatgagacagaatgagag
caggccaatggtccacagcaatgcaatgacaatatataatgtggacattt
atcagggtcagctgaagagcaagtgaggctcctatttggaataacagagt
aattttccaccacttattttggctgtcatcaacagcatttagaaacattt
gcctaaacagtccctccaatacatatttaagaaacaaattcagctttcaa
atcaaagtcgggaggggcaaagagtgttgctatttcaccagataatagtt
ataaagtaataatccttaatgtccttcccttcttcaacattaaatacctt
tgacacattaaaaacattaaagtaagccatcattttctttttaatacttc
ttcaaggatagagtgttagaaaaataattgtgtcagtcccatgacagtca
tgatacctcttttataaatttctattttcaagattttgtttttattaagg
accctctccccatatggaagtagtggaaatctgtttacattagaagagta
agggttagagtaggatatttgaaatatcaagcattttatttgaatgcagg
tagaaagatatggtttctatatggactgtcctatgatgcatatcacctta
aatacaggacaaaaacatttcccttaagacatatacaaatccttatataa
tccagttatttgctttcccaaacctcattagacaaatatcttgtcctaaa
tccagggatttgaagtgaagtgagatataagagaaattctgaaagatatg
agatattttctttataattttcatgtgttattggataatcttcttgtatt
tgaattctgaagaacattcacttagctagaagaattttgtaaagtaaagt
gattctctaacttgtataccagctagtaaaaataaagactctaccctcac
agggacaagctaactgctgtctgtttatggaacagtatgtccacaagtta
aaacaatagtaaatgatcaatttagaaacaggtgttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_24652418_24653561
seq2: B6Ng01-071O13.g_68_1205

seq1  GAATTCAGGCAAAATGTCATCAGAATCTAGATATTAATTAAAGACCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCAAAATGTCATCAGAATCTAGATATTAATTAAAGACCAGTG  50

seq1  GTGGAATAAGCATGAAGGAATGACTCAAAGACCTCTGTGTTGGTCCATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATAAGCATGAAGGAATGACTCAAAGACCTCTGTGTTGGTCCATTG  100

seq1  TTTACATAGATGTTGGTTTATTTCTTTGAATATATGAGACAGAATGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATAGATGTTGGTTTATTTCTTTGAATATATGAGACAGAATGAGAG  150

seq1  CAGGCCAATGGTCCACAGCAATGCAATGACAATATATAATGTGGACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAATGGTCCACAGCAATGCAATGACAATATATAATGTGGACATTT  200

seq1  ATCAGGGTCAGCTGAAGAGCAAGTGAGGCTCCTATTTGGAATAACAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGTCAGCTGAAGAGCAAGTGAGGCTCCTATTTGGAATAACAGAGT  250

seq1  AATTTTCCACCACTTATTTTGGCTGTCATCAACAGCATTTAGAAACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCACCACTTATTTTGGCTGTCATCAACAGCATTTAGAAACATTT  300

seq1  GCCTAAACAGTCCCTCCAATACATATTTAAGAAACAAATTCAGCTTTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAACAGTCCCTCCAATACATATTTAAGAAACAAATTCAGCTTTCAA  350

seq1  ATCAAAGTCGGGAGGGGCAAAGAGTGTTGCTATTTCACCAGATAATAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGTCGGGAGGGGCAAAGAGTGTTGCTATTTCACCAGATAATAGTT  400

seq1  ATAAAGTAATAATCCTTAATGTCCTTCCCTTCTTCAACATTAAATACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTAATAATCCTTAATGTCCTTCCCTTCTTCAACATTAAATACCTT  450

seq1  TGACACATTAAAAACATTAAAGTAAGCCATCATTTTCTTTTTAATACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACATTAAAAACATTAAAGTAAGCCATCATTTTCTTTTTAATACTTC  500

seq1  TTCAAGGATAGAGTGTTAGAAAAATAATTGTGTCAGTCCCATGACAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGATAGAGTGTTAGAAAAATAATTGTGTCAGTCCCATGACAGTCA  550

seq1  TGATACCTCTTTTATAAATTTCTATTTTCAAGATTTTGTTTTTATTAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCTCTTTTATAAATTTCTATTTTCAAGATTTTGTTTTTATTAAGG  600

seq1  ACCCTCTCCCCATATGGAAGTAGTGGAAATCTGTTTACATTAGAAGAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTCCCCATATGGAAGTAGTGGAAATCTGTTTACATTAGAAGAGTA  650

seq1  AGGGTTAGAGTAGGATATTTGAAATATCAAGCATTTTATTTGAATGCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTAGAGTAGGATATTTGAAATATCAAGCATTTTATTTGAATGCAGG  700

seq1  TAGAAAGATATGGTTTCTATATGGACTGTCCTATGATGCATATCACCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGATATGGTTTCTATATGGACTGTCCTATGATGCATATCACCTTA  750

seq1  AATACAGGACAAAAACATTTCCCTTAAGACATATACAAATCCTTATATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGGACAAAAACATTTCCCTTAAGACATATACAAATCCTTATATAA  800

seq1  TCCAGTTATTTGCTTTCCCAAACCTCATTAGACAAATATCTTGTCCTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTATTTGCTTTCCCAAACCTCATTAGACAAATATCTTGTCCTAAA  850

seq1  TCCAGGGATTTGAAGTGAAGTGAGATATAAGAGAAATTCTGAAAGATATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGATTTGAAGTGAAGTGAGATATAAGAGAAATTCTGAAAGATATG  900

seq1  AGATATTTTCTTTATAATTTTCATGTGTTTATTGGATAATCTTCTTTGTA  950
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  AGATATTTTCTTTATAATTTTCATGTG-TTATTGGATAATCTTC-TTGTA  948

seq1  TTTGAATTCTGAAGAACATTCACTTAGCTAGAAGAATTTTGTAAAGTAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTGAATTCTGAAGAACATTCACTTAGCTAGAAGAATTTTGTAAAGT-AA  997

seq1  AGTGATTCTCTTAACTTGTATACCAGCTAGT-AAAATAAAGACTCTACCC  1049
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  AGTGATTCTC-TAACTTGTATACCAGCTAGTAAAAATAAAGACTCTACCC  1046

seq1  TCACAGGGACAAAGCTAAACTGCTGTCTGTCTATTGGAACAGTATGT-CA  1098
      |||||||||| ||||| ||||||||||||| || ||||||||||||| ||
seq2  TCACAGGGAC-AAGCT-AACTGCTGTCTGTTTA-TGGAACAGTATGTCCA  1093

seq1  CAGGTAAAACAAATAGTAAATGATCAAATTAGAAAACAGGTGTTGT  1144
      || || |||  |||||||||||||||| |||| |||||||||||||
seq2  CAAGTTAAAACAATAGTAAATGATCAATTTAG-AAACAGGTGTTGT  1138