BAC Information

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BAC

Clone NameB6Ng01-071P03
Chromosome3 (Build37)13 (Build37)
Map Location 41,059,202 - 41,059,73727,100,345 - 27,101,426
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071P03.bB6Ng01-071P03.g
ACCDH889501DH889502
length1,0271,076
definitionDH889501|Mus musculus domesticus DNA, BAC clone: B6Ng01-071P03, 5' end.DH889502|Mus musculus domesticus DNA, BAC clone: B6Ng01-071P03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,202 - 41,059,737)(27,100,345 - 27,101,426)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatctttgagggttttccctac
tttctcctgtataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggaaatagaaatggatcaattcgc
attcttctacatgataacagccagttgtgccagcaccatttgttgaaaat
gttgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatctctgggtcttcaattctgttccattgg
tctacttgtctgtcactataccagtaccatgcagttttgatcacaattgc
tctgtagtacagttttagatctggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatctgccgattgccctttctaattcgttgaagaacttagttggaatttt
gatgggggttgcattgaatctgtagattgcttttggcaagatggccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgaggtcttctttaatttctttctttagagacttgaagttcttatcata
cagatctttcacttccttagttagagtcacaccaaggtattttatattat
ttgtgactattgagaaggtgttgtttccctactttctttctcagcctgtt
tatcctttgtatacagaaaggccattg
gaattcattatattgatctgatagcattacaatttacaagtagaatgagc
attacttgagagagaaagtgaaggctagatctacttaattactgggttag
aaaaagagcaatgttaatatttgcaaatagattagatgtgactctggtgc
acctgctggtgtgcttgcaaagggaacaaaaacagttggtagatgtgctg
ctccctaggatgagacacagaaaaattcagaccactctgttgttgttgtt
gttgttgttaatttgtttgattaattaaaaaacacactaaagtgcattgg
aattgctggtaggttttggtgagaaattatctgagatttcaatttttaag
aagctcgttgaatctattgattacactaatgcttgtgatgtcctgaacaa
tttgtaatttgtcatttccctctcttgaccattatatgctttattcagtc
agagttctgtatttaaaagtacacacagagtttcaccatttcattattca
tattaaagctgctggtcaattcgggaaaaaaaaaaagaagcttgtggaac
ctattgctcctgctgaccaaagagtgagcctcacagatatgtattcgtcc
agcttctgttgtacaaggagggaggaagatgatgcttgagaaaacaaaat
ggtagcatatttcaaattgctatgttaggtcattttccatttctcaaaag
gtggacaacagcacaagttaagtgcccccagccctcactctaagctctca
gtttcctctcatgttgtctgcaaggtgctttctcctatgacccctacagc
atcttctgccattcacagggggctcttcaaacctccactaactcacgtgt
aaagtctctgacatagactctccatgtgcaaaccaggactttatcgtagt
aaacttagactgtgatatgattttaaaatatgaaatgaccagtactccag
actatcttattggtataatccaattctactgtgtaagatccaaatgtttc
tgtttgttttgtttgttttaagtaaacattttgtccatgcatgtgatgat
gagaaactggcaaaaaaattaatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059202_41059737
seq2: B6Ng01-071P03.b_45_581 (reverse)

seq1  AATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGATCTTCG  50
      |||||||||| |||| | ||| |||||||||||||||||||||||||| |
seq2  AATTGAAGACCCAGAGATGAACCCACACACCTATGGTCACTTGATCTTTG  50

seq1  ACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAA  100
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAACATTTTCAACAAA  100

seq1  TGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCC  150
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGGTGCTGGCACAACTGGCTGTTATCATGTAGAAGAATGCGAATTGATCC  150

seq1  ACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCC  200
      | | |||| |||||||||||||||||||||||||||||| ||||||| ||
seq2  ATTTCTATTTCCTTGTACTAAGGTCAAATCTAAGTGGATTAAGGAACTCC  200

seq1  ACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGC  250
      ||||||||||||||||||||||||||||| |||||||||| ||||||| |
seq2  ACATAAAACCAGAGACACTGAAACTTATACAGGAGAAAGTAGGGAAAACC  250

seq1  CTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGC  300
      ||  |||||||||  |||||||||||||||||| ||||||||||||||||
seq2  CTCAAAGATATGGGTACAGGGGAAAAATTCCTGAATAGAACAGCAATGGC  300

seq1  TTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAA  350
      |||||||||||||| |||||| || |||||||||||||| ||| ||||||
seq2  TTGTGCTGTAAGATCGAGAATCGATAAATGGGACCTCATAAAATTGCAAA  350

seq1  GCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CACCAACA  399
      |||||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  GCTTCTGCAAAGCAAAAGACACCGTCAATAAGACAAAAAGGCCACCAACA  400

seq1  GATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATC  449
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GATTGGGAAAGGATCTTTACCTATCCCAAATCAGATAGGGGACTAATATC  450

seq1  CAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACC  499
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  CAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATAACC  500

seq1  CCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  536
      ||||||||||||||||||||||||| |||||||||||
seq2  CCATTAAAAAATGGGGCTCAGAGCTGAACAAAGAATT  537

seq1: chr13_27100345_27101426
seq2: B6Ng01-071P03.g_68_1143 (reverse)

seq1  TATAT---TTTTTTTGCCAGTATCTCATCCATCACCATGGCATGGAACAA  47
      |||||   ||||||||||||| |||||| ||||| ||| |||||| ||||
seq2  TATATTAATTTTTTTGCCAGTTTCTCAT-CATCA-CAT-GCATGG-ACAA  46

seq1  AATGTTTACTTTAAAAACAAAACAAAACAAAACAGAAACATTTGGATCTT  97
      |||||||||||  ||||| ||||||||| |||||||||||||||||||||
seq2  AATGTTTACTT--AAAAC-AAACAAAAC-AAACAGAAACATTTGGATCTT  92

seq1  ACACAGTAGAATTGGATTATACCAATAAGATAGTCTGGAGTACTGGTCAT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTAGAATTGGATTATACCAATAAGATAGTCTGGAGTACTGGTCAT  142

seq1  TTCATATTTTAAAAATCATATCACAGTCTAAGTTTACTACGATAAAGTCC  197
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTTT-AAAATCATATCACAGTCTAAGTTTACTACGATAAAGTCC  191

seq1  TGGTTTGCACATGGAGAGTCTATGTCAGAGACTTTACACCTGAGTTAGTG  247
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGGTTTGCACATGGAGAGTCTATGTCAGAGACTTTACACGTGAGTTAGTG  241

seq1  GAGGTTTGAAGAGCCCCCTGTGAATGGCAGAAGATGCTGTAGGGGTCATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTGAAGAGCCCCCTGTGAATGGCAGAAGATGCTGTAGGGGTCATA  291

seq1  GGAGAAAGCACCTTGCAGACAACATGAGAGGAAACTGAGAGCTTAGAGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGCACCTTGCAGACAACATGAGAGGAAACTGAGAGCTTAGAGTG  341

seq1  AGGGCTGGGGGCACTTAACTTGTGCTGTTGTCCACCTTTTGAGAAATGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGGGGGCACTTAACTTGTGCTGTTGTCCACCTTTTGAGAAATGGA  391

seq1  AAATGACCTAACATAGCAATTTGAAATATGCTACCATTTTGTTTTCTCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACCTAACATAGCAATTTGAAATATGCTACCATTTTGTTTTCTCAA  441

seq1  GCATCATCTTCCTCCCTCCTTGTACAACAGAAGCTGGACGAATACATATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATCTTCCTCCCTCCTTGTACAACAGAAGCTGGACGAATACATATC  491

seq1  TGTGAGGCTCACTCTTTGGTCAGCAGGAGCAATAGGTTCCACAAGCTTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGCTCACTCTTTGGTCAGCAGGAGCAATAGGTTCCACAAGCTTCT  541

seq1  TTTTTTTTTTCCCGAATTGACCAGCAGCTTTAATATGAATAATGAAATGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCCCGAATTGACCAGCAGCTTTAATATGAATAATGAAATGG  591

seq1  TGAAACTCTGTGTGTACTTTTAAATACAGAACTCTGACTGAATAAAGCAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTCTGTGTGTACTTTTAAATACAGAACTCTGACTGAATAAAGCAT  641

seq1  ATAATGGTCAAGAGAGGGAAATGACAAATTACAAATTGTTCAGGACATCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGTCAAGAGAGGGAAATGACAAATTACAAATTGTTCAGGACATCA  691

seq1  CAAGCATTAGTGTAATCAATAGATTCAACGAGCTTCTTAAAAATTGAAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATTAGTGTAATCAATAGATTCAACGAGCTTCTTAAAAATTGAAAT  741

seq1  CTCAGATAATTTCTCACCAAAACCTACCAGCAATTCCAATGCACTTTAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATAATTTCTCACCAAAACCTACCAGCAATTCCAATGCACTTTAGT  791

seq1  GTGTTTTTTAATTAATCAAACAAATTAACAACAACAACAACAACAACAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTTAATTAATCAAACAAATTAACAACAACAACAACAACAACAGA  841

seq1  GTGGTCTGAATTTTTCTGTGTCTCATCCTAGGGAGCAGCACATCTACCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTGAATTTTTCTGTGTCTCATCCTAGGGAGCAGCACATCTACCAA  891

seq1  CTGTTTTTGTTCCCTTTGCAAGCACACCAGCAGGTGCACCAGAGTCACAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTGTTCCCTTTGCAAGCACACCAGCAGGTGCACCAGAGTCACAT  941

seq1  CTAATCTATTTGCAAATATTAACATTGCTCTTTTTCTAACCCAGTAATTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTATTTGCAAATATTAACATTGCTCTTTTTCTAACCCAGTAATTA  991

seq1  AGTAGATCTAGCCTTCACTTTCTCTCTCAAGTAATGCTCATTCTACTTGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATCTAGCCTTCACTTTCTCTCTCAAGTAATGCTCATTCTACTTGT  1041

seq1  AAATTGTAATGCTATCAGATCAATATAATGAATTC  1082
      |||||||||||||||||||||||||||||||||||
seq2  AAATTGTAATGCTATCAGATCAATATAATGAATTC  1076