BAC Information

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BAC

Clone NameB6Ng01-072E22
Chromosome3 (Build37)
Map Location 141,801,485 - 141,936,474
singlet/doubletdoublet
Overlap geneGabarapl2-ps3, Pdlim5
Upstream genePdha2, Unc5c, LOC100039923, Bmpr1b
Downstream geneGbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072E22.bB6Ng01-072E22.g
ACCDH889761DH889762
length1,114854
definitionDH889761|Mus musculus domesticus DNA, BAC clone: B6Ng01-072E22, 5' end.DH889762|Mus musculus domesticus DNA, BAC clone: B6Ng01-072E22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,801,485 - 141,802,612)(141,935,619 - 141,936,474)
sequence
gaattctgtggcacttaggcaaagtcaggctgtgtagacccctggcctct
cctaccaccatgtctgctctaggttcgtgtctcttcacatcctctctcct
ccacacttgaagctccagctcaaaccctacagactccaccgagcacctct
gaaaaggtgcctgcctctacctctccttttccccaactcccatcagatgc
ctttcggagaatggctgatggctgcattctttttatcactgttcactaac
tatgttttcttgtgaacacttttcataaacttcaagttctttaaggacca
ggatcattaccagaaaacaagagtatgattacaaccaactctaagctttt
caatccccaaaccacccagttaaagctaacacttgtgagattttcttctt
acagagaagcatgctcaaggtgaaaggtggcgaaggactggcatgaagtc
acaccagtaatgagtggagaggcgagccaaatggttctggcatccaaccc
ctctcctcttcgactgcccacttactcgacaagagtagctggctcaaagt
aagtgcttaatagactctgtcttactcactaaacagccatttgctaacca
aggaaaataataaaacaagggaaagaccttaaaatagatttggttcccac
cgcaagtaaatatctaaataatccttagagtaaacttctgtgattggatt
atttaccagtcctcaaacagcacaaatcgtctcccatagattccttaaaa
caaactctaaactaaaacaaaacttcatgtctgagtcgaaaagttctttc
caaagaaaatgagctctgcttataagtcagtgaatctaccaaaagagcga
ctcctggctcagtctggccaacgaggccgtgtaaaccgtctggaacttcc
agtagacacaaccacgaaaggacggcttcttcaaagggcagcattaaagc
cagggagacatttcaggccatactgcagctcctcctacccaaatcagtgc
gaccagattcattttagagtgcaattctgacttatgaaatgctcatgaaa
cagaagagggatcagaaattaaagcttaaatcaggttaaatgcatgaaat
caagtgtttttttt
gaattcaagttgagttttgaacaagtcagcagtgttactgcctacttcct
catgcctgtgtcacatgactgtcacaaatagaaacagtgactagaaccta
gggacgtacgtaaaaatggagttttttcttgttatttatcagaattggga
tttttttaaacctatattgaattcacttttgtttgtttgaagagctaggg
atgagtccctgggcgtcatacatcccaggcatatgccgtaccactgagct
acatcgtacagcctcaatatttatgtattaaaattttatttgtgaaagat
tcatattatatataaataataagtggttagatgagtatttttaaaccttt
gtaaatttaatagtaatagtttaaaaatatatacctgtgtttttgtaggt
gacctaatttgctatgtaatggtttttctacattcctagtaagttatgat
caccagattaggtaaacttaaatcactagatgcaaatatgtgtataaaaa
tattactgtcttaccaaatatagtaaaacatatttttcatgaaggcacag
agggccattttgtgttgaaatacattaattagcctaatcaaacacagaat
acaaacgatcaatttgctggaatataagcagtgctttgctacgtcaggct
gtatcgtccattgtacttagttgtatggtgtggtgtgggtggctctggtg
tatgtagtgtgtaccccaccggggtatgagttctacggggctaccctttt
cagttttatgcttctgctttttgcaagaagatcttgtatgactctggtgg
acttcaaattatgatgcttctgtctccccttccttacagctatgatgatg
ggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_141801485_141802612
seq2: B6Ng01-072E22.b_44_1157

seq1  GAATTCTGTGGCACTTAGGCAAAGTCAGGCTGTGTAGACCCCTGGCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGCACTTAGGCAAAGTCAGGCTGTGTAGACCCCTGGCCTCT  50

seq1  CCTACCACCATGTCTGCTCTAGGTTCGTGTCTCTTCACATCCTCTCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCACCATGTCTGCTCTAGGTTCGTGTCTCTTCACATCCTCTCTCCT  100

seq1  CCACACTTGAAGCTCCAGCTCAAACCCTACAGACTCCACCGAGCACCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTTGAAGCTCCAGCTCAAACCCTACAGACTCCACCGAGCACCTCT  150

seq1  GAAAAGGTGCCTGCCTCTACCTCTCCTTTTCCCCAACTCCCATCAGATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGTGCCTGCCTCTACCTCTCCTTTTCCCCAACTCCCATCAGATGC  200

seq1  CTTTCGGAGAATGGCTGATGGCTGCATTCTTTTTATCACTGTTCACTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCGGAGAATGGCTGATGGCTGCATTCTTTTTATCACTGTTCACTAAC  250

seq1  TATGTTTTCTTGTGAACACTTTTCATAAACTTCAAGTTCTTTAAGGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTCTTGTGAACACTTTTCATAAACTTCAAGTTCTTTAAGGACCA  300

seq1  GGATCATTACCAGAAAACAAGAGTATGATTACAACCAACTCTAAGCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATTACCAGAAAACAAGAGTATGATTACAACCAACTCTAAGCTTTT  350

seq1  CAATCCCCAAACCACCCAGTTAAAGCTAACACTTGTGAGATTTTCTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCCAAACCACCCAGTTAAAGCTAACACTTGTGAGATTTTCTTCTT  400

seq1  ACAGAGAAGCATGCTCAAGGTGAAAGGTGGCGAAGGACTGGCATGAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAGCATGCTCAAGGTGAAAGGTGGCGAAGGACTGGCATGAAGTC  450

seq1  ACACCAGTAATGAGTGGAGAGGCGAGCCAAATGGTTCTGGCATCCAACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGTAATGAGTGGAGAGGCGAGCCAAATGGTTCTGGCATCCAACCC  500

seq1  CTCTCCTCTTCGACTGCCCACTTACTCGACAAGAGTAGCTGGCTCAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCTTCGACTGCCCACTTACTCGACAAGAGTAGCTGGCTCAAAGT  550

seq1  AAGTGCTTAATAGACTCTGTCTTACTCACTAAACAGCCATTTGCTAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTTAATAGACTCTGTCTTACTCACTAAACAGCCATTTGCTAACCA  600

seq1  AGGAAAATAATAAAACAAGGGAAAGACCTTAAAATAGATTTGGTTCCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATAATAAAACAAGGGAAAGACCTTAAAATAGATTTGGTTCCCAC  650

seq1  CGCAAGTAAATATCTAAATAATCCTTAGAGTAAACTTCTGTGATTGGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAGTAAATATCTAAATAATCCTTAGAGTAAACTTCTGTGATTGGATT  700

seq1  ATTTACCAGTCCTCAAACAGCACAAATCGTCTCCCATAGATTCCTTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCAGTCCTCAAACAGCACAAATCGTCTCCCATAGATTCCTTAAAA  750

seq1  CAAACTCTAAACTAAAACAAAACTTCATGTCTGAGTCGAAAAGTTCTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTAAACTAAAACAAAACTTCATGTCTGAGTCGAAAAGTTCTTTC  800

seq1  CAAAGAAAATGAGCTCTGCTTATAAGTCAGTGAATCTACCAAAAGAGCGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAATGAGCTCTGCTTATAAGTCAGTGAATCTACCAAAAGAGCGA  850

seq1  CTCCTGGCTCAGTCTGGCCAACGAGGCCGTGTAAACCGTCTGGAACTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCTCAGTCTGGCCAACGAGGCCGTGTAAACCGTCTGGAACTTCC  900

seq1  AGTAGACACAACCACGAAAGGACGGCTTCTTCAAAGGGCAGCATTAAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACACAACCACGAAAGGACGGCTTCTTCAAAGGGCAGCATTAAAGC  950

seq1  CAGGGAGACAATTTCAGGGCCATACTGCAGCTCCTCCTAACCCAAATCAG  1000
      ||||||||| |||||| ||||||||||||||||||||| |||||||||||
seq2  CAGGGAGAC-ATTTCA-GGCCATACTGCAGCTCCTCCT-ACCCAAATCAG  997

seq1  TGCGACCAGATTCCATTTTAGAGTGCAATTCTGAACTTAATGAAATGCTC  1050
      |||||||||||| |||||||||||||||||||| |||| |||||||||||
seq2  TGCGACCAGATT-CATTTTAGAGTGCAATTCTG-ACTT-ATGAAATGCTC  1044

seq1  ATGAAACCAGAGAGGGGAATCAGAAATTAAAAGCTTAAAATCAGTTTAAA  1100
      |||||||   ||||||  |||||||||| ||||||| ||||||| |||||
seq2  ATGAAACAGAAGAGGG--ATCAGAAATT-AAAGCTT-AAATCAGGTTAAA  1090

seq1  TTGCATGAAAATCAAGGTTGTTTTTTTT  1128
       |||||| ||||||||  ||||||||||
seq2  -TGCATG-AAATCAAG--TGTTTTTTTT  1114

seq1: chr3_141935619_141936474
seq2: B6Ng01-072E22.g_69_922 (reverse)

seq1  AACCCATCATCATAGCTGCTAGGGAGGTGGAGACAGAAGCATCATTAGTT  50
      |||||||||||||||||| || ||| | |||||||||||||||| || ||
seq2  AACCCATCATCATAGCTG-TAAGGAAGGGGAGACAGAAGCATCA-TAATT  48

seq1  TGAGGTCCGCCAGAGTCATACAAGATCCTTCTTGCAAAAAGCAGAAGCAT  100
      ||| |||| ||||||||||||||||| |||||||||||||||||||||||
seq2  TGAAGTCCACCAGAGTCATACAAGAT-CTTCTTGCAAAAAGCAGAAGCAT  97

seq1  AAAACTGAAAAGGGTAGCCCCGTAGAACTCATA-CCCGGTGGGGTACACA  149
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAACTGAAAAGGGTAGCCCCGTAGAACTCATACCCCGGTGGGGTACACA  147

seq1  CTACATACACCAGAGCCACCCACACCACACCATACAACTAAGTACAATGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATACACCAGAGCCACCCACACCACACCATACAACTAAGTACAATGG  197

seq1  ACGATACAGCCTGACGTAGCAAAGCACTGCTTATATTCCAGCAAATTGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATACAGCCTGACGTAGCAAAGCACTGCTTATATTCCAGCAAATTGAT  247

seq1  CGTTTGTATTCTGTGTTTGATTAGGCTAATTAATGTATTTCAACACAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGTATTCTGTGTTTGATTAGGCTAATTAATGTATTTCAACACAAAA  297

seq1  TGGCCCTCTGTGCCTTCATGAAAAATATGTTTTACTATATTTGGTAAGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTCTGTGCCTTCATGAAAAATATGTTTTACTATATTTGGTAAGAC  347

seq1  AGTAATATTTTTATACACATATTTGCATCTAGTGATTTAAGTTTACCTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATATTTTTATACACATATTTGCATCTAGTGATTTAAGTTTACCTAA  397

seq1  TCTGGTGATCATAACTTACTAGGAATGTAGAAAAACCATTACATAGCAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGATCATAACTTACTAGGAATGTAGAAAAACCATTACATAGCAAA  447

seq1  TTAGGTCACCTACAAAAACACAGGTATATATTTTTAAACTATTACTATTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCACCTACAAAAACACAGGTATATATTTTTAAACTATTACTATTA  497

seq1  AATTTACAAAGGTTTAAAAATACTCATCTAACCACTTATTATTTATATAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACAAAGGTTTAAAAATACTCATCTAACCACTTATTATTTATATAT  547

seq1  AATATGAATCTTTCACAAATAAAATTTTAATACATAAATATTGAGGCTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAATCTTTCACAAATAAAATTTTAATACATAAATATTGAGGCTGT  597

seq1  ACGATGTAGCTCAGTGGTACGGCATATGCCTGGGATGTATGACGCCCAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGTAGCTCAGTGGTACGGCATATGCCTGGGATGTATGACGCCCAGG  647

seq1  GACTCATCCCTAGCTCTTCAAACAAACAAAAGTGAATTCAATATAGGTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATCCCTAGCTCTTCAAACAAACAAAAGTGAATTCAATATAGGTTT  697

seq1  AAAAAAATCCCAATTCTGATAAATAACAAGAAAAAACTCCATTTTTACGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCCCAATTCTGATAAATAACAAGAAAAAACTCCATTTTTACGT  747

seq1  ACGTCCCTAGGTTCTAGTCACTGTTTCTATTTGTGACAGTCATGTGACAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCCTAGGTTCTAGTCACTGTTTCTATTTGTGACAGTCATGTGACAC  797

seq1  AGGCATGAGGAAGTAGGCAGTAACACTGCTGACTTGTTCAAAACTCAACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGAGGAAGTAGGCAGTAACACTGCTGACTTGTTCAAAACTCAACT  847

seq1  TGAATTC  856
      |||||||
seq2  TGAATTC  854