BAC Information

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BAC

Clone NameB6Ng01-072F04
Chromosome3 (Build37)4 (Build37)
Map Location 41,059,224 - 41,059,737100,382,039 - 100,383,186
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072F04.bB6Ng01-072F04.g
ACCDH889772DH889773
length1,0011,148
definitionDH889772|Mus musculus domesticus DNA, BAC clone: B6Ng01-072F04, 5' end.DH889773|Mus musculus domesticus DNA, BAC clone: B6Ng01-072F04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,737)(100,382,039 - 100,383,186)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatcggttggtggcct
ttttgtcttattgatggtgtcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaattctcaatcttatagcataggccattgctgtt
ctattcaggaattttttccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataggaatggatcaattcgc
attcttctacatgataaccaccagttgtgccagcaccatttgttgaaaat
gctgttttttcttccacaggatagttttagctcccttgtcgaagatcaag
tgaccataggtgtgtgggttcatttctgggtcttcaattctattccattg
gtctacttgtctgtcactataccagtaccatgcagtttttatcacaattg
ctctgtagtaaagctttaggtcaggcattgtgagtccaccagaggttctt
ttatccttgagaagagtttttgctatcctaggttttttgttattccagat
gaatttgcagattgctctttctaattcgttgaagaattgagttggaattt
tgatggggattgcattgagtctgtacattgcttttggcaagatagccatt
tttacaatgttgatcctgccaatccatgagcatgggagatctttccatct
tctgagatcttcttaaatttctttcttcagagacttgaagttcttatcat
acagatctttcacttccttagttagagtcacaccaggtattttatattat
ttgtgactatgagcggtgttttttttccattttttatagtatttcgctca
t
gaattcctaagagttaatgatatttgataaaattcccaagaaatggttgc
taatacatgatcattaacattcctgagttgccctccgagacatgaccaac
agttgcaggcgacaaggctcggaagtatgtgtttaagtagctcttggacc
tcagcaggcttgtcatctggaaggtaaggggactgaggtgatgcatatga
tgagcaaactcatggcaaacctgtcatcagactagtggcctttacctggg
acaacggtctgcctgaggtagttaggattgttcctctctgtgaaccattt
catggtgatgggagacgctagacgtaacaaggagtaacaatgaacacaga
ggacaggtactgaggtcgcagtggagcaatggagaatccctagcagctga
cattagcagagtgaatcttgactgttgtgggaaatattaaaaaatcggca
ctaatcccccactattcccagcttctctctgcccgcagtcttgccacctc
ttggttagccccagactgcagtcttccccactcagaaggttcgcctgcct
cagagtcacccgtatcttctcagccatccaccccatgtggttggtggtct
caaatcccagtaacctagtaaaatcaaaactttagaagcttataactaat
cagtaagatttatatatatcaataaattctcaattctcaagatgcccaca
caatgaactcagagccaattgataatgatataaattgcccaccttgataa
gacaaattgtcctgtaatcatccattccttataagagaatcatagccacc
tgtggctatttaaagtcatggaatctggatcgtcctgttcttcttccatc
ttccttccttctctctgttccaggctctgaaactcttactccacctccct
tcccctgtataatcacaggcttcttgtgtattaatatttaaattgattgg
acagggaaaattctgctacacttgactttgttctttttgtctttcagagt
attccttttgagactttgagaagtgaaattgctttggacgtcagctttct
caaacagtaataataaggaacaactttgtgtgggagcattactgggtggc
aagcatcgagtacaagattttctgggacatggcgggtacatactcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-072F04.b_52_567 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      |||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACTATCCT  50

seq1  GTGGAA-AAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTG  99
      |||||| |||| |||||||||||||||||||||||||||||||||||| |
seq2  GTGGAAGAAAAAACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTGG  100

seq1  TTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAA  149
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTATCATGTAGAAGAATGCGAATTGATCCATTCCTATCTCCTTGTACTAA  150

seq1  GGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGA  199
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  GGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGA  200

seq1  AACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGG  249
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGG  250

seq1  GAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAAT  299
       ||||||||||| |||||||||||||||| | |||| |||||||||||||
seq2  AAAAAATTCCTGAATAGAACAGCAATGGCCTATGCTATAAGATTGAGAAT  300

seq1  AGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACA  349
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACA  350

seq1  CCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACC  398
      || ||||||||||||||||| ||||||| |||||||||||||||||||||
seq2  CCATCAATAAGACAAAAAGGCCACCAACCGATTGGGAAAGGATCTTTACC  400

seq1  TATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAA  448
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCAA  450

seq1  GAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAG  498
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAG  500

seq1  AGCTAAACAAAGAATT  514
      ||||||||||||||||
seq2  AGCTAAACAAAGAATT  516

seq1: chr4_100382039_100383186
seq2: B6Ng01-072F04.g_67_1214 (reverse)

seq1  AGTGAGTATGTACCACGCATGT-CCAGAAAATC-TGTACTCCGATGCTTG  48
      ||||||||||||||   ||||| |||||||||| |||||| |||||||||
seq2  AGTGAGTATGTACCCGCCATGTCCCAGAAAATCTTGTACT-CGATGCTTG  49

seq1  GCACACAGTAAACGCT---ACACAACAGTTTGTTCTTATTATTACTGTTT  95
       ||| |||| || |||   |||||| ||||  | ||||||||||||||||
seq2  CCACCCAGT-AATGCTCCCACACAA-AGTTGTTCCTTATTATTACTGTTT  97

seq1  GAGAAAGCTGACGTTCAAAAGCAATTTCACTTCTCAAAGTCTCAAAAGG-  144
      ||||||||||||| || |||||||||||||||||||||||||||||||| 
seq2  GAGAAAGCTGACG-TCCAAAGCAATTTCACTTCTCAAAGTCTCAAAAGGA  146

seq1  ATACTCTGAAAGAACAAAAAGAACAAAGTCAAGTGTAGCAGAATTTTCCC  194
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATACTCTGAAAG-ACAAAAAGAACAAAGTCAAGTGTAGCAGAATTTTCCC  195

seq1  TGTCCAATCAATTTAAATATTAATACAACAAGAAGCCTGTGATTATACAG  244
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTCCAATCAATTTAAATATTAATAC-ACAAGAAGCCTGTGATTATACAG  244

seq1  GGGAAGGGAGGTGGAGTAAGAGTTTCAGAGCCTGGAACAGAGAGAAGGAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGGAGGTGGAGTAAGAGTTTCAGAGCCTGGAACAGAGAGAAGGAA  294

seq1  GGAAGATGGAAGAAGAACAGGACGATCCAGATTCCATGACTTTAAATAGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATGGAAGAAGAACAGGACGATCCAGATTCCATGACTTTAAATAGC  344

seq1  CACAGGTGGCTATGATTCTCTTATAAGGAATGGATGATTACAGGACAATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTGGCTATGATTCTCTTATAAGGAATGGATGATTACAGGACAATT  394

seq1  TGTCTTATCAAGGTGGGCAATTTATATCATTATCAATTGGCTCTGAGTTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTATCAAGGTGGGCAATTTATATCATTATCAATTGGCTCTGAGTTC  444

seq1  ATTGTGTGGGCATCTTGAGAATTGAGAATTTATTGATATATATAAATCTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTGGGCATCTTGAGAATTGAGAATTTATTGATATATATAAATCTT  494

seq1  ACTGATTAGTTATAAGCTTCTAAAGTTTTGATTTTACTAGGTTACTGGGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTAGTTATAAGCTTCTAAAGTTTTGATTTTACTAGGTTACTGGGA  544

seq1  TTTGAGACCACCAACCACATGGGGTGGATGGCTGAGAAGATACGGGTGAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACCACCAACCACATGGGGTGGATGGCTGAGAAGATACGGGTGAC  594

seq1  TCTGAGGCAGGCGAACCTTCTGAGTGGGGAAGACTGCAGTCTGGGGCTAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGCAGGCGAACCTTCTGAGTGGGGAAGACTGCAGTCTGGGGCTAA  644

seq1  CCAAGAGGTGGCAAGACTGCGGGCAGAGAGAAGCTGGGAATAGTGGGGGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGGTGGCAAGACTGCGGGCAGAGAGAAGCTGGGAATAGTGGGGGA  694

seq1  TTAGTGCCGATTTTTTAATATTTCCCACAACAGTCAAGATTCACTCTGCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGCCGATTTTTTAATATTTCCCACAACAGTCAAGATTCACTCTGCT  744

seq1  AATGTCAGCTGCTAGGGATTCTCCATTGCTCCACTGCGACCTCAGTACCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGCTGCTAGGGATTCTCCATTGCTCCACTGCGACCTCAGTACCT  794

seq1  GTCCTCTGTGTTCATTGTTACTCCTTGTTACGTCTAGCGTCTCCCATCAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGTGTTCATTGTTACTCCTTGTTACGTCTAGCGTCTCCCATCAC  844

seq1  CATGAAATGGTTCACAGAGAGGAACAATCCTAACTACCTCAGGCAGACCG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATGGTTCACAGAGAGGAACAATCCTAACTACCTCAGGCAGACCG  894

seq1  TTGTCCCAGGTAAAGGCCACTAGTCTGATGACAGGTTTGCCATGAGTTTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCAGGTAAAGGCCACTAGTCTGATGACAGGTTTGCCATGAGTTTG  944

seq1  CTCATCATATGCATCACCTCAGTCCCCTTACCTTCCAGATGACAAGCCTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCATATGCATCACCTCAGTCCCCTTACCTTCCAGATGACAAGCCTG  994

seq1  CTGAGGTCCAAGAGCTACTTAAACACATACTTCCGAGCCTTGTCGCCTGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTCCAAGAGCTACTTAAACACATACTTCCGAGCCTTGTCGCCTGC  1044

seq1  AACTGTTGGTCATGTCTCGGAGGGCAACTCAGGAATGTTAATGATCATGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTGGTCATGTCTCGGAGGGCAACTCAGGAATGTTAATGATCATGT  1094

seq1  ATTAGCAACCATTTCTTGGGAATTTTATCAAATATCATTAACTCTTAGGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAACCATTTCTTGGGAATTTTATCAAATATCATTAACTCTTAGGA  1144

seq1  ATTC  1148
      ||||
seq2  ATTC  1148