BAC Information

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BAC

Clone NameB6Ng01-072G21
Chromosome3 (Build37)13 (Build37)
Map Location 41,059,197 - 41,059,737116,226,987 - 116,228,071
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072G21.bB6Ng01-072G21.g
ACCDH889850DH889851
length9951,087
definitionDH889850|Mus musculus domesticus DNA, BAC clone: B6Ng01-072G21, 5' end.DH889851|Mus musculus domesticus DNA, BAC clone: B6Ng01-072G21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,197 - 41,059,737)(116,226,987 - 116,228,071)
sequence
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggagtccactttcttgagttctttatatatattggacattagtcccc
tatctgatttgagataggtaaagatcctttcccaatctgttggtggcctt
tttgtcttattgacggtgtcttttgccttgcagaagctttgcagtttcat
gaggtccaatttgtcaattcttgatcttacagcacaagccattgctgttc
tattcaggaatttttcccctgtgcccatctcttcgaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtggagttccttgat
ccacttagatttgaccttagtacaaggagataggaatggatcgattcgca
atcttctacatgataaccatcagttgtgccagcaccatttgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgccactataccagtaccatgcagtttttatcataattgct
ctatagtaaagctttaggtcatcagccttccctaatttaacaataggagt
cacctgcttttgtccattggttgggtgcaaatatctgcatctgactcttt
cagttgtttcctgggtctttcggaggatagttattctaggtccctttttg
tgagtgctccatagcctcagtaataattttaggctttaggacctccgctt
gagctggatcccactttgtgcctgttgctggaccttcttttcctcagctc
ctctccatttccatctttgcagttctttcagaagaacaattatgagtcag
agatatgactgtgggatcgcaatcccatcctttacttgatgccctgtcgt
cctgctggaggtgggctctataagttccctctccctactgtctgg
gaattcttcccatgcggtttctcaacagaaatgcttccccgtaatttcct
ccacaaatgataaaggatgtttttcatttggacccaagcgtgacagcaaa
catacacgagcaaagacacccagagcctgagactcttctactgaggcttc
aacccaggtccaagcatggattccaccactgataatgaatggtcagtcag
aaggaaagacagtttgcagataacacagaacttcttaggggaaagttcac
aagatgggcaaaaaggggggtgtcaaggctgaaaagttttcctttttggc
tcacagttgatctttgctagtggagaccactgatttatgaattaaagaat
atccaatgtgttcaacaaacatctttccccacctggcatagggcagagaa
gtcaagaatctagagatacaagtcactataattctggaaatcaaatttct
gtagtgatgggagttgtcccatttcaaccaaaaatgggggagtttgcaaa
atgtcatggcccccggctaacagtaaggccgtcagcagtctgtgctccac
tacctgtaaaattcttgtcttttcctagtctaccatgacagtccccagca
cccatgtggtctacagaatttctcttctgtattctagggactttctctca
cactaaatagaagtgttagtcctgcctttaacatctcacagggttcctgt
aactttccaacaatagatcctattgttgacagatgctggtgtgaaaggaa
gtggttaaattggactcccgaagctctcctgtaagtatttaaatgcaatc
atggttgaccagcatttgaggttcgcttttctctctgttatcaaaacctt
tgttcagaccaactattctgtttattttgacctccctgggtagaattaga
gccacatagcactccctgtacttcactttgaatccattacagatgcaagc
actcaaatccacgataaagctatgcttgtattctaaatttgaaactaaaa
gataaccttgactttttatggaggtcaattttcattcattaggcaaattg
ccacatttgaggaaatagcaaatagcatttttcatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059197_41059737
seq2: B6Ng01-072G21.b_46_586 (reverse)

seq1  AATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGAT  50
      ||||||||||||||| |||||| ||| |||||||||||||||||||||||
seq2  AATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGAT  50

seq1  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCA  100
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100

seq1  ACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATT  150
      |||||||||||||||||||||| | |||||||||||||||| ||||||| 
seq2  ACAAATGGTGCTGGCACAACTGATGGTTATCATGTAGAAGATTGCGAATC  150

seq1  GATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200

seq1  ACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250

seq1  AAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCA  300
      ||||||| ||||| |||| ||||||||||||||||||| |||||||||||
seq2  AAAGCCTCGAAGAGATGGGCACAGGGGAAAAATTCCTGAATAGAACAGCA  300

seq1  ATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACT  350
      |||||||||||||||||||  ||||| ||||||| |||||||||||||||
seq2  ATGGCTTGTGCTGTAAGATCAAGAATTGACAAATTGGACCTCATGAAACT  350

seq1  GCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CAC  399
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGGCCAC  400

seq1  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  449
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  CAACAGATTGGGAAAGGATCTTTACCTATCTCAAATCAGATAGGGGACTA  450

seq1  ATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAA  499
      || |||||||||||| ||||||||||||| ||||| ||||||||||||||
seq2  ATGTCCAATATATATAAAGAACTCAAGAAAGTGGACTCCAGAAAATCAAA  500

seq1  TAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  541
      |||||||||| |||||||||||||||||||||||||||||||
seq2  TAACCCCATT-AAAAATGGGGCTCAGAGCTAAACAAAGAATT  541

seq1: chr13_116226987_116228071
seq2: B6Ng01-072G21.g_64_1150 (reverse)

seq1  AGATG-AAAATGCTTAATTTGCT-TATTCTCAAATGTGGCAATTTGCCTA  48
      ||||| ||||||||  ||||||| | | ||||||||||||||||||||||
seq2  AGATGAAAAATGCT--ATTTGCTATTTCCTCAAATGTGGCAATTTGCCTA  48

seq1  ATGAATG-AAATTGA-CTTCATAAAATGTCAAGGTTATCTTTTAGTTTCA  96
      ||||||| ||||||| || ||||||| |||||||||||||||||||||||
seq2  ATGAATGAAAATTGACCTCCATAAAAAGTCAAGGTTATCTTTTAGTTTCA  98

seq1  AATTTAGAATACAAGCATAGCTTTATCGTGGATTTGAGTGCTTGCATCTG  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGAATACAAGCATAGCTTTATCGTGGATTTGAGTGCTTGCATCTG  148

seq1  TAATGGATTCAAAGTGAAGTACAGGGAGTGCTATGTGGCTCTAATTCTAC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGATTCAAAGTGAAGTACAGGGAGTGCTATGTGGCTCTAATTCTAC  198

seq1  CCAGGGAGGTCAAAATAAACAGAATAGTTGGTCTGAACAAAGGTTTTGAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGGTCAAAATAAACAGAATAGTTGGTCTGAACAAAGGTTTTGAT  248

seq1  AACAGAGAGAAAAGCGAACCTCAAATGCTGGTCAACCATGATTGCATTTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAGAAAAGCGAACCTCAAATGCTGGTCAACCATGATTGCATTTA  298

seq1  AATACTTACAGGAGAGCTTCGGGAGTCCAATTTAACCACTTCCTTTCACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTACAGGAGAGCTTCGGGAGTCCAATTTAACCACTTCCTTTCACA  348

seq1  CCAGCATCTGTCAACAATAGGATCTATTGTTGGAAAGTTACAGGAACCCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCTGTCAACAATAGGATCTATTGTTGGAAAGTTACAGGAACCCT  398

seq1  GTGAGATGTTAAAGGCAGGACTAACACTTCTATTTAGTGTGAGAGAAAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATGTTAAAGGCAGGACTAACACTTCTATTTAGTGTGAGAGAAAGT  448

seq1  CCCTAGAATACAGAAGAGAAATTCTGTAGACCACATGGGTGCTGGGGACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGAATACAGAAGAGAAATTCTGTAGACCACATGGGTGCTGGGGACT  498

seq1  GTCATGGTAGACTAGGAAAAGACAAGAATTTTACAGGTAGTGGAGCACAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGTAGACTAGGAAAAGACAAGAATTTTACAGGTAGTGGAGCACAG  548

seq1  ACTGCTGACGGCCTTACTGTTAGCCGGGGGCCATGACATTTTGCAAACTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGACGGCCTTACTGTTAGCCGGGGGCCATGACATTTTGCAAACTC  598

seq1  CCCCATTTTTGGTTGAAATGGGACAACTCCCATCACTACAGAAATTTGAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTTTTGGTTGAAATGGGACAACTCCCATCACTACAGAAATTTGAT  648

seq1  TTCCAGAATTATAGTGACTTGTATCTCTAGATTCTTGACTTCTCTGCCCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAATTATAGTGACTTGTATCTCTAGATTCTTGACTTCTCTGCCCT  698

seq1  ATGCCAGGTGGGGAAAGATGTTTGTTGAACACATTGGATATTCTTTAATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGGTGGGGAAAGATGTTTGTTGAACACATTGGATATTCTTTAATT  748

seq1  CATAAATCAGTGGTCTCCACTAGCAAAGATCAACTGTGAGCCAAAAAGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATCAGTGGTCTCCACTAGCAAAGATCAACTGTGAGCCAAAAAGGA  798

seq1  AAACTTTTCAGCCTTGACACCCCCCTTTTTGCCCATCTTGTGAACTTTCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTCAGCCTTGACACCCCCCTTTTTGCCCATCTTGTGAACTTTCC  848

seq1  CCTAAGAAGTTCTGTGTTATCTGCAAACTGTCTTTCCTTCTGACTGACCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAAGTTCTGTGTTATCTGCAAACTGTCTTTCCTTCTGACTGACCA  898

seq1  TTCATTATCAGTGGTGGAATCCATGCTTGGACCTGGGTTGAAGCCTCAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATCAGTGGTGGAATCCATGCTTGGACCTGGGTTGAAGCCTCAGT  948

seq1  AGAAGAGTCTCAGGCTCTGGGTGTCTTTGCTCGTGTATGTTTGCTGTCAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGTCTCAGGCTCTGGGTGTCTTTGCTCGTGTATGTTTGCTGTCAC  998

seq1  GCTTGGGTCCAAATGAAAAACATCCTTTATCATTTGTGGAGGAAATTACG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGTCCAAATGAAAAACATCCTTTATCATTTGTGGAGGAAATTACG  1048

seq1  GGGAAGCATTTCTGTTGAGAAACCGCATGGGAAGAATTC  1085
      |||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCATTTCTGTTGAGAAACCGCATGGGAAGAATTC  1087