BAC Information

Click to search

BAC

Clone NameB6Ng01-072N16
Chromosome3 (Build37)
Map Location 99,826,584 - 99,927,519
singlet/doubletdoublet
Overlap geneSpag17
Upstream geneLOC668557, Wars2, Tbx15, M6pr-ps, LOC623045
Downstream geneWdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072N16.bB6Ng01-072N16.g
ACCDH890148DH890149
length5151,155
definitionDH890148|Mus musculus domesticus DNA, BAC clone: B6Ng01-072N16, 5' end.DH890149|Mus musculus domesticus DNA, BAC clone: B6Ng01-072N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,926,999 - 99,927,519)(99,826,584 - 99,827,752)
sequence
caggaaataaatgggactggcggcaaagttctgaaggttgttagagtttg
tgtctgaaatatccccaagggccatatagtaaaagattggtgttaaccca
tggcactatcaggagctgagagaacggtaaggaagccaggtggtagtggt
gcatgcttataatcccagcactcacggagacggctgtcagttatgaggcc
agcctggactatacagtgagttccagggcagcaagagctacgcagagaaa
ccctgtctcgaaaacaacaacaacaaaaaccttatggatctggacttagt
gcaaagcaatgaggtcattgaagggggtgtgggctccttttctgtttctc
tgcttcctggcagccatcaagagagcattttgctctcccatgtgtccctg
tcctgatactccacagaccctgaaaacacagggccaagtgattacaaagt
gacacccctaaagctgacacaaaggcaaaaaccaggtgctgcatgtgtgg
gggtgggtgggtggg
gaattccttcagttccctctcccccctccatggaacagcactaaacgact
cgccactattcacgagcttatgcatttctgtacgaacggtgagtatcttg
ctttggctgatacccaatttaattaatagcccttaaattgcacccttatt
cccaaaaagcattttgatcattgaaaggccttccaggggccttggcgatg
tcactagccatgtggaaactctggcgcgtaacattatgcactttgatgta
atagattttctttccattgtgttttcttaatcccctgagccccacagttc
cccctggtgtcattagagacgatgcaatccatcctacttaccaggaggaa
tggttcgtgtttctgcaaaaacttaaaaatgaataagaacctcttgtctc
aagttaccatagtccctttcccagaaaatagacaaatagacagacagaca
gataggtagatagaaacagatagaaataaataggcttcaccaaggaatgg
agccctttatcattgtagaaatccacacaagtcatatagcacagtggcat
tagctgtggaaggagaagcaaaagcccgagcaggagactttgccccaact
aagaaattatcagtctggagtctcatactccagcctcaagcacacaggtc
gcttttgacttctagaactgtgctcaaaggaaacttgaactatccttgtc
tctagcctgactcgatagattggacacaacacttatatgtgtctatctag
ctgtactgataaaatgcaatcactgaatgattctcagtagtagattggga
agtctccaagaaacttgcatctgcaccccatcctgaggagcacaaaggaa
accctgtcagaagcagatctccaccgcttaagtgggaagctgagtttcta
ctcaacatttgacagaagatgtcgaagcctggaccatctctctgtttatc
caatcagatggtatcctggggcttccccactagctgcaatgtggctaggg
tgagagaaaagaagagatcatggggtggtggattaatacaacctctcttg
tcagtgttctttttagaagcgaagtgtcattctctctgcatggtctcttg
ctccaatctttgagagctccttacggaatcagaatgtcctcatctgtctt
tacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_99926999_99927519
seq2: B6Ng01-072N16.b_44_564 (reverse)

seq1  CCCACCCACCCACCCCCACACATGCAGCACCTGGTTTTTGCCTTTGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCACCCACCCCCACACATGCAGCACCTGGTTTTTGCCTTTGTGTC  50

seq1  AGCTTTAGGGGTGTCACTTTGTAATCACTTGGCCCTGTGTTTTCAGGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAGGGGTGTCACTTTGTAATCACTTGGCCCTGTGTTTTCAGGGTC  100

seq1  TGTGGAGTATCAGGACAGGGACACATGGGAGAGCAAAATGCTCTCTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGTATCAGGACAGGGACACATGGGAGAGCAAAATGCTCTCTTGAT  150

seq1  GGCTGCCAGGAAGCAGAGAAACAGAAAAGGAGCCCACACCCCCTTCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCAGGAAGCAGAGAAACAGAAAAGGAGCCCACACCCCCTTCAATG  200

seq1  ACCTCATTGCTTTGCACTAAGTCCAGATCCATAAGGTTTTTGTTGTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATTGCTTTGCACTAAGTCCAGATCCATAAGGTTTTTGTTGTTGTT  250

seq1  GTTTTCGAGACAGGGTTTCTCTGCGTAGCTCTTGCTGCCCTGGAACTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCGAGACAGGGTTTCTCTGCGTAGCTCTTGCTGCCCTGGAACTCAC  300

seq1  TGTATAGTCCAGGCTGGCCTCATAACTGACAGCCGTCTCCGTGAGTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGTCCAGGCTGGCCTCATAACTGACAGCCGTCTCCGTGAGTGCTG  350

seq1  GGATTATAAGCATGCACCACTACCACCTGGCTTCCTTACCGTTCTCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATAAGCATGCACCACTACCACCTGGCTTCCTTACCGTTCTCTCAG  400

seq1  CTCCTGATAGTGCCATGGGTTAACACCAATCTTTTACTATATGGCCCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGATAGTGCCATGGGTTAACACCAATCTTTTACTATATGGCCCTTG  450

seq1  GGGATATTTCAGACACAAACTCTAACAACCTTCAGAACTTTGCCGCCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATTTCAGACACAAACTCTAACAACCTTCAGAACTTTGCCGCCAGT  500

seq1  CCCATTTATTTCCTGGAATTC  521
      |||||||||||||||||||||
seq2  CCCATTTATTTCCTGGAATTC  521

seq1: chr3_99826584_99827752
seq2: B6Ng01-072N16.g_69_1223

seq1  GAATTCCTTCAGTTCCCTCTCCCCCCTCCATGGAACAGCACTAAACGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAGTTCCCTCTCCCCCCTCCATGGAACAGCACTAAACGACT  50

seq1  CGCCACTATTCACGAGCTTATGCATTTCTGTACGAACGGTGAGTATCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACTATTCACGAGCTTATGCATTTCTGTACGAACGGTGAGTATCTTG  100

seq1  CTTTGGCTGATACCCAATTTAATTAATAGCCCTTAAATTGCACCCTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCTGATACCCAATTTAATTAATAGCCCTTAAATTGCACCCTTATT  150

seq1  CCCAAAAAGCATTTTGATCATTGAAAGGCCTTCCAGGGGCCTTGGCGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAAGCATTTTGATCATTGAAAGGCCTTCCAGGGGCCTTGGCGATG  200

seq1  TCACTAGCCATGTGGAAACTCTGGCGCGTAACATTATGCACTTTGATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGCCATGTGGAAACTCTGGCGCGTAACATTATGCACTTTGATGTA  250

seq1  ATAGATTTTCTTTCCATTGTGTTTTCTTAATCCCCTGAGCCCCACAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTTTCTTTCCATTGTGTTTTCTTAATCCCCTGAGCCCCACAGTTC  300

seq1  CCCCTGGTGTCATTAGAGACGATGCAATCCATCCTACTTACCAGGAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGTGTCATTAGAGACGATGCAATCCATCCTACTTACCAGGAGGAA  350

seq1  TGGTTCGTGTTTCTGCAAAAACTTAAAAATGAATAAGAACCTCTTGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCGTGTTTCTGCAAAAACTTAAAAATGAATAAGAACCTCTTGTCTC  400

seq1  AAGTTACCATAGTCCCTTTCCCAGAAAATAGACAAATAGACAGACAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACCATAGTCCCTTTCCCAGAAAATAGACAAATAGACAGACAGACA  450

seq1  GATAGGTAGATAGAAACAGATAGAAATAAATAGGCTTCACCAAGGAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTAGATAGAAACAGATAGAAATAAATAGGCTTCACCAAGGAATGG  500

seq1  AGCCCTTTATCATTGTAGAAATCCACACAAGTCATATAGCACAGTGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTTATCATTGTAGAAATCCACACAAGTCATATAGCACAGTGGCAT  550

seq1  TAGCTGTGGAAGGAGAAGCAAAAGCCCGAGCAGGAGACTTTGCCCCAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTGGAAGGAGAAGCAAAAGCCCGAGCAGGAGACTTTGCCCCAACT  600

seq1  AAGAAATTATCAGTCTGGAGTCTCATACTCCAGCCTCAAGCACACAGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTATCAGTCTGGAGTCTCATACTCCAGCCTCAAGCACACAGGTC  650

seq1  GCTTTTGACTTCTAGAACTGTGCTCAAAGGAAACTTGAACTATCCTTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGACTTCTAGAACTGTGCTCAAAGGAAACTTGAACTATCCTTGTC  700

seq1  TCTAGCCTGACTCGATAGATTGGACACAACACTTATATGTGTCTATCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCTGACTCGATAGATTGGACACAACACTTATATGTGTCTATCTAG  750

seq1  CTGTACTGATAAAATGCAATCACTGAATGATTCTCAGTAGTAGATTGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTGATAAAATGCAATCACTGAATGATTCTCAGTAGTAGATTGGGA  800

seq1  AGTCTCCAAGAAACTTGCATCTGCACCCCATCCTGAGGAGCACAAAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCAAGAAACTTGCATCTGCACCCCATCCTGAGGAGCACAAAGGAA  850

seq1  ACCCTGTCAGAAGCAGATCTCCACCGCTTAAGTGGGAAGCTGAGTTTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCAGAAGCAGATCTCCACCGCTTAAGTGGGAAGCTGAGTTTCTA  900

seq1  CTCAACATTTGACAGAAGATGTCGAAGCCTGGACCATCTCTCTGTTTATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACATTTGACAGAAGATGTCGAAGCCTGGACCATCTCTCTGTTTATC  950

seq1  CAATCAGATGGTTATCCTGGGGCTTCCCCACTAGCTGCAATGTGGCTAGG  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGATGG-TATCCTGGGGCTTCCCCACTAGCTGCAATGTGGCTAGG  999

seq1  GTGAGAGAACAGAAGAGATCAT-GGGTGGTGGTTTTAAATACAAACCTCT  1049
      ||||||||| |||||||||||| ||||||||| ||  ||||| |||||||
seq2  GTGAGAGAAAAGAAGAGATCATGGGGTGGTGGATT--AATAC-AACCTCT  1046

seq1  CTTGTCAGTGTTCTTTTTAGAAGCGAAGTGTTCAATTCTCTCTGCAT-GT  1098
      |||||||||||||||||||||||||||||||   ||||||||||||| ||
seq2  CTTGTCAGTGTTCTTTTTAGAAGCGAAGTGT--CATTCTCTCTGCATGGT  1094

seq1  CTCTGCCTCCCAAATCCTTTTGAGAGCTTCCCTAACCGAGAATCAAGAAT  1148
      ||||  ||||  ||||  ||||||||||  ||| ||   ||||| |||||
seq2  CTCTTGCTCC--AATC--TTTGAGAGCT--CCTTAC--GGAATC-AGAAT  1135

seq1  GTCCCTCATCTGTCTTTACAA  1169
      || ||||||||||||||||||
seq2  GT-CCTCATCTGTCTTTACAA  1155