BAC Information

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BAC

Clone NameB6Ng01-073E01
ChromosomeX (Build37)3 (Build37)
Map Location 38,622,766 - 38,623,186106,821,929 - 106,823,049
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039769
Downstream geneLOC385344, Gria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073E01.bB6Ng01-073E01.g
ACCDH890438DH890439
length9381,119
definitionDH890438|Mus musculus domesticus DNA, BAC clone: B6Ng01-073E01, 5' end.DH890439|Mus musculus domesticus DNA, BAC clone: B6Ng01-073E01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,622,766 - 38,623,186)(106,821,929 - 106,823,049)
sequence
gaattccagcctgacccgaatctgaacaaagccctagttgatggtgtttg
caggaggctggctccgtcactttctccgtctgtgtgtttattactgaatg
ttaatcagattcatcattaaggatttcatctgctacaagaatgcaaagaa
aaaaacccagatattttctcatatcctttcatttaaaattatttggctat
agggaattttgaatttgtaatgatttggctgaaatttgtcaacattttct
ttatggcttagagtatgcttcatatggaaatgttccttcctagtctaaga
ttgcaaacaattctcgtgtgtcttcttctttctttctttaactgtgtgtg
tgtgtgatgtattcaaatgtgtgtacaggcatatgcatgtatgtgtggag
gtcaaatgtcactcatttctcagaagccatacatgttgaaatttgttatt
gcttattttatttatttacaattcaaatgttgtcccccaaagtttggagc
tgtgacgaaaggatggaccatgtagagactgccatatccggggatccatc
ccataatcagcttccaaacgctgacaccattgcacacactagcaagattt
tgctgaaaggacccagatatagctctctcttgtgagactatgccggggcc
tagcaaacacagaagtggatgctcacagtcagctattggatggatcacag
ggctcccaatggaggagctagagaaagtacccaaggagctaaagggatct
gcaacccaataggtgaaacaacattatgaactaaccagtaccccggagct
cttgactctagctgcatatgtatcaaaagatggcctagtcggccatcact
ggaaagagaggcccattggacttgcaaactttatatgccccagtacaggg
gaatgccagggccaaaaagtgggagtgggtgggtaggg
gaattcactgtgatgagtgtgtctggctcagcagatccaggatactcagc
agataaggatgctgccagggaagtagccccggccggtataaagaggggtg
aggaaagtgctgggtaggcacttattcattgacttcaattgaattaaacg
gactcagagccaaacactgatacataactgcttctgtcctgcgaccagtt
catccattcaagtgagaagaaaggctgaacaccaacatttgacttccaac
aaaactagacaacatgtttagagcatgtcaaattaaacgtgtgtcaggtg
ctgcgatagatccataatgtctgatttaatccagtttgaactgtttattg
tcacccccttatcataaatcagaagattataggttcagagaaatttaaga
atgcaaaggcctagaattcaaacgtgtgtctttgcacgaaagagtccaga
gttcttcttatgtcatcaaatctcctctagaatttttctgcacatgcttt
gcacagactttatagcacaacaacttggaattaaagtcaacgtaaggagt
aaacaaaacagaagcagggacatgagcatttactaaaagaggcatatttt
taatccattgtgttaggtaaatctatggatatgaaaacaaatactttttg
ttttaagcaagtcatattacttagtgaaatttagaagtgtattgtggtaa
ttaacaattttatagaacttttaatagttttagttagtatattttgtgat
gaaaagtaatttaaaatgaaagttagtatgttaaaaacttataagacaga
gatgagttttaaattacctggtaaatttgatttttaaaaacacaatatat
aagtagaatgatacttactgcctggtgccctagaatttgcatatttgagg
atgaattaataatgttctaataaaagatggcctgagagttatagaaatta
acacaggaaattgctgagtaccttcaaactgaagttaaaatgcattcata
ctaagcctctccagagctgaaatgccactagatgcagagagcaactgtgg
gaattctgggcagaggtaggaagccaacttaagagcctccaccgtggatg
cttttggatatccatgcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_38622766_38623186
seq2: B6Ng01-073E01.b_564_981 (reverse)

seq1  CCCTCACCCACCCACTCCCAATTCTTGGCCCTGGCGATCTCCTGTACTGA  50
      |||| ||||||||||||||| || |||||||||||  || ||||||||| 
seq2  CCCT-ACCCACCCACTCCCACTTTTTGGCCCTGGCATTCCCCTGTACTGG  49

seq1  GGCATATAAAGTTTGCACGAACAATGGGGCTCTCTTTCCACTGATGGCCG  100
      ||||||||||||||||| |  ||||||| ||||||||||| |||||||||
seq2  GGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCG  99

seq1  ACTAGGCCAACTTCTGCTACATATGCAGCTAGAGACACGAGCTCTGAGGG  150
      ||||||||| ||| || ||||||||||||||||| || ||||||   |||
seq2  ACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTC--CGGG  147

seq1  GTACTGGTTAGTTCATATTGTCGTTCCACCTATAGGGTTGCAGAGCCCTT  200
      ||||||||||||||||| ||| ||| ||||||| |||||||||| |||||
seq2  GTACTGGTTAGTTCATAATGTTGTTTCACCTATTGGGTTGCAGATCCCTT  197

seq1  TAGCTCCTTGGTTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCC  250
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCC  247

seq1  ATCTAATAGCTGATTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCTGGC  300
      ||| ||||||||| |||||||||||||||||||||||||||||||| |||
seq2  ATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGC  297

seq1  ATAGTCTCACAAGAGACAGCTATATCAGGGTCCTTTCAGCATAATCTTGC  350
      |||||||||||||||| ||||||||| |||||||||||||| ||||||||
seq2  ATAGTCTCACAAGAGAGAGCTATATCTGGGTCCTTTCAGCAAAATCTTGC  347

seq1  TAGTGTATGCAATGATGTCAGCGTTTGGAAGCTGATCATGGGGTGGATCC  400
      |||||| ||||||| ||||||||||||||||||||| ||||| |||||||
seq2  TAGTGTGTGCAATGGTGTCAGCGTTTGGAAGCTGATTATGGGATGGATCC  397

seq1  CTGGATATGGCAGTTTCTAGA  421
      | |||||||||||| |||| |
seq2  CCGGATATGGCAGTCTCTACA  418

seq1: chr3_106821929_106823049
seq2: B6Ng01-073E01.g_66_1184

seq1  GAATTCACTGTGATGAGTGTGTCTGGCTCAGCAGATCCAGGATACTCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGATGAGTGTGTCTGGCTCAGCAGATCCAGGATACTCAGC  50

seq1  AGATAAGGATGCTGCCAGGGAAGTAGCCCCGGCCGGTATAAAGAGGGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGGATGCTGCCAGGGAAGTAGCCCCGGCCGGTATAAAGAGGGGTG  100

seq1  AGGAAAGTGCTGGGTAGGCACTTATTCATTGACTTCAATTGAATTAAACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGTGCTGGGTAGGCACTTATTCATTGACTTCAATTGAATTAAACG  150

seq1  GACTCAGAGCCAAACACTGATACATAACTGCTTCTGTCCTGCGACCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGAGCCAAACACTGATACATAACTGCTTCTGTCCTGCGACCAGTT  200

seq1  CATCCATTCAAGTGAGAAGAAAGGCTGAACACCAACATTTGACTTCCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATTCAAGTGAGAAGAAAGGCTGAACACCAACATTTGACTTCCAAC  250

seq1  AAAACTAGACAACATGTTTAGAGCATGTCAAATTAAACGTGTGTCAGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAGACAACATGTTTAGAGCATGTCAAATTAAACGTGTGTCAGGTG  300

seq1  CTGCGATAGATCCATAATGTCTGATTTAATCCAGTTTGAACTGTTTATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGATAGATCCATAATGTCTGATTTAATCCAGTTTGAACTGTTTATTG  350

seq1  TCACCCCCTTATCATAAATCAGAAGATTATAGGTTCAGAGAAATTTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCCTTATCATAAATCAGAAGATTATAGGTTCAGAGAAATTTAAGA  400

seq1  ATGCAAAGGCCTAGAATTCAAACGTGTGTCTTTGCACGAAAGAGTCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAGGCCTAGAATTCAAACGTGTGTCTTTGCACGAAAGAGTCCAGA  450

seq1  GTTCTTCTTATGTCATCAAATCTCCTCTAGAATTTTTCTGCACATGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCTTATGTCATCAAATCTCCTCTAGAATTTTTCTGCACATGCTTT  500

seq1  GCACAGACTTTATAGCACAACAACTTGGAATTAAAGTCAACGTAAGGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGACTTTATAGCACAACAACTTGGAATTAAAGTCAACGTAAGGAGT  550

seq1  AAACAAAACAGAAGCAGGGACATGAGCATTTACTAAAAGAGGCATATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAGAAGCAGGGACATGAGCATTTACTAAAAGAGGCATATTTT  600

seq1  TAATCCATTGTGTTAGGTAAATCTATGGATATGAAAACAAATACTTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCATTGTGTTAGGTAAATCTATGGATATGAAAACAAATACTTTTTG  650

seq1  TTTTAAGCAAGTCATATTACTTAGTGAAATTTAGAAGTGTATTGTGGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGCAAGTCATATTACTTAGTGAAATTTAGAAGTGTATTGTGGTAA  700

seq1  TTAACAATTTTATAGAACTTTTAATAGTTTTAGTTAGTATATTTTGTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAATTTTATAGAACTTTTAATAGTTTTAGTTAGTATATTTTGTGAT  750

seq1  GAAAAGTAATTTAAAATGAAAGTTAGTATGTTAAAAACTTATAAGACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTAATTTAAAATGAAAGTTAGTATGTTAAAAACTTATAAGACAGA  800

seq1  GATGAGTTTTAAATTACCTGGTAAATTTGATTTTTAAAAACACAATATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTTTTAAATTACCTGGTAAATTTGATTTTTAAAAACACAATATAT  850

seq1  AAGTAGAATGATACTTACTGCCTGGTGCCCTAGAATTTGCATATTTGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAATGATACTTACTGCCTGGTGCCCTAGAATTTGCATATTTGAGG  900

seq1  ATGAATTAATAATGTTCTAATAAAAAGATGGCCTGAGAGTTATAGAAATT  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATGAATTAATAATGTTCTAAT-AAAAGATGGCCTGAGAGTTATAGAAATT  949

seq1  AACAACAGGAAATTGCTGAGTACCTTCAAACTGAAGTTAAAAATGCATTT  1000
      ||| |||||||||||||||||||||||||||||||||| ||||||||  |
seq2  AAC-ACAGGAAATTGCTGAGTACCTTCAAACTGAAGTT-AAAATGCA--T  995

seq1  TCATACTAAG-CTCTCCAGAGCTGAAATGCCACTTAGATGCAGAGAAGCA  1049
      |||||||||| |||||||||||||||||||||| ||||||||||| ||||
seq2  TCATACTAAGCCTCTCCAGAGCTGAAATGCCAC-TAGATGCAGAG-AGCA  1043

seq1  ACTGTGGG-ATTCT-GGCAGAGGGAAGGAAGCCAACATAAAGAGCAT-CA  1096
      |||||||| ||||| |||||| || ||||||||||| | |||||| | ||
seq2  ACTGTGGGAATTCTGGGCAGA-GGTAGGAAGCCAAC-TTAAGAGCCTCCA  1091

seq1  ACGT-GATGCTTTGGG--ATCCATGCTA  1121
       ||| |||||||| ||  ||||||||||
seq2  CCGTGGATGCTTTTGGATATCCATGCTA  1119