BAC Information

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BAC

Clone NameB6Ng01-073E16
Chromosome7 (Build37)3 (Build37)
Map Location 38,659,888 - 38,660,02983,971,691 - 83,972,774
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043874, Zfp536, LOC100043453
Downstream geneEG627844, C80913, Ccne1, 1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983, EG434171, LOC100043467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073E16.bB6Ng01-073E16.g
ACCDH890466DH890467
length6861,080
definitionDH890466|Mus musculus domesticus DNA, BAC clone: B6Ng01-073E16, 5' end.DH890467|Mus musculus domesticus DNA, BAC clone: B6Ng01-073E16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,659,888 - 38,660,029)(83,971,691 - 83,972,774)
sequence
gaattcctgacttgattcaaataattttaggaagaaagtgtaaggagatg
gcttatttgttttggcagaaagatataataaagtcagaatgaggaagaac
agagtatgcccctcctcatagaatagtaagtaaaaagtgcataataagga
atgcaatgagctttcacaattacaccaggaagaaaaataggcttcagaca
gatttatgatcaaggaaaagcattcattctaggtcaggtccaaggatgaa
gtcacgggtgtgcactctgataaagcaaggccatgtgacactgttgttgc
tttgaacttataatgagcttatagaatgaaacaccgctttgaacttacta
tcaacatccgactgtaactccccttttgtgtaacactttatctatgaggt
aattttacaaagaacctttgtctaagaaagtataaaatggctgagagaaa
aaataaagtgttactgttggggttgtgctccatcctccaaatgcatatag
gtctgtccatctgtctatgtgtatgtacaatatgactgtatgtctttatg
aatgtatgtctatatgtatgaacatgcatacataactaggtatatgtgta
tataggtgtgcatgtgcacttgtgaaattgatgaaacagtcgggtcctgc
cagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattctccttcctgattaaatacctgtatgaaatattgaaaaactttta
tttaaaaatagctgacccagctacattgcttttttcttaaatagctgtca
aagcaagttatttataatgagacctgtgacttgagaaaagactgaggaaa
gtcgtctatatactagcctcctgtagcttgtggttcccaaagcctatgca
atctcatttattatttattaaattactcttctttttctgccatttacaac
tggttactacatacttggggttttttttttataaattacaaaatacaata
tgctataagatattctgaataaaacttaaactatttattttaaaacacta
aatattatcttcaaataagtagctttatttactaaataaataaaaattca
aaaatgggcactatgtctctagcagatgggttgtcattcagtttggatta
ggtttttgttagaccaaatattcagggtttattaccatttttactatatc
aacataacaagaacaagaagactcatacttaggattataggcattatgtg
tgtcaacaagggcgtgaacaaaccatgttcatgggtgaagaatagcaggg
gctgttttatttccctcagagggtgctatagctaaatagtgagtttataa
ccccaaaggctttcactactagaaccaactgaggctgttccaagtgaggg
atgaacagagctcttaaggagatggtctctcatgcctggcatgactgatc
gatcagttactgtggtttactaaatatttgtataattgtgatacacgata
caaatataggttacaggttttggaatgaaaattttaatgacaatgttaaa
ttcattcaatgtatctaatgaggctatagggaacattgtatctttgatgc
ttcagatgatacttaataggctctgaaatgttcttgggatgttattttac
atatccattatgacgctgctaaatggatggaagtactactaacaatcaag
aagtgttgcagtcaggcaggcttttaaagtaaaggtgctcattgtggact
ccaaagaggtcacagctttgaagcacgatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_38659888_38660029
seq2: B6Ng01-073E16.b_559_729 (reverse)

seq1  ACACACACACACACACACACACACATTACATACACCCT-GCA--------  41
      ||||||||||||||||||||||||   ||| |||| || |||        
seq2  ACACACACACACACACACACACAC---ACACACACACTGGCAGGACCCGA  47

seq1  ----CACATACAGTATACA----CACATTCACA--TATAT-----TATGC  76
            |||  | |  |||    ||||| ||||  |||||     ||| |
seq2  CTGTTTCATCAATTTCACAAGTGCACATGCACACCTATATACACATATAC  97

seq1  ACTTG-TAT-TACACAT----ACACATGTAGATACACATGC-TGTGTACA  119
       || | ||| ||  |||    | |||| |||| | |||| | |    |||
seq2  -CTAGTTATGTATGCATGTTCATACATATAGACATACATTCATAAAGACA  146

seq1  CACA--CACTGTGTACATACACATA  142
       |||  ||   ||||||||||||||
seq2  TACAGTCATATTGTACATACACATA  171

seq1: chr3_83971691_83972774
seq2: B6Ng01-073E16.g_68_1147

seq1  GAATTCTCCTTCCTGATTAAATACCTGTATGAAATATTGAAAAACTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTCCTGATTAAATACCTGTATGAAATATTGAAAAACTTTTA  50

seq1  TTTAAAAATAGCTGACCCAGCTACATTGCTTTTTTCTTAAATAGCTGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATAGCTGACCCAGCTACATTGCTTTTTTCTTAAATAGCTGTCA  100

seq1  AAGCAAGTTATTTATAATGAGACCTGTGACTTGAGAAAAGACTGAGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGTTATTTATAATGAGACCTGTGACTTGAGAAAAGACTGAGGAAA  150

seq1  GTCGTCTATATACTAGCCTCCTGTAGCTTGTGGTTCCCAAAGCCTATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTCTATATACTAGCCTCCTGTAGCTTGTGGTTCCCAAAGCCTATGCA  200

seq1  ATCTCATTTATTATTTATTAAATTACTCTTCTTTTTCTGCCATTTACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTTATTATTTATTAAATTACTCTTCTTTTTCTGCCATTTACAAC  250

seq1  TGGTTACTACATACTTGGGGTTTTTTTTTTATAAATTACAAAATACAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACTACATACTTGGGGTTTTTTTTTTATAAATTACAAAATACAATA  300

seq1  TGCTATAAGATATTCTGAATAAAACTTAAACTATTTATTTTAAAACACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAAGATATTCTGAATAAAACTTAAACTATTTATTTTAAAACACTA  350

seq1  AATATTATCTTCAAATAAGTAGCTTTATTTACTAAATAAATAAAAATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATCTTCAAATAAGTAGCTTTATTTACTAAATAAATAAAAATTCA  400

seq1  AAAATGGGCACTATGTCTCTAGCAGATGGGTTGTCATTCAGTTTGGATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGCACTATGTCTCTAGCAGATGGGTTGTCATTCAGTTTGGATTA  450

seq1  GGTTTTTGTTAGACCAAATATTCAGGGTTTATTACCATTTTTACTATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTGTTAGACCAAATATTCAGGGTTTATTACCATTTTTACTATATC  500

seq1  AACATAACAAGAACAAGAAGACTCATACTTAGGATTATAGGCATTATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAACAAGAACAAGAAGACTCATACTTAGGATTATAGGCATTATGTG  550

seq1  TGTCAACAAGGGCGTGAACAAACCATGTTCATGGGTGAAGAATAGCAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACAAGGGCGTGAACAAACCATGTTCATGGGTGAAGAATAGCAGGG  600

seq1  GCTGTTTTATTTCCCTCAGAGGGTGCTATAGCTAAATAGTGAGTTTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTATTTCCCTCAGAGGGTGCTATAGCTAAATAGTGAGTTTATAA  650

seq1  CCCCAAAGGCTTTCACTACTAGAACCAACTGAGGCTGTTCCAAGTGAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGGCTTTCACTACTAGAACCAACTGAGGCTGTTCCAAGTGAGGG  700

seq1  ATGAACAGAGCTCTTAAGGAGATGGTCTCTCATGCCTGGCATGACTGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAGAGCTCTTAAGGAGATGGTCTCTCATGCCTGGCATGACTGATC  750

seq1  GATCAGTTACTGTGGTTTACTAAATATTTGTATAATTGTGATACACGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTTACTGTGGTTTACTAAATATTTGTATAATTGTGATACACGATA  800

seq1  CAAATATAGGTTACAGGTTTTGGAATGAAAATTTTAATGACAATGTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATAGGTTACAGGTTTTGGAATGAAAATTTTAATGACAATGTTAAA  850

seq1  TTCATTCAATGTATCTAATGAGGCTATAGGGAACAATTGTATC-TTGATG  899
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  TTCATTCAATGTATCTAATGAGGCTATAGGGAAC-ATTGTATCTTTGATG  899

seq1  CTTCAGATGATACTTAATA-GCTCTGAAATGTTCTTGGGATGTTATTTTA  948
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTCAGATGATACTTAATAGGCTCTGAAATGTTCTTGGGATGTTATTTTA  949

seq1  CATATCCATTATGACGCTGCTTAAATGTATGGAAGTACTAACTAACAAAT  998
      |||||||||||||||||||| |||||| ||||||||||| |||||| |||
seq2  CATATCCATTATGACGCTGC-TAAATGGATGGAAGTACT-ACTAAC-AAT  996

seq1  CAAGAAGTGTTGCAGTCAGGGCAGCCTTTAGAGTAAAGGTTGCTCATGTG  1048
      ||||||||||||||||||||   || |||| |||||||| ||||||| ||
seq2  CAAGAAGTGTTGCAGTCAGGCAGGCTTTTAAAGTAAAGG-TGCTCAT-TG  1044

seq1  TGGACCTCAGAGAGGTCACAGCTTTG-AGCACCGATC  1084
      |||||  || |||||||||||||||| |||| |||||
seq2  TGGACTCCAAAGAGGTCACAGCTTTGAAGCA-CGATC  1080