BAC Information

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BAC

Clone NameB6Ng01-073F13
Chromosome3 (Build37)16 (Build37)
Map Location 84,257,517 - 84,258,39373,093,407 - 73,093,970
singlet/doubletsingletsinglet
Overlap gene6330505N24Rik
Upstream gene1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
Downstream geneArfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073F13.bB6Ng01-073F13.g
ACCDH890506DH890507
length883569
definitionDH890506|Mus musculus domesticus DNA, BAC clone: B6Ng01-073F13, 5' end.DH890507|Mus musculus domesticus DNA, BAC clone: B6Ng01-073F13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,257,517 - 84,258,393)(73,093,407 - 73,093,970)
sequence
gaattctctgtttgaaccgagtgtagaacgctgggtgtggagacccctgt
agtgaatttgatttgtgattagtttctaaggaactgtacatggccctgct
gtctatgatcgctcgatttggactgtgactctatgcctattttctttcct
ttggaatctggggatggaaaccagggtcttaccatgccgggcaagcagcc
tatcaagagagtttccctacccccacccccagcctctagtcctcattact
tggttaaaaagacaatattcaaagcactgaaccgagaaactgattcctta
tctaattaggaacaccttctggtggagctctattggaccaacctgatcat
tacatgctctgtatggcttggcccctgcacctgtgggaaggaaaccccta
aagggttccttcccactggcccttcccaaggtaccctccaaacaaattaa
aaatccttacacctccttggcttgcatgcctctcattatgttggtttaca
aactggttcacattcaacagcatctcatggcttcatcaacttgcatgccc
atggaggtggctggtatttagaatgggtggtagggttttctcggaaacaa
tgggtgcttcccgctgcctcattcctttgagtttgaatgcacctgactag
aattttctgtgaggatctctgtcctgcgcatgttgattgtatcttaatgg
gctgggggactctagtaaaccctaggaagagaaattgtctcagagtcctg
tcgcaagggattggtcttgatctgatttcctggttgaaactaactggagt
tccccagatgctcccttaaactctagagcagtgaggtttccctcccagaa
tttttcacctggcaagaagaatgacctgctatt
caaataatgcaatgctctctcctgtcccattttaatattgggaggggggg
ttgtagccagcatttttttgctccccttgcttgagctactctggatggga
tggtggtgggtgtgaaggaaatgcctacagaggaaataatatttatattt
atagtatttatctcaacagtttcttgccacaaacccaatactgataagaa
gccaattgattgacaggcctttcctgaataattcattgtataatcattaa
tgactcttcttacaagctttcaaaaaaaaaaaaaaaggaaatgagaacaa
aaggaaagaaggaatgagctttcattgaatgcaattaaatgatatattta
tattcttaaaagttttaaatcaccttttagattatacaatttagaaaacc
aagaaaatttcccctgatttatacatggtggctcccagattgttacaatg
gctgcagcatgccaagaaatcctcacgaatacatcaaagtccagtgaaag
gtattacaagctctggtaagtgcccagcctcttgcagcgagcttgacggc
tgatccactgttaggatcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_84257517_84258393
seq2: B6Ng01-073F13.b_43_912 (reverse)

seq1  AAAAGCA-GACATTCTTCTTACCAGATGAATAAATCCGGGAGGGAAGCCT  49
      || |||| | |||||||||| |||| |||| || || ||||||||| |||
seq2  AATAGCAGGTCATTCTTCTTGCCAGGTGAAAAATTCTGGGAGGGAAACCT  50

seq1  CACTCCCTTAGAGCTTCAGGGAGCCTCAGGGAAACAACACTTAGTTTTCA  99
      |||| |  ||||| || ||||||| || ||| |||  || |||| |||||
seq2  CACTGCTCTAGAGTTTAAGGGAGCATCTGGGGAACTCCAGTTAG-TTTCA  99

seq1  GCTTGAAAATCACGTTGAAAGCAATCCCCTGAGACATGAACTCTGAGACA  149
       |  | ||||||  |  | | ||||||| || |||| | |||||||||||
seq2  ACCAGGAAATCAGATCAAGACCAATCCCTTGCGACA-GGACTCTGAGACA  148

seq1  TGAACTCTTCCTAGGATTTACCAGAACTGCCCCAGACCATTCAGATACCT  199
          ||||||||||| ||||| || | | |||||| ||||| ||||||  
seq2  ATTTCTCTTCCTAGGGTTTACTAG-AGTCCCCCAGCCCATTAAGATACAA  197

seq1  TCAACCTTCCCAGGACAGACGATCCTCACATGAAATTCAACTCATGTGCA  249
      ||||| | | ||||||||| ||||||||||  |||||| | ||| |||||
seq2  TCAACATGCGCAGGACAGA-GATCCTCACAGAAAATTCTAGTCAGGTGCA  246

seq1  TTCAAACTCAATGGAATGAGGTAGCGGCTTAGCACCCATTGTTTCCGAGA  299
      ||||||||||| ||||||||| |||||   ||||||||||||||||||||
seq2  TTCAAACTCAAAGGAATGAGGCAGCGG-GAAGCACCCATTGTTTCCGAGA  295

seq1  AAACCCAATCTACCCTGCCTAAATACCAGCCACCTCCATGGGCATGCAAG  349
      |||||| | | ||||   ||||||||||||||||||||||||||||||||
seq2  AAACCCTA-CCACCCATTCTAAATACCAGCCACCTCCATGGGCATGCAAG  344

seq1  TCGATGAAGGCATGAGATGCTGTTGACTGTTAAACCAGTTTGTAAACCAA  399
      | ||||||| |||||||||||||||| || | ||||||||||||||||||
seq2  TTGATGAAGCCATGAGATGCTGTTGAATG-TGAACCAGTTTGTAAACCAA  393

seq1  CTTTAATGAGAGGCATACAAGCCAAGGAGGTGTCTGGATTCTTCAGCTGT  449
      |  ||||||||||||| ||||||||||||||||  ||||| || |  |||
seq2  C-ATAATGAGAGGCATGCAAGCCAAGGAGGTGTAAGGATTTTTAATTTGT  442

seq1  TTGGAGGCTAACTTGGGAAGGGCAAGTGGGAAGGAACCATTTAGGGGATT  499
      ||||||| || |||||||||||| |||||||||||||| |||||||| ||
seq2  TTGGAGGGTACCTTGGGAAGGGCCAGTGGGAAGGAACCCTTTAGGGGTTT  492

seq1  CCTTCCCACAGGAGCAGGGGCCAAGCCATACAGAGCCTGTAATGCTCAGG  549
      |||||||||||| ||||||||||||||||||||||| ||||||| |||||
seq2  CCTTCCCACAGGTGCAGGGGCCAAGCCATACAGAGCATGTAATGATCAGG  542

seq1  TCTGTCCAAAAGAGCTCCACCAGATGGTGTTCCAAATTAGATAAGGAATC  599
      |  |||||| |||||||||||||| |||||||| ||||||||||||||||
seq2  TTGGTCCAATAGAGCTCCACCAGAAGGTGTTCCTAATTAGATAAGGAATC  592

seq1  AGTTTCTCACTTCAGTGCTTTGAATATTGACTTTTTAACCAAGTACTGAG  649
      ||||||||  ||||||||||||||||||| ||||||||||||||| ||||
seq2  AGTTTCTCGGTTCAGTGCTTTGAATATTGTCTTTTTAACCAAGTAATGAG  642

seq1  GACTAGAGGCTGGGGGTGGGGGTAGGGAAACTCTCTTGATAGGCTGCTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAGGCTGGGGGTGGGGGTAGGGAAACTCTCTTGATAGGCTGCTTG  692

seq1  CCCGGCATGGTAAGACCCTGGTTTCCATCCCCAGATTCCAAAGGAAAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCATGGTAAGACCCTGGTTTCCATCCCCAGATTCCAAAGGAAAGAA  742

seq1  ACTATGGATAGAGTCACAGTCCAAATCCTGCAATAATAGACAGCACGCCC  799
      | || | ||||||||||||||||||||  || || |||||||||| | ||
seq2  AATAGGCATAGAGTCACAGTCCAAATCGAGCGATCATAGACAGCAGGGCC  792

seq1  ATGTACAGTTCCTTAGAAACTAATCACAAATCAAATTCACTCCAGGGGTT  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  ATGTACAGTTCCTTAGAAACTAATCACAAATCAAATTCACTACAGGGGTC  842

seq1  TCCACACCCAGCCTTCTACACTCGGTTC  877
      |||||||||||| |||||||||||||||
seq2  TCCACACCCAGCGTTCTACACTCGGTTC  870

seq1: chr16_73093407_73093970
seq2: B6Ng01-073F13.g_80_643 (reverse)

seq1  CCATCCTAACAGTGGCTCAGCCGTCCAGCTCGCTGCAAGAGGCTGGGCAC  50
      | ||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  CGATCCTAACAGTGGATCAGCCGTCAAGCTCGCTGCAAGAGGCTGGGCAC  50

seq1  TTACCAGAGCTTGTAATACCTTTCACTGGACTTTGCTGTATTCGTGTGGA  100
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  TTACCAGAGCTTGTAATACCTTTCACTGGACTTTGATGTATTCGTGAGGA  100

seq1  TTTCCTGGCATGCTGCAGCCATTGTAACAATCTGGGAGCCACCATGTATA  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGGCATGCTGCAGCCATTGTAACAATCTGGGAGCCACCATGTATA  150

seq1  AATCAGGGGAAATTTTCTTGGTTTTCTAAATTGTATAATCTAAAAGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGGGAAATTTTCTTGGTTTTCTAAATTGTATAATCTAAAAGGTGA  200

seq1  TTTAAAACTTTTAAGAATATAAATATATCATTTAATTGCATTCAATGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACTTTTAAGAATATAAATATATCATTTAATTGCATTCAATGAAA  250

seq1  GCTCATTCCTTCTTTCCTTTTGTTCTCATTTCCTTTTTTTTTTTTTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTCCTTCTTTCCTTTTGTTCTCATTTCCTTTTTTTTTTTTTTTGA  300

seq1  AAGCTTGTAAGAAGAGTCATTAATGATTATACAATGAATTATTCAGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGTAAGAAGAGTCATTAATGATTATACAATGAATTATTCAGGAAA  350

seq1  GGCCTGTCAATCAATTGGCTTCTTATCAGTATTGGGTTTGTGGCAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTCAATCAATTGGCTTCTTATCAGTATTGGGTTTGTGGCAAGAAA  400

seq1  CTGTTGAGATAAATACTATAAATATAAATATTATTTCCTCTGTAGGCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAGATAAATACTATAAATATAAATATTATTTCCTCTGTAGGCATT  450

seq1  TCCTTTTGCTGGTAGATGAATCAATCATAACTATTTCCTACAAGGGGAGC  500
      |||||          |  |  | |||   | ||  ||   ||||||||||
seq2  TCCTTCACACCCACCACCATCCCATCCAGAGTAGCTCAAGCAAGGGGAGC  500

seq1  AAAAAAATGCAGACTACAACCCCCCCTCCCATTATTAAAAGTGGAAAGGA  550
      |||||||||| | |||||||||||||||||| ||||||||  ||| ||||
seq2  AAAAAAATGCTGGCTACAACCCCCCCTCCCAATATTAAAATGGGACAGGA  550

seq1  GAGAGCATTGCATT  564
      ||||||||||||||
seq2  GAGAGCATTGCATT  564