BAC Information

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BAC

Clone NameB6Ng01-073L17
Chromosome3 (Build37)2 (Build37)
Map Location 79,442,336 - 79,442,86656,033,938 - 56,034,975
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik
Downstream geneRxfp1, Tmem144, 1110032E23Rik, EG626797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073L17.bB6Ng01-073L17.g
ACCDH890772DH890773
length1,1101,037
definitionDH890772|Mus musculus domesticus DNA, BAC clone: B6Ng01-073L17, 5' end.DH890773|Mus musculus domesticus DNA, BAC clone: B6Ng01-073L17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,442,336 - 79,442,866)(56,033,938 - 56,034,975)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggctttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgggtcctgccaatccatgagcatgggagatctttccatct
tctgagatcttctttaatttctttcttcagggacttgaagttttatcata
cagatctttcacttccttcgttagagtcacgccgagatatttatattatt
tgtggctattgaggaaggtgttgtttcccttaatttctttctcagtctgt
ttattctttgattaagagaaagccattgacttgttgagtatttatatcca
gctacttcccgaagctgtaatcagtttagggagttctctgttggaatttt
ttaggtcact
gaattctgtggagtaggactttgtttctctctatgatcttttcataggag
actttttctgtcatacatgttagttccaaaagatcactatgtgccaagag
atcagaggatcaagaagggggttcatgttcatgtttcatctggttctgaa
gtgaacttacttaaatggttcctccacaacacgagaaattttacacgaga
agatgagtaagtggagcagatttatgaatcagtacctgagttgctagcca
tttctccacaatttcagccctggtgctgacccaatcatggtgtatattct
cctggaatgtaatccaggaacctgttcccattttcccacaagagtacttg
aaagtctcaccatattgctctaatctatttatgtggcaattggacttact
acctagaaaagtaggttatggtgtgttccattaaagcactcaaaggtggg
gatgctggaagagctaaggactgtacttagctatatagcagacattgatt
ttgggttaaatacaaatctgttcaacgacatttctgagcactgtgtggct
gtagcaacaagcaagcaatcttttgcaagtagaagttctctctctcattg
gctctgcattaagcagacacttactgattggcagcatccatcacaatctt
ctcttcaggccatatcaatcaatctttgttgtcatctgagaagacagagt
tagaagatttaaaaactgtatatatgcagaaggctacactgcacaggact
cccaggatttagttcttgataaccattttgaaaacacagaaacatataaa
tggggtctttctgcagtttttctaccacagaaaaatgtccaacatcctga
gagtagagaccaggttcgtctttcgaacattgggaagaatattttaaaca
gccttagaagttcctgaagtaaagctgaggagatggctccagtagttctg
aatgctactgctcttccagagatcagacaaaacacattgtggctccaacc
atctgttaagtccagtttcaagggaggatctgacacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79442336_79442866
seq2: B6Ng01-073L17.b_635_1159 (reverse)

seq1  AGTGACCCTAAAAATTCCAACAGAGAACTCCTAAACCTGATAAACAGCTT  50
      |||||||  ||||||||||||||||||||||  || |||||  |||||||
seq2  AGTGACCTAAAAAATTCCAACAGAGAACTCCCTAAACTGAT-TACAGCTT  49

seq1  CGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTC  100
      ||| ||||||||||||||||||    |||| ||||||||||||| |||||
seq2  CGG-GAAGTAGCTGGATATAAA---TACTC-AACAAGTCAATGG-CTTTC  93

seq1  TC-TACACAAAGAATAAACAGGCTGAGAAAGAAATT-AGGGAAACAACAC  148
      || ||  |||||||||||||| |||||||||||||| |||||||||||||
seq2  TCTTAATCAAAGAATAAACAGACTGAGAAAGAAATTAAGGGAAACAACAC  143

seq1  CCTTCTCAATAGCCACAAATAATATAAAATATCTCGGCGTGACTCTAACG  198
      | | ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTTCCTCAATAGCCACAAATAATAT-AAATATCTCGGCGTGACTCTAACG  192

seq1  AAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCCCTGAAGAAAGA  248
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAGGAAGTGAAAGATCTGTATGAT-AAAACTTCAAGTCCCTGAAGAAAGA  241

seq1  AATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTG  291

seq1  GCAGGA-CCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAG  347
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACCCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAG  341

seq1  ATTCAATGCAATCCCCATTAAAATTCCAACTCAATTCTTCAACGAATTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATGCAATCCCCATTAAAATTCCAACTCAATTCTTCAACGAATTAG  391

seq1  AAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCGAGGATAGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCGAGGATAGCA  441

seq1  AAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGA  491

seq1  CCTAAAGCTTTACTACAGAGCAATTGTGATAAAA  531
      ||||||||||||||||||||||||||||||||||
seq2  CCTAAAGCTTTACTACAGAGCAATTGTGATAAAA  525

seq1: chr2_56033938_56034975
seq2: B6Ng01-073L17.g_69_1105

seq1  GAATTCTGTGGAGTAGGACTTTGTTTCTCTCTATGATCTTTTCATAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGAGTAGGACTTTGTTTCTCTCTATGATCTTTTCATAGGAG  50

seq1  ACTTTTTCTGTCATACATGTTAGTTCCAAAAGATCACTATGTGCCAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTCTGTCATACATGTTAGTTCCAAAAGATCACTATGTGCCAAGAG  100

seq1  ATCAGAGGATCAAGAAGGGGGTTCATGTTCATGTTTCATCTGGTTCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGGATCAAGAAGGGGGTTCATGTTCATGTTTCATCTGGTTCTGAA  150

seq1  GTGAACTTACTTAAATGGTTCCTCCACAACACGAGAAATTTTACACGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTTACTTAAATGGTTCCTCCACAACACGAGAAATTTTACACGAGA  200

seq1  AGATGAGTAAGTGGAGCAGATTTATGAATCAGTACCTGAGTTGCTAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGTAAGTGGAGCAGATTTATGAATCAGTACCTGAGTTGCTAGCCA  250

seq1  TTTCTCCACAATTTCAGCCCTGGTGCTGACCCAATCATGGTGTATATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCACAATTTCAGCCCTGGTGCTGACCCAATCATGGTGTATATTCT  300

seq1  CCTGGAATGTAATCCAGGAACCTGTTCCCATTTTCCCACAAGAGTACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAATGTAATCCAGGAACCTGTTCCCATTTTCCCACAAGAGTACTTG  350

seq1  AAAGTCTCACCATATTGCTCTAATCTATTTATGTGGCAATTGGACTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTCACCATATTGCTCTAATCTATTTATGTGGCAATTGGACTTACT  400

seq1  ACCTAGAAAAGTAGGTTATGGTGTGTTCCATTAAAGCACTCAAAGGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAAAAGTAGGTTATGGTGTGTTCCATTAAAGCACTCAAAGGTGGG  450

seq1  GATGCTGGAAGAGCTAAGGACTGTACTTAGCTATATAGCAGACATTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGAAGAGCTAAGGACTGTACTTAGCTATATAGCAGACATTGATT  500

seq1  TTGGGTTAAATACAAATCTGTTCAACGACATTTCTGAGCACTGTGTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTAAATACAAATCTGTTCAACGACATTTCTGAGCACTGTGTGGCT  550

seq1  GTAGCAACAAGCAAGCAATCTTTTGCAAGTAGAAGTTCTCTCTCTCATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAACAAGCAAGCAATCTTTTGCAAGTAGAAGTTCTCTCTCTCATTG  600

seq1  GCTCTGCATTAAGCAGACACTTACTGATTGGCAGCATCCATCACAATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCATTAAGCAGACACTTACTGATTGGCAGCATCCATCACAATCTT  650

seq1  CTCTTCAGGCCATATCAATCAATCTTTGTTGTCATCTGAGAAGACAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGGCCATATCAATCAATCTTTGTTGTCATCTGAGAAGACAGAGT  700

seq1  TAGAAGATTTAAAAACTGTATATATGCAGAAGGCTACACTGCACAGGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGATTTAAAAACTGTATATATGCAGAAGGCTACACTGCACAGGACT  750

seq1  CCCAGGATTTTAGTTCTTGATAACCA-TTTGAAAACACAGAAACATATAA  799
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  CCCAGGA-TTTAGTTCTTGATAACCATTTTGAAAACACAGAAACATATAA  799

seq1  ATGGGGTCTTTCTGCAGTTTTTCTACCACAGAAAAATGTCCAACAATCCT  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATGGGGTCTTTCTGCAGTTTTTCTACCACAGAAAAATGTCCAAC-ATCCT  848

seq1  GAGAGTAGAGACCAGGTTCGTCTTTTCGAACAATTGGGAAGAATA-TTTA  898
      |||||||||||||||||||||| |||||||| ||||||||||||| ||||
seq2  GAGAGTAGAGACCAGGTTCGTC-TTTCGAAC-ATTGGGAAGAATATTTTA  896

seq1  AACAGCCTTAGAAGTTCCTGAAGTAAAGCTGAAGAGATGGCT-CAGTAGT  947
      |||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  AACAGCCTTAGAAGTTCCTGAAGTAAAGCTGAGGAGATGGCTCCAGTAGT  946

seq1  TCTGAATGCTTACTGCTCTTCCAGAAGATCAGACAAAACACA-TGTGGCT  996
      ||||||||| |||||||||||||| ||||||||||||||||| |||||||
seq2  TCTGAATGC-TACTGCTCTTCCAG-AGATCAGACAAAACACATTGTGGCT  994

seq1  CACAACCATCTGTT-AGTCCAG-TTCCAGGGAGGATCTGACACC  1038
      | |||||||||||| ||||||| ||| |||||||||||||||||
seq2  C-CAACCATCTGTTAAGTCCAGTTTCAAGGGAGGATCTGACACC  1037