BAC Information

Click to search

BAC

Clone NameB6Ng01-074A11
Chromosome3 (Build37)
Map Location 153,801,444 - 153,956,892
singlet/doubletdoublet
Overlap geneSlc44a5
Upstream geneLOC100040750, St6galnac3, EG545578, Asb17, Msh4, Rabggtb, Acadm, LOC100040980
Downstream geneLhx8, LOC100040810, LOC100040829, Tyw3, Cryz, BC007180, Tnni3k, Fpgt, Lrrc44, EG383956
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074A11.bB6Ng01-074A11.g
ACCDH890991DH890992
length3431,057
definitionDH890991|Mus musculus domesticus DNA, BAC clone: B6Ng01-074A11, 5' end.DH890992|Mus musculus domesticus DNA, BAC clone: B6Ng01-074A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,956,550 - 153,956,892)(153,801,444 - 153,802,503)
sequence
tgagtcactaagtgactagaggcacagcctaacagttcgttgctctttgt
ttgcacagttatactcggtacagaccacttcttccaaagtgggggaggag
ggctaggtggtggtggagtatccaactatcgtggtggggcctaggtggtg
ttatcagagtctatcctcaccagacggagccagtaaggacgaagcaaagt
agctcacaggtgtgcctgtgcattaagagaagagaagccaagcaggtgtg
aggcagctcctgatgcactctacacttgagctgactgggcagacagcctc
aggttccagacgatgtctatactgtaaagatgggggggggggg
gaattcaggaatgcatctctcctgtacactcctactgccctgagatgcag
agatggaaacttgctgtgtcttctgacatttacttggaacccaaattctt
aactagaagtttgtgtatggagtcacaaagttaaaatttattctgtcagt
aatctggaaataataaatgtgttcactatgggaataaatatgttaaataa
taattaaattaattaatttcacttattttgatgtagtaataaactaaaac
tttacattgtacccgagaaacacacacaattattatttatctgttaaaat
cattacaattctaaaatatgattatatatgcatttctacctctgttatca
aagttcctttgttatcttttgtgcactttatctatctagagtctaaatgt
tgttctcacacttaaataccatttacaccttcaaattttcttttcttaaa
cttcttaatttggtcccatatgattcttcaaggcaggggatcaaaacaga
ggttattatgtaaaattccagacattgagattggagataaaaagatgaga
gatgataatgtgaaaagaagtagatgccaacattgtcaccagacgcttac
cattattctaacttaaaatggaccatgagacaaaacatttcacttttcaa
taaaggctggagttctgccttcattcataaatcagcctcgcaattaggag
aaagcaattaggtctgtaataaaatcctcctctttctgacaaggtttttg
agataaatgaaccaaggacgaagaagcatcgtatcttggttataaaatcg
tctagggatagagggacccttgagtgaggagtctccttggacagtcagga
gtccaagggcaaggccagcagaggtgttgccccgaagctctgcctctttc
tcgcaggagccacccaccatgagcacatcctcagctcctaggaacagagc
tgtggctggggaaccatcctgaaagcatgaagcctagagtcaagggtgct
tgtgtggcatggcactgactgacattcgtctttccttttaattgttcctc
cgatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_153956550_153956892
seq2: B6Ng01-074A11.b_51_393 (reverse)

seq1  CCCCCCCCCCCCATCTTTACAGTATAGACATCGTCTGGAACCTGAGGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCATCTTTACAGTATAGACATCGTCTGGAACCTGAGGCTG  50

seq1  TCTGCCCAGTCAGCTCAAGTGTAGAGTGCATCAGGAGCTGCCTCACACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCAGTCAGCTCAAGTGTAGAGTGCATCAGGAGCTGCCTCACACCT  100

seq1  GCTTGGCTTCTCTTCTCTTAATGCACAGGCACACCTGTGAGCTACTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCTTCTCTTCTCTTAATGCACAGGCACACCTGTGAGCTACTTTGC  150

seq1  TTCGTCCTTACTGGCTCCGTCTGGTGAGGATAGACTCTGATAACACCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTCCTTACTGGCTCCGTCTGGTGAGGATAGACTCTGATAACACCACC  200

seq1  TAGGCCCCACCACGATAGTTGGATACTCCACCACCACCTAGCCCTCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCCCACCACGATAGTTGGATACTCCACCACCACCTAGCCCTCCTCC  250

seq1  CCCACTTTGGAAGAAGTGGTCTGTACCGAGTATAACTGTGCAAACAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTTGGAAGAAGTGGTCTGTACCGAGTATAACTGTGCAAACAAAGA  300

seq1  GCAACGAACTGTTAGGCTGTGCCTCTAGTCACTTAGTGACTCA  343
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACGAACTGTTAGGCTGTGCCTCTAGTCACTTAGTGACTCA  343

seq1: chr3_153801444_153802503
seq2: B6Ng01-074A11.g_69_1125

seq1  GAATTCAGGAATGCATCTCTCCTGTACACTCCTACTGCCCTGAGATGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAATGCATCTCTCCTGTACACTCCTACTGCCCTGAGATGCAG  50

seq1  AGATGGAAACTTGCTGTGTCTTCTGACATTTACTTGGAACCCAAATTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAAACTTGCTGTGTCTTCTGACATTTACTTGGAACCCAAATTCTT  100

seq1  AACTAGAAGTTTGTGTATGGAGTCACAAAGTTAAAATTTATTCTGTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAAGTTTGTGTATGGAGTCACAAAGTTAAAATTTATTCTGTCAGT  150

seq1  AATCTGGAAATAATAAATGTGTTCACTATGGGAATAAATATGTTAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGAAATAATAAATGTGTTCACTATGGGAATAAATATGTTAAATAA  200

seq1  TAATTAAATTAATTAATTTCACTTATTTTGATGTAGTAATAAACTAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAATTAATTAATTTCACTTATTTTGATGTAGTAATAAACTAAAAC  250

seq1  TTTACATTGTACCCGAGAAACACACACAATTATTATTTATCTGTTAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTGTACCCGAGAAACACACACAATTATTATTTATCTGTTAAAAT  300

seq1  CATTACAATTCTAAAATATGATTATATATGCATTTCTACCTCTGTTATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAATTCTAAAATATGATTATATATGCATTTCTACCTCTGTTATCA  350

seq1  AAGTTCCTTTGTTATCTTTTGTGCACTTTATCTATCTAGAGTCTAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCTTTGTTATCTTTTGTGCACTTTATCTATCTAGAGTCTAAATGT  400

seq1  TGTTCTCACACTTAAATACCATTTACACCTTCAAATTTTCTTTTCTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCACACTTAAATACCATTTACACCTTCAAATTTTCTTTTCTTAAA  450

seq1  CTTCTTAATTTGGTCCCATATGATTCTTCAAGGCAGGGGATCAAAACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAATTTGGTCCCATATGATTCTTCAAGGCAGGGGATCAAAACAGA  500

seq1  GGTTATTATGTAAAATTCCAGACATTGAGATTGGAGATAAAAAGATGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTATGTAAAATTCCAGACATTGAGATTGGAGATAAAAAGATGAGA  550

seq1  GATGATAATGTGAAAAGAAGTAGATGCCAACATTGTCACCAGACGCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATAATGTGAAAAGAAGTAGATGCCAACATTGTCACCAGACGCTTAC  600

seq1  CATTATTCTAACTTAAAATGGACCATGAGACAAAACATTTCACTTTTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCTAACTTAAAATGGACCATGAGACAAAACATTTCACTTTTCAA  650

seq1  TAAAGGCTGGAGTTCTGCCTTCATTCATAAATCAGCCTCGCAATTAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCTGGAGTTCTGCCTTCATTCATAAATCAGCCTCGCAATTAGGAG  700

seq1  AAAGCAATTAGGTCTGTAATAAAATCCTCCTCTTTCTGACAAGGTTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATTAGGTCTGTAATAAAATCCTCCTCTTTCTGACAAGGTTTTTG  750

seq1  AGATAAATGAACCAAGGACGAAGAAGCATCGTATCTTGGTTATAAAATCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAATGAACCAAGGACGAAGAAGCATCGTATCTTGGTTATAAAATCG  800

seq1  TCTAGGGATAGAGGGACCCTTGAGTGAGGAGTCTCCTTGGACAGTCAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGATAGAGGGACCCTTGAGTGAGGAGTCTCCTTGGACAGTCAGGA  850

seq1  GTCCAAGGGCAAGGCCAGCAGAGGTGTTGCCCCGAAGCTCTGCCTCTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGGGCAAGGCCAGCAGAGGTGTTGCCCCGAAGCTCTGCCTCTTTC  900

seq1  TCGCAGGAGCCACCCACCATGAGCACATCCTCAGCTCCTAGGAACAGAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAGGAGCCACCCACCATGAGCACATCCTCAGCTCCTAGGAACAGAGC  950

seq1  TGTGGCTGGGGAACCATCCTGAAAGCATGAAGCCTAGAAGTCAGGGTGTG  1000
      ||||||||||||||||||||||||||||||||||||| ||||| || |||
seq2  TGTGGCTGGGGAACCATCCTGAAAGCATGAAGCCTAG-AGTCAAGG-GTG  998

seq1  CCTGTGTGGCATGGCACTGACTGACATTCGTCTTTTCTTTTTAATTGTTC  1050
      | |||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  CTTGTGTGGCATGGCACTGACTGACATTCGTC-TTTCCTTTTAATTGTTC  1047

seq1  CTTCGATATT  1060
      || |||||||
seq2  CTCCGATATT  1057