BAC Information

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BAC

Clone NameB6Ng01-074B03
Chromosome3 (Build37)10 (Build37)
Map Location 41,059,203 - 41,059,73748,560,709 - 48,561,837
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074B03.bB6Ng01-074B03.g
ACCDH891021DH891022
length1,0031,119
definitionDH891021|Mus musculus domesticus DNA, BAC clone: B6Ng01-074B03, 5' end.DH891022|Mus musculus domesticus DNA, BAC clone: B6Ng01-074B03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,203 - 41,059,737)(48,560,709 - 48,561,837)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttatggagtctaccttcttgagttctttatatatattcgatattagtccc
ctatctgatttgggataggtaaatatcctttcccaatctgttggtggcct
ttttgtcttattgacagtgtcttttgctttggagaagctttgcaatttta
tgaggtcccatttatcgattctcaatcttacagcacatgccattgctgtt
ctattcaggaatttttctcctgtacccatatcttcaaggctttttcctac
tttctcctctataagtttcagtgtctctagttttatgtggagttccttaa
tcgacttagatttgaccttagtacaaggagataggaatggatcaattcgc
atttttctacatgataaccaccagttgtgccagcaccatttgttgaaaat
gctgtctttttttctactggatggttttagctcccttgtcaaagatcaag
tgaccataggtgtgtgggttcatctctgggtcttcaattctgttccattg
gtctacttgtctgtctctataccagtaccatgcagtttttatcacaattg
ctctgtagtacagcttaatgtcagacatggtgattccaccagaggttctt
ttatccttgagaagagttttgctatcctaggttttttgttattccagatg
aatctgccgattgccctttctaattcgttgaagaattgagttgaaatgtt
gatggggattgcattgaatctgtagattgcttttggcaagatagctattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagttcttatcata
cagatctttcacttccttagttagagtcacaccaaggtattttatattat
ttgtgactattgagaagggtgtgtttccctaatttctttctcagcctgtt
att
gaattctctagagttacagaacttatgaaatgtctctttatattgaggga
atttattgtgatggcttatcgtttgtagtctaactaccccaacaatggtc
aactgcaaatgggacgtccaagaatctagtagttgcacagtcccatgaga
ctagttgtttcagctggtcttctgtagaagtatattccaacagatatgct
ggaaagtaaaagcaaacagtgaagaagagtgagtcttccttctaccaatg
tctttatgtatgtctccagcagaaagggtggtccagaataaagatgtgta
ctattattactgaacctggaacttgttttgtcttaagatgacattaccca
tatttttttttctgtttactataagacaatgtacagttgccatttgtaca
atgaatacccatggataaatattaatagtatatcttaaaatccttgtaaa
ataagggttacaggagaagtaatgagacaattttaattataccactgggg
aaagttatgctctagtagctaaatagtagattgtatttcaagtgaagaaa
caatgaaattgtcagccatgaagtgcaagtggagaaaggagacatatgtc
ccatgcactcaaccttgactgtagtcacaattttcaggcactattggatt
ctgaatcaaataactataacaggtacagaaaccagtaaaacacagcttca
atgagggaaaggagactcctgcttctttcctaaggcacatgagtttccaa
acagtatcatcattacactatgtgagcacaatctttttcatttgtcttta
taagttcatatttgatgcaaatcgtttggattactatttgtaatgtctgc
tctctcaagaggggtgcccacactcaactgaggtctggtgaaatcttaat
tgttcagttaagtctagagcctgtggttgatcagtagaagaaaaaggcag
agctgatgttttagagagggaaaagaggagaagagatagttgagatgaga
cagaggttggagaggatgggggagagaagttgaaacagaaacatgtggac
cttaggagccatagtactaggatttcataggatgggcaataagagtactt
gggtcctttatccattctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059203_41059737
seq2: B6Ng01-074B03.b_46_582 (reverse)

seq1  ATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGATCTTCGA  50
      ||||||||| |||| | ||| |||||||||||||||||||||||||| ||
seq2  ATTGAAGACCCAGAGATGAACCCACACACCTATGGTCACTTGATCTTTGA  50

seq1  CAAGGGAGCTAAAACCATCCAGT-GGAAAAAAGACAGCATTTTCAACAAA  99
      ||||||||||||||||||||||| | ||||||||||||||||||||||||
seq2  CAAGGGAGCTAAAACCATCCAGTAGAAAAAAAGACAGCATTTTCAACAAA  100

seq1  TGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCC  149
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  TGGTGCTGGCACAACTGGTGGTTATCATGTAGAAAAATGCGAATTGATCC  150

seq1  ACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCC  199
      | ||||||||||||||||||||||||||||||||| ||| ||||||| ||
seq2  ATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTCGATTAAGGAACTCC  200

seq1  ACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGC  249
      ||||||||| |||||||||||||||||||||||||||||| || ||||||
seq2  ACATAAAACTAGAGACACTGAAACTTATAGAGGAGAAAGTAGGAAAAAGC  250

seq1  CTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGC  299
      |||||||||||||  ||||| |||||||||||| ||||||||||||||||
seq2  CTTGAAGATATGGGTACAGGAGAAAAATTCCTGAATAGAACAGCAATGGC  300

seq1  TTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAA  349
       |||||||||||||||||||| || |||||||||||||| ||| ||||||
seq2  ATGTGCTGTAAGATTGAGAATCGATAAATGGGACCTCATAAAATTGCAAA  350

seq1  GCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CACCAACA  398
      |||||| ||| ||||||||||| |||||||||||||||||| ||||||||
seq2  GCTTCTCCAAAGCAAAAGACACTGTCAATAAGACAAAAAGGCCACCAACA  400

seq1  GATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATC  448
      |||||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  GATTGGGAAAGGATATTTACCTATCCCAAATCAGATAGGGGACTAATATC  450

seq1  CAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACC  498
       ||||||||| |||||||||||||||| || |||| ||||||||||||||
seq2  GAATATATATAAAGAACTCAAGAAGGTAGACTCCATAAAATCAAATAACC  500

seq1  CCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  535
      |||||||||||||||||||||| || |||||||||||
seq2  CCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATT  537

seq1: chr10_48560709_48561837
seq2: B6Ng01-074B03.g_68_1186

seq1  GAATTCTCTAGAGTTACAGAACTTATGAAATGTCTCTTTATATTGAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGAGTTACAGAACTTATGAAATGTCTCTTTATATTGAGGGA  50

seq1  ATTTATTGTGATGGCTTATCGTTTGTAGTCTAACTACCCCAACAATGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTGTGATGGCTTATCGTTTGTAGTCTAACTACCCCAACAATGGTC  100

seq1  AACTGCAAATGGGACGTCCAAGAATCTAGTAGTTGCACAGTCCCATGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAAATGGGACGTCCAAGAATCTAGTAGTTGCACAGTCCCATGAGA  150

seq1  CTAGTTGTTTCAGCTGGTCTTCTGTAGAAGTATATTCCAACAGATATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGTTTCAGCTGGTCTTCTGTAGAAGTATATTCCAACAGATATGCT  200

seq1  GGAAAGTAAAAGCAAACAGTGAAGAAGAGTGAGTCTTCCTTCTACCAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTAAAAGCAAACAGTGAAGAAGAGTGAGTCTTCCTTCTACCAATG  250

seq1  TCTTTATGTATGTCTCCAGCAGAAAGGGTGGTCCAGAATAAAGATGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGTATGTCTCCAGCAGAAAGGGTGGTCCAGAATAAAGATGTGTA  300

seq1  CTATTATTACTGAACCTGGAACTTGTTTTGTCTTAAGATGACATTACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATTACTGAACCTGGAACTTGTTTTGTCTTAAGATGACATTACCCA  350

seq1  TATTTTTTTTTCTGTTTACTATAAGACAATGTACAGTTGCCATTTGTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTTTCTGTTTACTATAAGACAATGTACAGTTGCCATTTGTACA  400

seq1  ATGAATACCCATGGATAAATATTAATAGTATATCTTAAAATCCTTGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATACCCATGGATAAATATTAATAGTATATCTTAAAATCCTTGTAAA  450

seq1  ATAAGGGTTACAGGAGAAGTAATGAGACAATTTTAATTATACCACTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGTTACAGGAGAAGTAATGAGACAATTTTAATTATACCACTGGGG  500

seq1  AAAGTTATGCTCTAGTAGCTAAATAGTAGATTGTATTTCAAGTGAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATGCTCTAGTAGCTAAATAGTAGATTGTATTTCAAGTGAAGAAA  550

seq1  CAATGAAATTGTCAGCCATGAAGTGCAAGTGGAGAAAGGAGACATATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAATTGTCAGCCATGAAGTGCAAGTGGAGAAAGGAGACATATGTC  600

seq1  CCATGCACTCAACCTTGACTGTAGTCACAATTTTCAGGCACTATTGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCACTCAACCTTGACTGTAGTCACAATTTTCAGGCACTATTGGATT  650

seq1  CTGAATCAAATAACTATAACAGGTACAGAAACCAGTAAAACACAGCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCAAATAACTATAACAGGTACAGAAACCAGTAAAACACAGCTTCA  700

seq1  ATGAGGGAAAGGAGACTCCTGCTTCTTTCCTAAGGCACATGAGTTTCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGAAAGGAGACTCCTGCTTCTTTCCTAAGGCACATGAGTTTCCAA  750

seq1  ACAGTATCATCATTACACTATGTGAGCACAATCTTTTTCATTTGTCTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATCATCATTACACTATGTGAGCACAATCTTTTTCATTTGTCTTTA  800

seq1  TAAGTTCATATTTGATGCAAATCGTTTGGATTACTATTTGTAATGTCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCATATTTGATGCAAATCGTTTGGATTACTATTTGTAATGTCTGC  850

seq1  TCTCTCAAGAGGGGTGCCCACACTCAACTGAGGTCTGGTGAAATCTTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAAGAGGGGTGCCCACACTCAACTGAGGTCTGGTGAAATCTTAAT  900

seq1  TGTTCAGTTAAGTCTAGAGCCTGTGGTTGATCAGTAGAAGAAAAAGGCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGTTAAGTCTAGAGCCTGTGGTTGATCAGTAGAAGAAAAAGGCAG  950

seq1  AGCTGAATGTTTTAGAGAGGGAAAAGAGGAAGAAGAGATAAGTTGAGATG  1000
      ||||| ||||||||||||||||||||||| ||||||||| ||||||||||
seq2  AGCTG-ATGTTTTAGAGAGGGAAAAGAGG-AGAAGAGAT-AGTTGAGATG  997

seq1  AGACAGAGGTTGGAAGAAGATGGGGGAAGAAGAAGATGAAACAGAAACAT  1050
      ||||||||||||| ||| |||||||||   ||||| ||||||||||||||
seq2  AGACAGAGGTTGG-AGAGGATGGGGGA--GAGAAGTTGAAACAGAAACAT  1044

seq1  GTGAACCCTAGGAGCCATAAGTAACTAAGGATTTCATA-GATGGGCAAT-  1098
      ||| ||| |||||||||| ||| ||| ||||||||||| |||||||||| 
seq2  GTGGACCTTAGGAGCCAT-AGT-ACT-AGGATTTCATAGGATGGGCAATA  1091

seq1  AGAGTAACATAGGGTACATTTATCCAATCTG  1129
      ||||||   | |||| | |||||||| ||||
seq2  AGAGTA--CTTGGGT-CCTTTATCCATTCTG  1119