BAC Information

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BAC

Clone NameB6Ng01-074C05
Chromosome3 (Build37)
Map Location 80,654,654 - 80,782,119
singlet/doubletdoublet
Overlap geneGlrb, EG626841
Upstream gene1110032E23Rik, EG626797, Gria2
Downstream genePdgfc, LOC229443, LOC100041901, Ctso, Tdo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074C05.bB6Ng01-074C05.g
ACCDH891070DH891071
length1,1831,147
definitionDH891070|Mus musculus domesticus DNA, BAC clone: B6Ng01-074C05, 5' end.DH891071|Mus musculus domesticus DNA, BAC clone: B6Ng01-074C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,780,933 - 80,782,119)(80,654,654 - 80,655,815)
sequence
gaattccaaactcttcaccagtgatgacgggaggcaaggctggagggcta
gaagtgggaaagtttcactttgtgtctcgttcatactggacacaagcatt
tttccaagtgaaagggaaggctgagtatttctttaccatgctatagtcaa
acacagttcagtgtagctgtgcagttattattcaacatggacatttgtcc
agagcagtaataaattcatacctgatacattgggtatcacatgtaaaaag
attctgctacttgtctctgctattctaatcatatgtcacatgtatcttgt
gtagtaccagaattaactgtcatttctccatgccatgtcctccatggatg
tgtcctgacactgggaaggtgaacccacaattttagtagaggcattcata
aaggacaaagaaatagataagctcctttttatttttttcaaaagagtgag
ggtaataactaggacattaaaacaaattatcctaaaagcaccagagagac
agaggcatcctagtagataatgcttttttccatacctctattgccttcag
ttatccaaatcataataaggtgtgagccgataacagcttagcccgtcata
aatcattattgttcaacaaacactatatttgtttgtcttctgccagtgag
agaaatcatctccctgcctaaacagtgtcaggatgcatctttgctctgtg
tgtagcagtaacaagcagacaagacaacaagccatgttatgaaaagagga
aaaatgcatctaactgcatttgattcttgaattcaaagtagttggtattt
ggcgttcattgtcatttgctagatatgtgaagctagtacagaatgagcaa
gtccagaaaagagccattgttcccaagaaatatggagtcttggaaatgtg
taggatcataaaggaaggatttttgtatctactttatcagaaatttgatg
agtgagagtttcttgggccataagtgttgatacagtgatataactttaga
gctaaaccaaatcaacacagtctaagcatgcatctccttagagtactggg
gatctcagtattttaatttttttcttcagttggataaaaagaactgaagg
aaaagtgagtatgccctggttccctgggaattgcactgcaatatggacct
atgtctgaagaaacttactctaaaaagaatttg
gaattccttgacctgttttatgctttcggagagtgcttcccaaaacctct
gctggactcagttctgtttcatctattagaaatacatgtcagtcccacca
cttcattcacatagtgtctcttttctggcactgaagaggatgggcaaccc
acgtccatagttcattccactcttacctgcaaagtgctgatatgaacagg
ggtccccgtgccgtttacagtattcttcttagctgcgtttccacctttcc
catctgcttgctcagccttagctattcgggccttctcggcttcaaccctt
ttgggattgttcagcatcacctggaccacagcgtactccacgagggaggc
aaacccgaagagcaggcaggcaatgagccacacatccagcgccttcacat
aagacactttaggaagctcggctgcgagggtggtgcactctgaggccaaa
ctgagcacggagaagatgcctagcaacaggaaaatcagctgggtttagcc
ctggaaaatgctttacaactattgctcattcactattgagcaagcaaacc
ttaagtgtctttaaggatgaaagactggaagaaatatattgtactatgta
aagtagtaactgtggttagtaaatatttgtaaatatacatcatttaaaaa
ttagatggttttaaaccaaggtttggaagcacagcgtggatttgatttga
ggattaatcatgaaaccttgagagtgtgtctgagagaactgacgagctct
gtgatttattcctttttttctgagttcttggctttttgtagagttttatt
tgtaggaggaattttcacccacaaacaagaatagagcacataaaattttt
gataaggttttttgtttgttgggtggttgtttcatttacaatataatgcc
tagcagagaagataaagtatagagcatccctgttcatttcagaaagaaaa
tctcactttttagataaggaatacaatcctgctatgggaaatactaactt
caatggaaaccagcattatatataaacacgtgtatgatcatacagttata
ggttatgtaaactaggacatttaagccatcataaacttcagaagaggaat
tgttcattacaggcttttctcctcctcgagtcatcgggcttccttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_80780933_80782119
seq2: B6Ng01-074C05.b_47_1229 (reverse)

seq1  CAAATTCTTTTT-GAGTTAGGTTTCTTCAGAC-TAAGTCACTAATGCAGT  48
      |||||||||||| ||| || |||||||||||| || |||  || ||||||
seq2  CAAATTCTTTTTAGAG-TAAGTTTCTTCAGACATAGGTCCATATTGCAGT  49

seq1  GGCAATTCCCAGGGACCCAGGGCAATACTCACTTTTCC-TCAG-TCTTTT  96
       |||||||||||||| ||||||| |||||||||||||| |||| ||||||
seq2  -GCAATTCCCAGGGAACCAGGGC-ATACTCACTTTTCCTTCAGTTCTTTT  97

seq1  TATCCAACTGAAAGAAAAAAAATTAAAATACTGAGATTCACAGTACTCTA  146
      ||||||||||||   |||||||||||||||||||||| | ||||||||||
seq2  TATCCAACTGAA--GAAAAAAATTAAAATACTGAGATCCCCAGTACTCTA  145

seq1  AGGAGATGCATGCTTAGACTGTGTTGATTTGGTTTAGCTCTAAAGTTATA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGCATGCTTAGACTGTGTTGATTTGGTTTAGCTCTAAAGTTATA  195

seq1  TCACTGTTATCAACACTTATGGCCCAAGAAACTTCTCACTCATCAAATTT  246
      |||||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  TCACTG-TATCAACACTTATGGCCCAAGAAAC-TCTCACTCATCAAATTT  243

seq1  CTGATAAAGTAGATACAAAAATCCTTCCTTTATGATCCTACACATTTTCC  296
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGATAAAGTAGATACAAAAATCCTTCCTTTATGATCCTACACA-TTTCC  292

seq1  AAGACTCCATATTTCTTGGGAACAATGGCTCTTTTCTGGACTTGCTCATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCCATATTTCTTGGGAACAATGGCTCTTTTCTGGACTTGCTCATT  342

seq1  CTGTACTAGCTTCACATATCTAGCAAATGACAATGAACGCCAAATACCAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTAGCTTCACATATCTAGCAAATGACAATGAACGCCAAATACCAA  392

seq1  CTACTTTGAATTCAAGAATCAAATGCAGTTAGATGCATTTTTCCTCTTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTGAATTCAAGAATCAAATGCAGTTAGATGCATTTTTCCTCTTTT  442

seq1  CATAACATGGCTTGTTGTCTTGTCTGCTTGTTACTGCTACACACAGAGCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATGGCTTGTTGTCTTGTCTGCTTGTTACTGCTACACACAGAGCA  492

seq1  AAGATGCATCCTGACACTGTTTAGGCAGGGAGATGATTTCTCTCACTGGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCATCCTGACACTGTTTAGGCAGGGAGATGATTTCTCTCACTGGC  542

seq1  AGAAGACAAACAAATATAGTGTTTGTTGAACAATAATGATTTATGACGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAAACAAATATAGTGTTTGTTGAACAATAATGATTTATGACGGG  592

seq1  CTAAGCTGTTATCGGCTCACACCTTATTATGATTTGGATAACTGAAGGCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTGTTATCGGCTCACACCTTATTATGATTTGGATAACTGAAGGCA  642

seq1  ATAGAGGTATGGAAAAAAGCATTATCTACTAGGATGCCTCTGTCTCTCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGTATGGAAAAAAGCATTATCTACTAGGATGCCTCTGTCTCTCTG  692

seq1  GTGCTTTTAGGATAATTTGTTTTAATGTCCTAGTTATTACCCTCACTCTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTTAGGATAATTTGTTTTAATGTCCTAGTTATTACCCTCACTCTT  742

seq1  TTGAAAAAAATAAAAAGGAGCTTATCTATTTCTTTGTCCTTTATGAATGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAAAATAAAAAGGAGCTTATCTATTTCTTTGTCCTTTATGAATGC  792

seq1  CTCTACTAAAATTGTGGGTTCACCTTCCCAGTGTCAGGACACATCCATGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTAAAATTGTGGGTTCACCTTCCCAGTGTCAGGACACATCCATGG  842

seq1  AGGACATGGCATGGAGAAATGACAGTTAATTCTGGTACTACACAAGATAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGGCATGGAGAAATGACAGTTAATTCTGGTACTACACAAGATAC  892

seq1  ATGTGACATATGATTAGAATAGCAGAGACAAGTAGCAGAATCTTTTTACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACATATGATTAGAATAGCAGAGACAAGTAGCAGAATCTTTTTACA  942

seq1  TGTGATACCCAATGTATCAGGTATGAATTTATTACTGCTCTGGACAAATG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATACCCAATGTATCAGGTATGAATTTATTACTGCTCTGGACAAATG  992

seq1  TCCATGTTGAATAATAACTGCACAGCTACACTGAACTGTGTTTGACTATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTTGAATAATAACTGCACAGCTACACTGAACTGTGTTTGACTATA  1042

seq1  GCATGGTAAAGAAATACTCAGCCTTCCCTTTCACTTGGAAAAATGCTTGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTAAAGAAATACTCAGCCTTCCCTTTCACTTGGAAAAATGCTTGT  1092

seq1  GTCCAGTATGAACGAGACACAAAGTGAAACTTTCCCACTTCTAGCCCTCC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTATGAACGAGACACAAAGTGAAACTTTCCCACTTCTAGCCCTCC  1142

seq1  AGCCTTGCCTCCCGTCATCACTGGTGAAGAGTTTGGAATTC  1187
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGCCTCCCGTCATCACTGGTGAAGAGTTTGGAATTC  1183

seq1: chr3_80654654_80655815
seq2: B6Ng01-074C05.g_68_1214

seq1  GAATTCCTTGACCTGTTTTATGCTTTCGGAGAGTGCTTCCCAAAACCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGACCTGTTTTATGCTTTCGGAGAGTGCTTCCCAAAACCTCT  50

seq1  GCTGGACTCAGTTCTGTTTCATCTATTAGAAATACATGTCAGTCCCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACTCAGTTCTGTTTCATCTATTAGAAATACATGTCAGTCCCACCA  100

seq1  CTTCATTCACATAGTGTCTCTTTTCTGGCACTGAAGAGGATGGGCAACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTCACATAGTGTCTCTTTTCTGGCACTGAAGAGGATGGGCAACCC  150

seq1  ACGTCCATAGTTCATTCCACTCTTACCTGCAAAGTGCTGATATGAACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCATAGTTCATTCCACTCTTACCTGCAAAGTGCTGATATGAACAGG  200

seq1  GGTCCCCGTGCCGTTTACAGTATTCTTCTTAGCTGCGTTTCCACCTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCGTGCCGTTTACAGTATTCTTCTTAGCTGCGTTTCCACCTTTCC  250

seq1  CATCTGCTTGCTCAGCCTTAGCTATTCGGGCCTTCTCGGCTTCAACCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTTGCTCAGCCTTAGCTATTCGGGCCTTCTCGGCTTCAACCCTT  300

seq1  TTGGGATTGTTCAGCATCACCTGGACCACAGCGTACTCCACGAGGGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATTGTTCAGCATCACCTGGACCACAGCGTACTCCACGAGGGAGGC  350

seq1  AAACCCGAAGAGCAGGCAGGCAATGAGCCACACATCCAGCGCCTTCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCGAAGAGCAGGCAGGCAATGAGCCACACATCCAGCGCCTTCACAT  400

seq1  AAGACACTTTAGGAAGCTCGGCTGCGAGGGTGGTGCACTCTGAGGCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACTTTAGGAAGCTCGGCTGCGAGGGTGGTGCACTCTGAGGCCAAA  450

seq1  CTGAGCACGGAGAAGATGCCTAGCAACAGGAAAATCAGCTGGGTTTAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCACGGAGAAGATGCCTAGCAACAGGAAAATCAGCTGGGTTTAGCC  500

seq1  CTGGAAAATGCTTTACAACTATTGCTCATTCACTATTGAGCAAGCAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAATGCTTTACAACTATTGCTCATTCACTATTGAGCAAGCAAACC  550

seq1  TTAAGTGTCTTTAAGGATGAAAGACTGGAAGAAATATATTGTACTATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGTCTTTAAGGATGAAAGACTGGAAGAAATATATTGTACTATGTA  600

seq1  AAGTAGTAACTGTGGTTAGTAAATATTTGTAAATATACATCATTTAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTAACTGTGGTTAGTAAATATTTGTAAATATACATCATTTAAAAA  650

seq1  TTAGATGGTTTTAAACCAAGGTTTGGAAGCACAGCGTGGATTTGATTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGGTTTTAAACCAAGGTTTGGAAGCACAGCGTGGATTTGATTTGA  700

seq1  GGATTAATCATGAAACCTTGAGAGTGTGTCTGAGAGAACTGACGAGCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAATCATGAAACCTTGAGAGTGTGTCTGAGAGAACTGACGAGCTCT  750

seq1  GTGATTTATTCCTTTTTTTCTGAGTTCTTGGCTTTTTGTAGAGTTTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTATTCCTTTTTTTCTGAGTTCTTGGCTTTTTGTAGAGTTTTATT  800

seq1  TGTAGGAGGAATTTTCACCCACAAACAAGAATAGAGCACATAAAA-TTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTAGGAGGAATTTTCACCCACAAACAAGAATAGAGCACATAAAATTTTT  850

seq1  GATAAGGTTTTTTGTTTGTTGGTTGGTTGTTTCATTTACAATATAATGCC  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GATAAGGTTTTTTGTTTGTTGGGTGGTTGTTTCATTTACAATATAATGCC  900

seq1  TAGCAGAGAAGATAAAGTATAGAGCATCCCTGTTCATTTCAGAAAGAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAGAAGATAAAGTATAGAGCATCCCTGTTCATTTCAGAAAGAAAA  950

seq1  TCTCACCTTTTTAAGATAAGGAATACAATCCTGCTATGGGAAATACTAAC  999
      ||||||  |||| |||||||||||||||||||||||||||||||||||||
seq2  TCTCAC--TTTTTAGATAAGGAATACAATCCTGCTATGGGAAATACTAAC  998

seq1  TTCAAATGGAAACCAGCATTATATATAAACACGTGTAATGATCATACAGT  1049
      ||| |||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTC-AATGGAAACCAGCATTATATATAAACACGTGT-ATGATCATACAGT  1046

seq1  AATTAGGTTTATGTAACATAAGACAATTTAAGCAATCATAAAACTCCAG-  1098
       | |||| ||||||||  || ||| |||||||| ||||| ||||| ||| 
seq2  TA-TAGG-TTATGTAAACTAGGAC-ATTTAAGCCATCAT-AAACTTCAGA  1092

seq1  AGAGGAATTGTTCCAATTACAAGTGTCTTTCTCCT-CTCTAGTCATTCGG  1147
      |||||||||||||  ||||||   |  |||||||| ||| ||||||  ||
seq2  AGAGGAATTGTTC--ATTACA--GGCTTTTCTCCTCCTCGAGTCATCGGG  1138

seq1  TCTTCTCTTCCTTCT  1162
            |||||||||
seq2  ------CTTCCTTCT  1147