BAC Information

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BAC

Clone NameB6Ng01-074C14
Chromosome3 (Build37)
Map Location 147,013,241 - 147,163,884
singlet/doubletdoublet
Overlap genenone
Upstream geneSsx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074C14.bB6Ng01-074C14.g
ACCDH891088DH891089
length1,1491,037
definitionDH891088|Mus musculus domesticus DNA, BAC clone: B6Ng01-074C14, 5' end.DH891089|Mus musculus domesticus DNA, BAC clone: B6Ng01-074C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,013,241 - 147,014,380)(147,162,840 - 147,163,884)
sequence
gaattcccttcactgtaactttccagtctctacactagatatcagatttg
aatatacagctacaaactcaactcctccatttgaccatctttttataatt
gttttgatagactacatgcaaatgcaaggccctacagtccttgggaaaga
gcttctcccactgtgttttctggatcatagttcccaaaatgaacttgtat
ccttatatatcacttatcatatacttctactaaatgaacaaattaaagtc
cttctgctttcaaacacatccgagttggttcttctgttgccatttcaaac
aggaccatcttgggtgaaccactgtgttagtctctatagtactgcagttc
tcttacatgctgtcctagaccaggcacaaatttcctgctaataagtgtat
tgttgccttatgcattagagtctcaactataagccctcataaaatacttc
agttggcttcaaaacaagacatggggctttgcaaaagcaaagcaggaaaa
tcaagtgtagatagagcatcttgtcctcctccctacttcaagtcttcagc
ataactgttcaaacctctggtttcatgacatcgacaattgtgtgagaatt
aaagttgaccataagcaccagaaaccgaagaaaatcaaactgaccgaggg
taacacaaacttctcatgctatgctctcaaatatacagcctggggtgagc
tatgcacttgtagaataccacttagagtcctttcatggtattgttttttt
tatgttgtcttagaagttaatatacagcccctttaaactaccattagtta
aactgaattattctttttaaggataataaaataatgttaagtttgcatca
acaaatttgatttacaaatatgaggtactcggaaatgtcttttgtttttt
tcctcaaaacaaaatttttctctcccctttctgtagtaatgggagagaga
cgtgaggcagatggtttgggagcacacaattgaagcaggctggtgaaggg
cacagcagcaagcgcagaaaacagactctttgttcgcatcccataaggat
gctgagaattgattggcgatttttttctgtaaattacagggacctttcct
tcttggtatcttccttaaaataattttgttacagccattttttctattt
gaattctgcatttcatttggtttcctcctgttcactattggtaaatacaa
atgagattcaattttgtgtgttaatcttatatctggagacattgctatag
ttataagttctaaggcatttttttttttttttgcttatttgtttttatag
cccttgtgatccttcaacattaatcatcacaccataggaaaacactgcct
tcttctttatccggtttatgtttactgtctttttcttatcttatcagtta
ggacacatagcatgtgtcggataaaagtggggcaataggaatgggtgttc
ttattcatgttcagtcttaggggacagcattctgcttctgacctctactt
actgagcagcggtgtagatgttctccatcagcatggagcattgtgagcta
aataggctttgtgagatatgagaataaaaaccgtgggagcattgtcaggg
attagtggggcagagttcacatgaccccacattcttagtttgactttact
gatttgttctttacagatatgagtttcatgtctgtcttcaattcagtgag
tgtgagcaaacacacaaacacacacacacacacacacacacacacaagca
tgtgcatgtatgtgtgttggtgtttgggcatgtatgttaatggaatattc
ttattttattgtagtttttcaaaaattaagttttagtagaagacaagctt
tattacatatatttttccaagccagtaagaatagacacatttgccaggca
gtggtggcccacgccttttaatcccagcactcggggaggcagaggcaggc
tgatttctgagtttgaggtcagcctgtttctacagagtgagttccaggac
agccagggctacacagagaaaccctgtcttgaacctctctccctccctcc
cccccccaaataggcacattctcaccctttattaacccacacgtaataag
actaactcattattgagtgatctggctgcaaggatcctgttttttatcat
gaaataggatttaagatctctactactgaagttgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_147013241_147014380
seq2: B6Ng01-074C14.b_46_1194

seq1  GAATTCCCTTCACTGTAACTTTCCAGTCTCTACACTAGATATCAGATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCACTGTAACTTTCCAGTCTCTACACTAGATATCAGATTTG  50

seq1  AATATACAGCTACAAACTCAACTCCTCCATTTGACCATCTTTTTATAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACAGCTACAAACTCAACTCCTCCATTTGACCATCTTTTTATAATT  100

seq1  GTTTTGATAGACTACATGCAAATGCAAGGCCCTACAGTCCTTGGGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATAGACTACATGCAAATGCAAGGCCCTACAGTCCTTGGGAAAGA  150

seq1  GCTTCTCCCACTGTGTTTTCTGGATCATAGTTCCCAAAATGAACTTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCCCACTGTGTTTTCTGGATCATAGTTCCCAAAATGAACTTGTAT  200

seq1  CCTTATATATCACTTATCATATACTTCTACTAAATGAACAAATTAAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATATATCACTTATCATATACTTCTACTAAATGAACAAATTAAAGTC  250

seq1  CTTCTGCTTTCAAACACATCCGAGTTGGTTCTTCTGTTGCCATTTCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTTTCAAACACATCCGAGTTGGTTCTTCTGTTGCCATTTCAAAC  300

seq1  AGGACCATCTTGGGTGAACCACTGTGTTAGTCTCTATAGTACTGCAGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCATCTTGGGTGAACCACTGTGTTAGTCTCTATAGTACTGCAGTTC  350

seq1  TCTTACATGCTGTCCTAGACCAGGCACAAATTTCCTGCTAATAAGTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACATGCTGTCCTAGACCAGGCACAAATTTCCTGCTAATAAGTGTAT  400

seq1  TGTTGCCTTATGCATTAGAGTCTCAACTATAAGCCCTCATAAAATACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCTTATGCATTAGAGTCTCAACTATAAGCCCTCATAAAATACTTC  450

seq1  AGTTGGCTTCAAAACAAGACATGGGGCTTTGCAAAAGCAAAGCAGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCTTCAAAACAAGACATGGGGCTTTGCAAAAGCAAAGCAGGAAAA  500

seq1  TCAAGTGTAGATAGAGCATCTTGTCCTCCTCCCTACTTCAAGTCTTCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGTAGATAGAGCATCTTGTCCTCCTCCCTACTTCAAGTCTTCAGC  550

seq1  ATAACTGTTCAAACCTCTGGTTTCATGACATCGACAATTGTGTGAGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGTTCAAACCTCTGGTTTCATGACATCGACAATTGTGTGAGAATT  600

seq1  AAAGTTGACCATAAGCACCAGAAACCGAAGAAAATCAAACTGACCGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGACCATAAGCACCAGAAACCGAAGAAAATCAAACTGACCGAGGG  650

seq1  TAACACAAACTTCTCATGCTATGCTCTCAAATATACAGCCTGGGGTGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACAAACTTCTCATGCTATGCTCTCAAATATACAGCCTGGGGTGAGC  700

seq1  TATGCACTTGTAGAATACCACTTAGAGTCCTTTCATGGTATTG-TTTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TATGCACTTGTAGAATACCACTTAGAGTCCTTTCATGGTATTGTTTTTTT  750

seq1  TATGTTGTCTTAGAAGTTAATATACAGCCCC-TTAAACTACCATTAGTTA  798
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATGTTGTCTTAGAAGTTAATATACAGCCCCTTTAAACTACCATTAGTTA  800

seq1  AACTGAATTATTCTTTTTAAGGATAATAAAATAATGTTAAGTTTGCATCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAATTATTCTTTTTAAGGATAATAAAATAATGTTAAGTTTGCATCA  850

seq1  ACAAATTTGATTTACAAATATGAGGTACTCGGAAATGTCTTT--GTTTTT  896
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  ACAAATTTGATTTACAAATATGAGGTACTCGGAAATGTCTTTTGTTTTTT  900

seq1  TCCTCAAAACAAAATTTTTCTCTCCCCTTTCTGTAGTAATGGGAGAGAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAAACAAAATTTTTCTCTCCCCTTTCTGTAGTAATGGGAGAGAGA  950

seq1  CGTGAGGCAGATGG-TTGGGAGCACACAAATTGAAGCAGGGCTGGTG-AG  994
      |||||||||||||| |||||||||||| |||||||||| |||||||| ||
seq2  CGTGAGGCAGATGGTTTGGGAGCACAC-AATTGAAGCA-GGCTGGTGAAG  998

seq1  GGCACAGCAGCAAGCGCAG-AAACAGACTCTTTGTTCGCATCCCATAAGG  1043
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGCACAGCAGCAAGCGCAGAAAACAGACTCTTTGTTCGCATCCCATAAGG  1048

seq1  ATGCTGAGAAATGA-TGGCGATTGTTTCCTGTAAA-TACAGGGGACCCTT  1091
      |||||||||| ||| |||||||| ||| ||||||| |||| |||||| ||
seq2  ATGCTGAGAATTGATTGGCGATTTTTTTCTGTAAATTACA-GGGACCTTT  1097

seq1  CCTTCCATGTATCTT-CTTAAAATAATTTTGTACAAGCCA--TTTTCTAT  1138
      |||||   ||||||| ||||||||||||||||   |||||  ||||||||
seq2  CCTTCTTGGTATCTTCCTTAAAATAATTTTGTTACAGCCATTTTTTCTAT  1147

seq1  TT  1140
      ||
seq2  TT  1149

seq1: chr3_147162840_147163884
seq2: B6Ng01-074C14.g_71_1107 (reverse)

seq1  GGACAACATCAGTAGTAGAGAATCTAAAATCCTATATCATGAATAAAAAA  50
      ||||||| |||||||||||| |||| ||||||||| ||||| ||||||||
seq2  GGACAACTTCAGTAGTAGAG-ATCTTAAATCCTATTTCATG-ATAAAAAA  48

seq1  CAGAGATCCTTGGCATGCAGATTCACTCAATAATGAGTTATGTCTTAATC  100
      ||| ||||||| |||  |||| |||||||||||||||||| ||||| || 
seq2  CAG-GATCCTT-GCAGCCAGA-TCACTCAATAATGAGTTA-GTCTT-ATT  93

seq1  ACGTGTGGGTTAATAAAGGGTGAGAATGTGCCTATTTTGGGGGGGGGGAG  150
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  ACGTGTGGGTTAATAAAGGGTGAGAATGTGCCTATTT--GGGGGGGGGAG  141

seq1  GGAGGGGAGGAGAGGTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGT  200
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGG--AGAGAGGTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGT  189

seq1  CCTGGAACTCACTCTGTAG-AACAGGCTGACCTCAAACTCAGAAATCAGC  249
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTCTGTAGAAACAGGCTGACCTCAAACTCAGAAATCAGC  239

seq1  CTGCCTCTGCCT-CCCGAGTGCTGGGATT-AAAGGCGTGGGCCACCACTG  297
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  CTGCCTCTGCCTCCCCGAGTGCTGGGATTAAAAGGCGTGGGCCACCACTG  289

seq1  CCTGGCAAATGTGTCTATTCTTACTGGCTTGGAAAAATATATGTAATAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAAATGTGTCTATTCTTACTGGCTTGGAAAAATATATGTAATAAA  339

seq1  GCTTGTCTTCTACTAAAACTTAATTTTTGAAAAACTACAATAAAATAAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTTCTACTAAAACTTAATTTTTGAAAAACTACAATAAAATAAGA  389

seq1  ATATTCCATTAACATACATGCCCAAACACCAACACACATACATGCACATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCATTAACATACATGCCCAAACACCAACACACATACATGCACATG  439

seq1  CTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTTTGCTCACACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTTTGCTCACACT  489

seq1  CACTGAATTGAAGACAGACATGAAACTCATATCTGTAAAGAACAAATCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAATTGAAGACAGACATGAAACTCATATCTGTAAAGAACAAATCAG  539

seq1  TAAAGTCAAACTAAGAATGTGGGGTCATGTGAACTCTGCCCCACTAATCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCAAACTAAGAATGTGGGGTCATGTGAACTCTGCCCCACTAATCC  589

seq1  CTGACAATGCTCCCACGGTTTTTATTCTCATATCTCACAAAGCCTATTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAATGCTCCCACGGTTTTTATTCTCATATCTCACAAAGCCTATTTA  639

seq1  GCTCACAATGCTCCATGCTGATGGAGAACATCTACACCGCTGCTCAGTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAATGCTCCATGCTGATGGAGAACATCTACACCGCTGCTCAGTAA  689

seq1  GTAGAGGTCAGAAGCAGAATGCTGTCCCCTAAGACTGAACATGAATAAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGTCAGAAGCAGAATGCTGTCCCCTAAGACTGAACATGAATAAGA  739

seq1  ACACCCATTCCTATTGCCCCACTTTTATCCGACACATGCTATGTGTCCTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCATTCCTATTGCCCCACTTTTATCCGACACATGCTATGTGTCCTA  789

seq1  ACTGATAAGATAAGAAAAAGACAGTAAACATAAACCGGATAAAGAAGAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATAAGATAAGAAAAAGACAGTAAACATAAACCGGATAAAGAAGAAG  839

seq1  GCAGTGTTTTCCTATGGTGTGATGATTAATGTTGAAGGATCACAAGGGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTTTTCCTATGGTGTGATGATTAATGTTGAAGGATCACAAGGGCT  889

seq1  ATAAAAACAAATAAGCAAAAAAAAAAAAAAATGCCTTAGAACTTATAACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACAAATAAGCAAAAAAAAAAAAAAATGCCTTAGAACTTATAACT  939

seq1  ATAGCAATGTCTCCAGATATAAGATTAACACACAAAATTGAATCTCATTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAATGTCTCCAGATATAAGATTAACACACAAAATTGAATCTCATTT  989

seq1  GTATTTACCAATAGTGAACAGGAGGAAACCAAATGAAATGCAGAATTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTACCAATAGTGAACAGGAGGAAACCAAATGAAATGCAGAATTC  1037