BAC Information

Click to search

BAC

Clone NameB6Ng01-074K03
Chromosome3 (Build37)
Map Location 41,008,371 - 41,166,273
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074K03.bB6Ng01-074K03.g
ACCDH891420DH891421
length1,058879
definitionDH891420|Mus musculus domesticus DNA, BAC clone: B6Ng01-074K03, 5' end.DH891421|Mus musculus domesticus DNA, BAC clone: B6Ng01-074K03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,165,205 - 41,166,273)(41,008,371 - 41,008,603)
sequence
gaattctttaagcgagtaccgagggaacaagtaggtgctacacctgaata
aggctgtgccataacatttcatataccttttgttaaggcgctagattaaa
tagctagtgcacgtttagaggcaatattgtttataaaaaaaatatgttgc
ccgggttagaattgcatccagtgtctgataaaccaggttaggttgcaaga
acggcagattgatgtgcaggagttttttgaagcagtaactcattaggtac
atgtacatcaacggtcctgcccgtctactcattgcttccgagtatccact
gcacaaggggagcatctgtggagctacgctaaagcagctttattatcacc
tgtcctctactcccgtgggtgtgcagaacggaagctgatggttcctgagc
ctttggggagggcacagacaccctagagagatgtcctagatgggtcaaaa
cccataagcagtttgtgacttgggaacattttgctgactcctagcagtga
gtgctagccaaggtccaaaaattaggaagaagtcatgcctccactgaggt
ggacagactagagatgggctagcagcatcatgagatgagtcgctaggctc
ttccctgaggagggaaagaggttcataaatagaagaatcttgtagttgcc
caaatatataccagatactaaacaagaaatgactgtgctatctctaataa
tattatacattgcctatcagatcctgagagccaagtgtgtttggttatgg
aaaaactaagatatttctatcatatgaacaacattctgttttgagccccc
aagccatgacctcagccatactaagggaaatggctgggagagtcatggac
agttgacacggatctttcttatgctactgaattgtatctcctaatacatg
cccaggcactatcttttgtttttccttaccgatcatactcggctttctga
tctgataagcatatataaacgtaaaactctgttctacgcctcctttccga
cgaggtccttaatgttcagtagcttagccacttctcggatttttttaaag
aactaggc
gaattcttggttttctggacagatggcatactttcttctccttatgcttg
tcctgaaatacaaaagaaggaggaggaagagaaggaggaataggaagaag
aagaaaagagggagggggagaagaaaagacattgtttgtggacatgttct
ctctctctttttctctctttctctctttcttcctctctctttcactggtg
ttatcacagcctccctgaagaggagaggaggggatccttcctgtgagcct
gtgatcctactatcctgtgatcctggggagttgagctgtaactggggtgt
gggttgtgtccagaagatgtaccccattttttaatggggatatttgaatt
tctggagttcagcttttgagctccttgtatatattggatattagtcccct
atcagatttaggattggtaaaaattctttcccaatctgttggtggccttt
ttgtcttattgacagtatcttttgccctacagaagctttgcaattttatt
aggtcccatttgtcaattcttgatcttacagcacaaagcatttctattct
gtttaggaattttttccccctgtgcccatatctttgaggctttttcccac
tctctcctctataaatttcagtgtctctggttttatctggagttctttaa
tccacttagacttgagctttgtacaaggagataagaatggattatttctc
attcttctacagaataactgccagttgtgccagcaccattggttgaaaat
gctcttttttttccccactggatggttttaactcccttgtcgaagatcaa
gcgaccataggtgtgtgggttcattctgggtcttcattctattcattgat
ctacctgtctgtcgttgtactagtacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41165205_41166273
seq2: B6Ng01-074K03.b_44_1101 (reverse)

seq1  GCCTAG-TCTCTAAACAAAATCC-AGAAGTGGGTTAAGCTTACTGAGCAT  48
      |||||| ||| |||| ||||||| |||||| || ||||| |||||| |||
seq2  GCCTAGTTCTTTAAA-AAAATCCGAGAAGT-GGCTAAGC-TACTGAACAT  47

seq1  TAAGGACCCTCGTGGGGAAAGGAGGCCTAGAACAGAGTTTTACGTTTATA  98
      |||||| ||||||  ||||||||||| |||||||||||||||||||||||
seq2  TAAGGA-CCTCGT-CGGAAAGGAGGCGTAGAACAGAGTTTTACGTTTATA  95

seq1  TATTGCCTATCAGATCCTGAAAGCCAAGTTTGTTTGGTTATGGAAAAACA  148
      || ||| |||||||| | ||||||| ||| || | || || |||||||||
seq2  TA-TGCTTATCAGAT-CAGAAAGCCGAGTATGATCGG-TAAGGAAAAACA  142

seq1  AAAGATAGTGCCTGGGCATGTATTTAGGAGATAAAAATTCAGTAGCATAA  198
      |||||||||||||||||||||| ||||||||| | ||||||||||||| |
seq2  AAAGATAGTGCCTGGGCATGTA-TTAGGAGAT-ACAATTCAGTAGCAT-A  189

seq1  AGAAAGAACCGTTTCAACTGTCCATGACTCTTCCAGCCATTTCCCTTAGT  248
      ||||||| |||| |||||||||||||||||| ||||||||||||||||||
seq2  AGAAAGATCCGTGTCAACTGTCCATGACTCTCCCAGCCATTTCCCTTAGT  239

seq1  ATGGCTTGGGGTCATGGCTTGGGGGCTCAAAACAGAATGTTGTTCATATG  298
      ||||| || |||||||||||||||||||||||||||||||||||||||||
seq2  ATGGC-TGAGGTCATGGCTTGGGGGCTCAAAACAGAATGTTGTTCATATG  288

seq1  ATAGAAATATCTTCGTTTTTCCATAACCAAACACACTTGGCTCTCAGGAT  348
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATATCTTAGTTTTTCCATAACCAAACACACTTGGCTCTCAGGAT  338

seq1  CTGATAGGCAATGTATAATATTATTAGAGATAGCACAGTCATTTCTTGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGGCAATGTATAATATTATTAGAGATAGCACAGTCATTTCTTGTT  388

seq1  TAGTATCTGGTATATATTTGGGCAACTACAAGATTCTTCTATTTCTGAAC  448
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAGTATCTGGTATATATTTGGGCAACTACAAGATTCTTCTATTTATGAAC  438

seq1  CTCTTTCCCTCCTCAGGGAAGAGCCTAGCGACTCATCTCATGATGCTGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCCTCCTCAGGGAAGAGCCTAGCGACTCATCTCATGATGCTGCT  488

seq1  AGCCCATCTCTAGTCTGTCCACCTCAGTGGAGGCATGACTTCTTCCTAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATCTCTAGTCTGTCCACCTCAGTGGAGGCATGACTTCTTCCTAAT  538

seq1  TTCTGGACCTTGGCTAGCACTCACTGCTAGGAGTCAGCAAAATGTTCCCA  598
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGACCTTGGCTAGCACTCACTGCTAGGAGTCAGCAAAATGTTCCCA  588

seq1  AGTCACAAACTGCTTATTGGTTTTGACCCATCTAGGACATCTCTCTAGGG  648
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGTCACAAACTGCTTATGGGTTTTGACCCATCTAGGACATCTCTCTAGGG  638

seq1  TGTCTGTGCCCTCCCCAAAGGCTCAGGAACCCTCAGCTTCCGTTCTGCAC  698
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTCTGTGCCCTCCCCAAAGGCTCAGGAACCATCAGCTTCCGTTCTGCAC  688

seq1  ACCCACGGGAGTAGAGGACAGGTGATAATAAAGCTGCTTTAGCGTAGCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACGGGAGTAGAGGACAGGTGATAATAAAGCTGCTTTAGCGTAGCTC  738

seq1  CACAGATGCTCACCTTGTGCAGTGGATACTCGGAAGCAATGAGTAGACTG  798
      ||||||||||| |||||||||||||||||||||||||||||||||||| |
seq2  CACAGATGCTCCCCTTGTGCAGTGGATACTCGGAAGCAATGAGTAGACGG  788

seq1  GCAGGACCGTTGATGTACATGTACCTAATGAGTTACTGCTTCAAAAAACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACCGTTGATGTACATGTACCTAATGAGTTACTGCTTCAAAAAACT  838

seq1  CCTGCACATCAATCTGCCGTTCTTGCAACCTAACCTGGTTTATCAGACAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACATCAATCTGCCGTTCTTGCAACCTAACCTGGTTTATCAGACAC  888

seq1  TGGATGCAATTCTAACACTGGCAACATATTTTTTTTATAAACAATATTGC  948
      |||||||||||||||| | |||||||||||||||||||||||||||||||
seq2  TGGATGCAATTCTAACCCGGGCAACATATTTTTTTTATAAACAATATTGC  938

seq1  CTCTAAACGTGCACTAGCTATTTAATCTAGTGCCTTAACAAAAGGTATAT  998
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTCTAAACGTGCACTAGCTATTTAATCTAGCGCCTTAACAAAAGGTATAT  988

seq1  GAAATGTTATGGCATAGATTTATTCAGGTGTAGTACCTACTTGTTCCCTG  1048
      |||||||||||||| ||  |||||||||||||| ||||||||||||||| 
seq2  GAAATGTTATGGCACAGCCTTATTCAGGTGTAGCACCTACTTGTTCCCT-  1037

seq1  TGGTACGTGCCTAAAGAATTC  1069
       |||||  || ||||||||||
seq2  CGGTACTCGCTTAAAGAATTC  1058

seq1: chr3_41008371_41008603
seq2: B6Ng01-074K03.g_66_299

seq1  GAATTCAAGGTTTTCAGGACAGATGGCATACTTTCTTCTCCTTATGCTTG  50
      ||||||  ||||||| ||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTTTTCTGGACAGATGGCATACTTTCTTCTCCTTATGCTTG  50

seq1  TCCTGAAATAGAAAAGAAGGAGGAGGAAGAGAAGGAGGAAGAGGAAGAAG  100
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  TCCTGAAATACAAAAGAAGGAGGAGGAAGAGAAGGAGGAATAGGAAGAAG  100

seq1  AAGAAAAGAGGGAGGGGGAGAAGAAGAGACATTGTTTGTGGACATGTTCT  150
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAGAAAAGAGGGAGGGGGAGAAGAAAAGACATTGTTTGTGGACATGTTCT  150

seq1  CTCTCTCTTTTTCTCTCTTTCTCTCTTTCTTCCTCTCTCATACAC-----  195
      ||||||||||||||||||||||||||||||||||||||| | |||     
seq2  CTCTCTCTTTTTCTCTCTTTCTCTCTTTCTTCCTCTCTCTTTCACTGGTG  200

seq1  ---ACACACACACACAGAGAAGAGAAGAGGAGAGGAGGGGA  233
          ||||  | | |        ||||||||||||||||||
seq2  TTATCACAGCCTCCC-------TGAAGAGGAGAGGAGGGGA  234