BAC Information

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BAC

Clone NameB6Ng01-075I20
Chromosome3 (Build37)
Map Location 101,548,710 - 101,628,590
singlet/doubletdoublet
Overlap geneBC037703
Upstream geneVtcn1, Trim45, Ttf2, Igsf2, Ptgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3, LOC100043032, Atp1a1, LOC100043036
Downstream geneSlc22a15, Nhlh2, LOC100043047, Casq2, Vangl1, EG433633, Ngfb, Tspan2, Tshb, Sycp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075I20.bB6Ng01-075I20.g
ACCDH892083DH892084
length1,178651
definitionDH892083|Mus musculus domesticus DNA, BAC clone: B6Ng01-075I20, 5' end.DH892084|Mus musculus domesticus DNA, BAC clone: B6Ng01-075I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,627,408 - 101,628,590)(101,548,710 - 101,549,358)
sequence
gaattcaaatcgcatgaacactttccatttatagtttaggtgtctgacct
ccctgtttaatccaacctctgcacaccagaagtcatgtggtgccctcatc
gaaagcatcaaaagtcctctgaaaagcgaggcgggatcagttgccgttga
gttggccactgcccacaccagggaccaaagttcactattgttggactttc
tattactttcttcaaaaatgtagctggaggaacaaagaggctgccagtga
gctgcctgggcacagccagagttcagggtccctccggaatagctgcacca
gcaaccagtttacagtgtcctttgcgtggtatgctgcctgctctcttcct
cgacagcttaactggtttctggagagtgggagtgggtggattcacatcca
ttttcccactgaactcagaatcatctcaatggctcacattgtccggacag
acagactttcatctcaccttgaattctgtaagggttagtcatgcatactg
accctaggtcatcgtgacaggagaaaagaaagagtgacactttaaagtcc
tatcccattctccttaatgccagaatgctcagctatcccaagactagaac
cattggacagactgcttcaagcactcaaagctcttccatgtgctgtcagt
ctccccaggtagttggtagcccctcggagccttaggtggcttgccagggg
gcgtggtatctaggttacctattgctgtgacttcagagaagggatgggca
cagccagagatttgggttgtgtgtgaggctcagtggattgatttctgctt
tcctttcttctctcctggacttcaggttccctccagagttctgggtttta
tgcttaacttgtggcttcacaaaccccaaaactccttgagtcaagtcact
ctgtttgccacagccccaggtgggttagtgccaaaaaaaaaacccaaaaa
aaacaaaaaacaaacaaacaaaaaaacgtacatctcagcactccccaggc
gtttctggtgcacatcatcacattgctgaaggctgcaaggtgcttgagct
gcctgactggacaagtcggcacccctctgccgaatcaacctccccagcgg
tgtgaactcaactcctcttctctttttctgacctcaagttgacccccagc
ctcttccaggtacgtccactgaaggcct
gaattcaagtttaaaaaattatagtttccttttggggggtgagggggatg
cagttggagagatggctcagtggtgagagcccttgctgctcttccagagg
acctgagtttggttcccagcagccatgtcagcctgctcacaacttcacct
ccaggagctccagcgcccacttctgcctctgagggacctgcactcatatg
caaacactcgtacacacaaatatttatttgttttttttacatctttacag
ttttttacattttaaatatttttctttaaaactaaaaaataattatttta
tatatgtatatgaatgttttgcctgcatgtttgtctgttgttcaagtgat
gtctgctgcccatggaggccagaagaggacactcgatctccagatcagga
gttacagatggttgggaacagacatgttgtgctggctggaatggagcctg
ggtcctctgaaaaacaaccagtaatttcaaccactgagccacctctctac
ccccttaagtgtttacatgtgcatatatatatatgcatatatataatgta
ttttaatcatattttctcccattacccattcttctctctttactccagtc
tttttctctttcctccccctcctccctgtcctcctcctctttcctccccc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_101627408_101628590
seq2: B6Ng01-075I20.b_45_1222 (reverse)

seq1  AGGCCTTTCAGTGGGACGGTGACATGGAAGAGGCTGGGGGCCAAAACCTG  50
      ||||| |||||| |||||   || |||||||||||||||| |  ||| ||
seq2  AGGCC-TTCAGT-GGACG--TACCTGGAAGAGGCTGGGGGTC--AACTTG  44

seq1  AGGTCAGAAAAAGAGAAGAGGAGTTGAGCTCACA-CGCTGGGGAGG-TGA  98
      |||||||||||||||||||||||||||| ||||| ||||||||||| |||
seq2  AGGTCAGAAAAAGAGAAGAGGAGTTGAGTTCACACCGCTGGGGAGGTTGA  94

seq1  -TCGGCAGAGGGGTGCCGACCTGTCCAGTCAGGCAGCTCAAGCAACCTTG  147
       ||||||||||||||||||| |||||||||||||||||||||| ||||||
seq2  TTCGGCAGAGGGGTGCCGACTTGTCCAGTCAGGCAGCTCAAGC-ACCTTG  143

seq1  CAGCCCTCAGCAATGTGATGATGTGCA-CAGAAACCGCCTGGGGAGTGCT  196
      ||||| ||||||||||||||||||||| |||||| |||||||||||||||
seq2  CAGCCTTCAGCAATGTGATGATGTGCACCAGAAA-CGCCTGGGGAGTGCT  192

seq1  GAGATGTACGTTTTTTTTGTTTGTTTGTTTTTTGTTTTTTTTGGGTTTTT  246
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTACG-TTTTTTTGTTTGTTTGTTTTTTGTTTTTTTTGGGTTTTT  241

seq1  TTTTTGGCACTAACCCACCTGGGGCTGTGGCAAACAGAGTGACTTGACTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGCACTAACCCACCTGGGGCTGTGGCAAACAGAGTGACTTGACTC  291

seq1  AAGGAGTTTTGGGGTTTGTGAAGCCACAAGTTAAGCATAAAACCCAGAAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTTTGGGGTTTGTGAAGCCACAAGTTAAGCATAAAACCCAGAAC  341

seq1  TCTGGAGGGAACCTGAAGTCCAGGAGAGAAGAAAGGAAAGCAGAAATCAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGGGAACCTGAAGTCCAGGAGAGAAGAAAGGAAAGCAGAAATCAA  391

seq1  TCCACTGAGCCTCACACACAACCCAAATCTCTGGCTGTGCCCATCCCTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGAGCCTCACACACAACCCAAATCTCTGGCTGTGCCCATCCCTTC  441

seq1  TCTGAAGTCACAGCAATAGGTAACCTAGATACCACGCCCCCTGGCAAGCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTCACAGCAATAGGTAACCTAGATACCACGCCCCCTGGCAAGCC  491

seq1  ACCTAAGGCTCCGAGGGGCTACCAACTACCTGGGGAGACTGACAGCACAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGGCTCCGAGGGGCTACCAACTACCTGGGGAGACTGACAGCACAT  541

seq1  GGAAGAGCTTTGAGTGCTTGAAGCAGTCTGTCCAATGGTTCTAGTCTTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGCTTTGAGTGCTTGAAGCAGTCTGTCCAATGGTTCTAGTCTTGG  591

seq1  GATAGCTGAGCATTCTGGCATTAAGGAGAATGGGATAGGACTTTAAAGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTGAGCATTCTGGCATTAAGGAGAATGGGATAGGACTTTAAAGTG  641

seq1  TCACTCTTTCTTTTCTCCTGTCACGATGACCTAGGGTCAGTATGCATGAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTTTCTTTTCTCCTGTCACGATGACCTAGGGTCAGTATGCATGAC  691

seq1  TAACCCTTACAGAATTCAAGGTGAGATGAAAGTCTGTCTGTCCGGACAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTTACAGAATTCAAGGTGAGATGAAAGTCTGTCTGTCCGGACAAT  741

seq1  GTGAGCCATTGAGATGATTCTGAGTTCAGTGGGAAAATGGATGTGAATCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCATTGAGATGATTCTGAGTTCAGTGGGAAAATGGATGTGAATCC  791

seq1  ACCCACTCCCACTCTCCAGAAACCAGTTAAGCTGTCGAGGAAGAGAGCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTCCCACTCTCCAGAAACCAGTTAAGCTGTCGAGGAAGAGAGCAG  841

seq1  GCAGCATACCACGCAAAGGACACTGTAAACTGGTTGCTGGTGCAGCTATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATACCACGCAAAGGACACTGTAAACTGGTTGCTGGTGCAGCTATT  891

seq1  CCGGAGGGACCCTGAACTCTGGCTGTGCCCAGGCAGCTCACTGGCAGCCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGGGACCCTGAACTCTGGCTGTGCCCAGGCAGCTCACTGGCAGCCT  941

seq1  CTTTGTTCCTCCAGCTACATTTTTGAAGAAAGTAATAGAAAGTCCAACAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCCTCCAGCTACATTTTTGAAGAAAGTAATAGAAAGTCCAACAA  991

seq1  TAGTGAACTTTGGTCCCTGGTGTGGGCAGTGGCCAACTCAACGGCAACTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAACTTTGGTCCCTGGTGTGGGCAGTGGCCAACTCAACGGCAACTG  1041

seq1  ATCCCGCCTCGCTTTTCAGAGGACTTTTGATGCTTTCGATGAGGGCACCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGCCTCGCTTTTCAGAGGACTTTTGATGCTTTCGATGAGGGCACCA  1091

seq1  CATGACTTCTGGTGTGCAGAGGTTGGATTAAACAGGGAGGTCAGACACCT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTTCTGGTGTGCAGAGGTTGGATTAAACAGGGAGGTCAGACACCT  1141

seq1  AAACTATAAATGGAAAGTGTTCATGCGATTTGAATTC  1183
      |||||||||||||||||||||||||||||||||||||
seq2  AAACTATAAATGGAAAGTGTTCATGCGATTTGAATTC  1178

seq1: chr3_101548710_101549358
seq2: B6Ng01-075I20.g_68_718

seq1  GAATTCAAGTTTAAAAAATTATAGTTTCCTTTTGGGGGGTGAGGGGGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTTAAAAAATTATAGTTTCCTTTTGGGGGGTGAGGGGGATG  50

seq1  CAGTTGGAGAGATGGCTCAGTGGTGAGAGCCCTTGCTGCTCTTCCAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGAGAGATGGCTCAGTGGTGAGAGCCCTTGCTGCTCTTCCAGAGG  100

seq1  ACCTGAGTTTGGTTCCCAGCAGCCATGTCAGCCTGCTCACAACTTCACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGTTTGGTTCCCAGCAGCCATGTCAGCCTGCTCACAACTTCACCT  150

seq1  CCAGGAGCTCCAGCGCCCACTTCTGCCTCTGAGGGACCTGCACTCATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGCTCCAGCGCCCACTTCTGCCTCTGAGGGACCTGCACTCATATG  200

seq1  CAAACACTCGTACACACAAATATTTATTTGTTTTTTTTACATCTTTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACTCGTACACACAAATATTTATTTGTTTTTTTTACATCTTTACAG  250

seq1  TTTTTTACATTTTAAATATTTTTCTTTAAAACTAAAAAATAATTATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACATTTTAAATATTTTTCTTTAAAACTAAAAAATAATTATTTTA  300

seq1  TATATGTATATGAATGTTTTGCCTGCATGTTTGTCTGTTGTTCAAGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATATGAATGTTTTGCCTGCATGTTTGTCTGTTGTTCAAGTGAT  350

seq1  GTCTGCTGCCCATGGAGGCCAGAAGAGGACACTCGATCTCCAGATCAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTGCCCATGGAGGCCAGAAGAGGACACTCGATCTCCAGATCAGGA  400

seq1  GTTACAGATGGTTGGGAACAGACATGTTGTGCTGGCTGGAATGGAGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGATGGTTGGGAACAGACATGTTGTGCTGGCTGGAATGGAGCCTG  450

seq1  GGTCCTCTGAAAAACAACCAGTAATTTCAACCACTGAGCCACCTCTCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCTGAAAAACAACCAGTAATTTCAACCACTGAGCCACCTCTCTAC  500

seq1  CCCCTTAAGTGTTTACATGTGCATATATATATATGCATATATATAATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTAAGTGTTTACATGTGCATATATATATATGCATATATATAATGTA  550

seq1  TTTTAATCATATTTTCTCCCATTACCCATTCTTCTCTC-TTACTCCAGTC  599
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTTAATCATATTTTCTCCCATTACCCATTCTTCTCTCTTTACTCCAGTC  600

seq1  -TTTTCTCTTTCCTCCCCCTCCTCCCTGTCCTCCTCCTCTTTCCTCCCCC  648
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCTTTCCTCCCCCTCCTCCCTGTCCTCCTCCTCTTTCCTCCCCC  650

seq1  T  649
      |
seq2  T  651