BAC Information

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BAC

Clone NameB6Ng01-075M09
Chromosome3 (Build37)
Map Location 109,624,010 - 109,781,856
singlet/doubletdoublet
Overlap geneNtng1
Upstream geneStxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
Downstream geneLOC100043181, LOC100043183, Prmt6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075M09.bB6Ng01-075M09.g
ACCDH892235DH892236
length1,2091,164
definitionDH892235|Mus musculus domesticus DNA, BAC clone: B6Ng01-075M09, 5' end.DH892236|Mus musculus domesticus DNA, BAC clone: B6Ng01-075M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,780,622 - 109,781,856)(109,624,010 - 109,625,184)
sequence
gaattcaaaggaatcacagagttattcagaaacataaaacataaagttgt
gctaactgggaagccgaaaccctcaacaagttgtaaatagcaaacatatg
tctttacatgagttagatcagaaagttatttacaacatattttgaaatat
tttcttcattcttccccccccccaaataaattagagatagtttattaaaa
gaatgtcatcttggggctagaaagatgactcagcagttaagagtgctggt
tgttcttactaggtttgattcttggcacttacaaggtagcttacacccat
ctgcaagtgcagtctaaaggaatctgataccctttctggcttccacgggc
accatgcatggaagtgttgtatacacatacaggcaaaaatacctacgcac
ataaacaaactttaaaaattattaaataataaagtctgttttcaagtcat
tacaacttctttaattagatgctgcaacgaccataaaagtcacacagccc
ttggcaaactaaggccatgttctttgtagcattagcatctccaaaacttt
ctactgcttataattgttttcaaaaatgtagtaactctcattctaacttg
ctgtagtatagagaaggcaaaatggtatagatagattcttgggataaatc
ttgaggacatttggtgtgtgaagccagagtctgcccttgcctgtcttgct
gggaagacaatggtgagaagcactctctatgagtcatggctataccagtg
gctaatgactgtgtccttcagcactgtgttataaagcaggaacagtactc
tgtcacagattacaacaatgagagaaggatacacagtaaaagggtgtata
atacttgcaatcagccaggcacttatgaagaacttattgacagctcttac
acatgtgtggagcaatgagttgtgcacagacagcctggtcccgagttgaa
gaacaggcctggaactggtgaccctagagtcagaagtgtttggctttgcc
tctgggcctggctcctgttgtagcttatggccttccacagcccgcctctc
ccacttccccttgcgaggaggtggtgtgcatcagtcacctagcatgccca
gctcctggtatctgtctgacttccaccccacagttactgcacagcagtag
tctctttccccttcgtactgcacggtcagaatgcaagccatataaaggag
cggcttgcc
gaattcaggaattgcaggttttgaatccatttagtacaaaatcctatact
gagaatattctgaaccactcagtctcaccaagctagctgtgtcagtattt
gcctctcatggcttccctgaatggagccattagcatgtggagagttccag
cacttcccacagccagcataatccctgacaccctagcctcatcactcagg
ggtggccccaggtctctgatatggtagaggtaggtgggccttgtctgaca
actccaaatcaaaggtaaatatcagggaaaacaagaagtatagctggaga
gcaacagctcttagcatgactgctgaatcaggaggaatttctcaactggg
ggcagctctgagctttctcttctagctgggaaaatgaaccttgttcccct
ggaggagactgagcatatttgtaatgcttatgcattgccactttctatct
tctgttttcctaatattttcccttttcgattacctctgagaggctcggga
atgtctgtttaaagagcactgtttccccacccagagaatctggatagcag
gagtagcaagagccctccttgaacggtatcgaccgttcatcattcttctg
tgtgtggtactcagcaagggaaatgatgctaacactgaagttagtgggaa
ggaaattaaaagcttggacccaatgagtcattcactttattgacaaaatg
aaacttttggtgatagagataaaagagttaaataagtagaatctgctgtc
gaggtctgtaaatgctctcgggcatgacagacatatccacatttaggtga
caagcttcctgtcaacagattcaacatgtaaggtcatctggtgaaatgtg
aactggacattttaatgtaacacggcaaataggaagaggcagcaaccaga
ggcaattgaaaaattacagttaggttcaaggtatttgtctgggggaggtg
tatcttcatctcacaggagcaattggaaacatcatcctaatagctcctga
tcacaagttgtcaggcctgcagaaataatctcaatagataaaaaagaatg
aaagaaaagaaagaattaaaactcctgagttacggtagcgaagaatgggg
aatcgaagttatctatagaatacgggagattatactctgaatgctgactc
tcaaaggaattaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_109780622_109781856
seq2: B6Ng01-075M09.b_47_1255 (reverse)

seq1  GGCAAGCAGCTCCTTTTATAGTGGGCTGGGCCATCCTGACTGTTGCCAGG  50
      ||||||| ||||| ||||||   |||| |  ||| ||||| ||   ||| 
seq2  GGCAAGCCGCTCC-TTTATA--TGGCTTG--CATTCTGACCGT--GCAG-  42

seq1  TTACTGAGGGGGAAGAGCATACTTGGCTGTTGCCAGGTTAACTGTGGGGG  100
       |||  ||||| |||||  ||||  |||||   |||  ||||||| ||||
seq2  -TACGAAGGGGAAAGAGACTACT--GCTGT--GCAG--TAACTGT-GGGG  84

seq1  TGGAGTTCAGACAGAATACCAGGAGCTTGGGGCATTGCCTAGGTGACTGA  150
      ||||  |||||||| ||||||||||||  ||||||   ||||||||||||
seq2  TGGAAGTCAGACAG-ATACCAGGAGCT--GGGCAT--GCTAGGTGACTGA  129

seq1  TGGCCACACACCTCTCTGCAGGGGGAGTGGGGAGAGGGCGGGCTGTGGAA  200
      ||  ||| ||||||   ||| |||||   |||||| ||||||||||||||
seq2  TGCACAC-CACCTCCTCGCAAGGGGAAGTGGGAGA-GGCGGGCTGTGGAA  177

seq1  GGCCAT-AGCTACAACAGGAGCCAGGGCCCCAGGAGGCATAGCCAAACAC  249
      |||||| |||||||||||||||||||  |||| |||||| ||||||||| 
seq2  GGCCATAAGCTACAACAGGAGCCAGG--CCCA-GAGGCAAAGCCAAACA-  223

seq1  CTTCTGACTCTTAGGGTCACCAGTTCCAGGCCTGTTC-TCAACTCGGGAC  298
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  CTTCTGACTC-TAGGGTCACCAGTTCCAGGCCTGTTCTTCAACTCGGGAC  272

seq1  CAGGCTGTCTGTGCACAACTCATTGCTCCACACATGTGTAAGAGCTGTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGTCTGTGCACAACTCATTGCTCCACACATGTGTAAGAGCTGTCA  322

seq1  ATAAGTTCTTCATAAGTGCCTGGCTGATTGCAAGTATTATACACCCTTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTCTTCATAAGTGCCTGGCTGATTGCAAGTATTATACACCCTTTT  372

seq1  ACTGTGTATCCTTCTCTCATTGTTGTAATCTGTGACAGAGTACTGTTCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTATCCTTCTCTCATTGTTGTAATCTGTGACAGAGTACTGTTCCT  422

seq1  GCTTTATAACACAGTGCTGAAGGACACAGTCATTAGCCACTGGTATAGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATAACACAGTGCTGAAGGACACAGTCATTAGCCACTGGTATAGCC  472

seq1  ATGACTCATAGAGAGTGCTTCTCACCATTGTCTTCCCAGCAAGACAGGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCATAGAGAGTGCTTCTCACCATTGTCTTCCCAGCAAGACAGGCA  522

seq1  AGGGCAGACTCTGGCTTCACACACCAAATGTCCTCAAGATTTATCCCAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGACTCTGGCTTCACACACCAAATGTCCTCAAGATTTATCCCAAG  572

seq1  AATCTATCTATACCATTTTGCCTTCTCTATACTACAGCAAGTTAGAATGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATCTATACCATTTTGCCTTCTCTATACTACAGCAAGTTAGAATGA  622

seq1  GAGTTACTACATTTTTGAAAACAATTATAAGCAGTAGAAAGTTTTGGAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACTACATTTTTGAAAACAATTATAAGCAGTAGAAAGTTTTGGAGA  672

seq1  TGCTAATGCTACAAAGAACATGGCCTTAGTTTGCCAAGGGCTGTGTGACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATGCTACAAAGAACATGGCCTTAGTTTGCCAAGGGCTGTGTGACT  722

seq1  TTTATGGTCGTTGCAGCATCTAATTAAAGAAGTTGTAATGACTTGAAAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTCGTTGCAGCATCTAATTAAAGAAGTTGTAATGACTTGAAAAC  772

seq1  AGACTTTATTATTTAATAATTTTTAAAGTTTGTTTATGTGCGTAGGTATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTATTATTTAATAATTTTTAAAGTTTGTTTATGTGCGTAGGTATT  822

seq1  TTTGCCTGTATGTGTATACAACACTTCCATGCATGGTGCCCGTGGAAGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGTATGTGTATACAACACTTCCATGCATGGTGCCCGTGGAAGCC  872

seq1  AGAAAGGGTATCAGATTCCTTTAGACTGCACTTGCAGATGGGTGTAAGCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGTATCAGATTCCTTTAGACTGCACTTGCAGATGGGTGTAAGCT  922

seq1  ACCTTGTAAGTGCCAAGAATCAAACCTAGTAAGAACAACCAGCACTCTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTAAGTGCCAAGAATCAAACCTAGTAAGAACAACCAGCACTCTTA  972

seq1  ACTGCTGAGTCATCTTTCTAGCCCCAAGATGACATTCTTTTAATAAACTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGAGTCATCTTTCTAGCCCCAAGATGACATTCTTTTAATAAACTA  1022

seq1  TCTCTAATTTATTTGGGGGGGGGGAAGAATGAAGAAAATATTTCAAAATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAATTTATTTGGGGGGGGGGAAGAATGAAGAAAATATTTCAAAATA  1072

seq1  TGTTGTAAATAACTTTCTGATCTAACTCATGTAAAGACATATGTTTGCTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAAATAACTTTCTGATCTAACTCATGTAAAGACATATGTTTGCTA  1122

seq1  TTTACAACTTGTTGAGGGTTTCGGCTTCCCAGTTAGCACAACTTTATGTT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAACTTGTTGAGGGTTTCGGCTTCCCAGTTAGCACAACTTTATGTT  1172

seq1  TTATGTTTCTGAATAACTCTGTGATTCCTTTGAATTC  1235
      |||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTCTGAATAACTCTGTGATTCCTTTGAATTC  1209

seq1: chr3_109624010_109625184
seq2: B6Ng01-075M09.g_70_1233

seq1  GAATTCAGGAATTGCAGGTTTTGAATCCATTTAGTACAAAATCCTATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAATTGCAGGTTTTGAATCCATTTAGTACAAAATCCTATACT  50

seq1  GAGAATATTCTGAACCACTCAGTCTCACCAAGCTAGCTGTGTCAGTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATTCTGAACCACTCAGTCTCACCAAGCTAGCTGTGTCAGTATTT  100

seq1  GCCTCTCATGGCTTCCCTGAATGGAGCCATTAGCATGTGGAGAGTTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCATGGCTTCCCTGAATGGAGCCATTAGCATGTGGAGAGTTCCAG  150

seq1  CACTTCCCACAGCCAGCATAATCCCTGACACCCTAGCCTCATCACTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCCACAGCCAGCATAATCCCTGACACCCTAGCCTCATCACTCAGG  200

seq1  GGTGGCCCCAGGTCTCTGATATGGTAGAGGTAGGTGGGCCTTGTCTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCCCAGGTCTCTGATATGGTAGAGGTAGGTGGGCCTTGTCTGACA  250

seq1  ACTCCAAATCAAAGGTAAATATCAGGGAAAACAAGAAGTATAGCTGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAATCAAAGGTAAATATCAGGGAAAACAAGAAGTATAGCTGGAGA  300

seq1  GCAACAGCTCTTAGCATGACTGCTGAATCAGGAGGAATTTCTCAACTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGCTCTTAGCATGACTGCTGAATCAGGAGGAATTTCTCAACTGGG  350

seq1  GGCAGCTCTGAGCTTTCTCTTCTAGCTGGGAAAATGAACCTTGTTCCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTCTGAGCTTTCTCTTCTAGCTGGGAAAATGAACCTTGTTCCCCT  400

seq1  GGAGGAGACTGAGCATATTTGTAATGCTTATGCATTGCCACTTTCTATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGACTGAGCATATTTGTAATGCTTATGCATTGCCACTTTCTATCT  450

seq1  TCTGTTTTCCTAATATTTTCCCTTTTCGATTACCTCTGAGAGGCTCGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCCTAATATTTTCCCTTTTCGATTACCTCTGAGAGGCTCGGGA  500

seq1  ATGTCTGTTTAAAGAGCACTGTTTCCCCACCCAGAGAATCTGGATAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTTTAAAGAGCACTGTTTCCCCACCCAGAGAATCTGGATAGCAG  550

seq1  GAGTAGCAAGAGCCCTCCTTGAACGGTATCGACCGTTCATCATTCTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCAAGAGCCCTCCTTGAACGGTATCGACCGTTCATCATTCTTCTG  600

seq1  TGTGTGGTACTCAGCAAGGGAAATGATGCTAACACTGAAGTTAGTGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTACTCAGCAAGGGAAATGATGCTAACACTGAAGTTAGTGGGAA  650

seq1  GGAAATTAAAAGCTTGGACCCAATGAGTCATTCACTTTATTGACAAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTAAAAGCTTGGACCCAATGAGTCATTCACTTTATTGACAAAATG  700

seq1  AAACTTTTGGTGATAGAGATAAAAGAGTTAAATAAGTAGAATCTGCTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTGGTGATAGAGATAAAAGAGTTAAATAAGTAGAATCTGCTGTC  750

seq1  GAGGTCTGTAAATGCTCTCGGGCATGACAGACATATCCACATTTAGGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTGTAAATGCTCTCGGGCATGACAGACATATCCACATTTAGGTGA  800

seq1  CAAGCTTCCTGTCAACAGATTCAACATGTAAGGTCATCTGGTGAAATGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTCCTGTCAACAGATTCAACATGTAAGGTCATCTGGTGAAATGTG  850

seq1  AACTGGACATTTTAATGTAACACGGCAAATAGGAAGAGGCAGCAACCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGACATTTTAATGTAACACGGCAAATAGGAAGAGGCAGCAACCAGA  900

seq1  GGCAATTGAAAAATTACAAGTTAGGTTCAAGGTATTTGTCT-GGGGAGGT  949
      ||||||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  GGCAATTGAAAAATTAC-AGTTAGGTTCAAGGTATTTGTCTGGGGGAGGT  949

seq1  GTAATCTTCATCTCACAGGAGCAATTGGAAACATCATCCTAATAGCTCCA  999
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GT-ATCTTCATCTCACAGGAGCAATTGGAAACATCATCCTAATAGCTCC-  997

seq1  TGATCACAAGTTGTCAGGCCTGCAGAAATTAATCTCCATAGAATAAAAAA  1049
      |||||||||||||||||||||||||||| ||||||| |||| ||||||||
seq2  TGATCACAAGTTGTCAGGCCTGCAGAAA-TAATCTCAATAG-ATAAAAAA  1045

seq1  GAATGAAAGAAAAGGAAGAAATAAAAACTCCTGAGTTACGGTAGCAGAAG  1099
      |||||||||||||| ||| ||| |||||||||||||||||||||| ||||
seq2  GAATGAAAGAAAAGAAAG-AATTAAAACTCCTGAGTTACGGTAGC-GAAG  1093

seq1  AATTGGGATCAGAAGTTATCTATAGAATAAAGGAAGATTTATTAATCCAT  1149
      ||| ||||   ||||||||||||||||| | || |||||   || ||  |
seq2  AATGGGGAATCGAAGTTATCTATAGAAT-ACGGGAGATT--ATACTC--T  1138

seq1  GATTGCTGACTCTCAAAGGATTTAAA  1175
      || ||||||||||||||||| |||||
seq2  GAATGCTGACTCTCAAAGGAATTAAA  1164