BAC Information

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BAC

Clone NameB6Ng01-076A19
Chromosome3 (Build37)
Map Location 145,473,757 - 145,575,799
singlet/doubletdoublet
Overlap geneDdah1, LOC100040331
Upstream geneClca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61
Downstream geneBcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076A19.bB6Ng01-076A19.g
ACCDH892431DH892432
length1,1871,181
definitionDH892431|Mus musculus domesticus DNA, BAC clone: B6Ng01-076A19, 5' end.DH892432|Mus musculus domesticus DNA, BAC clone: B6Ng01-076A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,473,757 - 145,474,947)(145,574,629 - 145,575,799)
sequence
gaattctgtcaaacctgtgcgtgtgtgtgcttcaaatattcgtcaaatat
tcgcactagttgtagaatgacttcttaacttgttaaaagcagcagaagga
agagactagctatgagttttgagatagggaaattgctttgtatcaataga
tttgctttcattgtcaacaaatacattgctacaatctagtaaattttgcc
aagagtacattgtgtatccattcgagagctatcacgcggggaaactgtat
tttacatcttctactgagtgagttatttttctggtaaacaacttgataca
aaagagactgaacattcattgattttaatagctatgctgaattacagatt
aatggtccaaaataaaatataaactgatttaatacataattcagcatgag
ggagggaagtagatctttttccaactgagtacagacctgattcttttctt
ctgaggataacttatttccccgttaataactgtaagactggcctgaacca
cagccagcctggggaaccctttgttcagaactgtttaatgctgtattgac
taaggagcaacttgggagttgaaaaacagatttcatatttcagattctgg
cttgagagtatttttaaagtagagcgctaggagttccagtcgacagactg
cgaaagctcctggccactgtgcctggaaatgagattcctaaagagccaag
ctcaaggatgctgaggcgggcctcacaggagcaagccttcgagcacacag
caggtacagtgtcttgcacgtcttgatgactcttcgaacatattccttgg
atgctacttgaatttaacactccccctcactgccccctgaaatataattt
ggcttggtaaacttaggtgtttacatgcccacggaaaaatttcctcagat
ttattctcattacttaccagattgaacaccaacagaccctacctaacagg
ggacagaggagctctcagaccacagccacacacacacacacacatcctgc
tatcactaggagcagacactccatcatgggtatgtaccccagctctccta
agagatggcaactgttgggggttaagccattttatgagcaaaaagatgag
agttctgaagaatattttttatagtttgtttttccagagtgaacctttag
ttgtgtgaatttcactcagaaattcaccacaggaatt
gaattcatgttctcatgccggcctaacaaacgctttacccatggagccgt
ctccccagcctgcatggggaagttttcaggaatagaatcgaaccgctttg
actactgtggtaactaatcaataaccacatctggctagcaaatatttgga
aagtagttattcagaactgagttgcattccaaatgtcaaatagacactgg
agtcccagcacagtatcacagagaaagggaacaaaacacctcactgttaa
ctttataacgaccacacaacctcattatattttagatgtgcagtgctaaa
taccgtggtgaaatcaacttcacctggctcatttattattttaagtgtgg
ctactaaaagtgaaatgaccgaaacctacagagttctgactcagtcactg
agacaggcagaggtcatgtgagctgcctttgtgacccacacaaagtgttt
aaggatagatttggtcttgttccgttaaaaatctttggactcagataggt
gcgttccccatgttgttttctcagcccgtgaaaccggtgattgaggaagg
tgggggccgtggacaggattcctgcagcatttggcttctctaggcttata
gaggcattcaacagttctctgtcattgacctgtagtctctgccttagctt
cactaacaccagaaataggtgtttgatgactgtagtgacccttcaaatat
ttcagagtgtggccccttatagtttaaaatcctggcgctaggtgacaatg
ggttaatgacagggaatggaagagccacatttgaaatcaaatgacaataa
gcttctcgactatcagagcgtgaactgcctaccatctgtccagcaaaaca
aagatggtcactgtcttcttgagtggtctcagccaaatatccaccttctc
tgaattctgcactatcacacccaagtaatgtgaccagtcccttcctagag
agtcctttttgccctgttcacaagtgcctgatggaatgtccagaagaaac
cccattgttctgctggcacatccgtgggcatcttgaaaggtgtgcttctc
attgtcccatcagaaatgccttgtctctacttaacaccaggtgacagctg
ggacaccttctaggaaagtctcccttcctcaggtcccacaatttcctttg
agtccttctctttgagtgctgtgaaagcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145473757_145474947
seq2: B6Ng01-076A19.b_48_1234

seq1  GAATTCTGTCAAACCTGTGCGTGTGTGTGCTTCAAATATTCGTCAAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCAAACCTGTGCGTGTGTGTGCTTCAAATATTCGTCAAATAT  50

seq1  TCGCACTAGTTGTAGAATGACTTCTTAACTTGTTAAAAGCAGCAGAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCACTAGTTGTAGAATGACTTCTTAACTTGTTAAAAGCAGCAGAAGGA  100

seq1  AGAGACTAGCTATGAGTTTTGAGATAGGGAAATTGCTTTGTATCAATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTAGCTATGAGTTTTGAGATAGGGAAATTGCTTTGTATCAATAGA  150

seq1  TTTGCTTTCATTGTCAACAAATACATTGCTACAATCTAGTAAATTTTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTCATTGTCAACAAATACATTGCTACAATCTAGTAAATTTTGCC  200

seq1  AAGAGTACATTGTGTATCCATTCGAGAGCTATCACGCGGGGAAACTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTACATTGTGTATCCATTCGAGAGCTATCACGCGGGGAAACTGTAT  250

seq1  TTTACATCTTCTACTGAGTGAGTTATTTTTCTGGTAAACAACTTGATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATCTTCTACTGAGTGAGTTATTTTTCTGGTAAACAACTTGATACA  300

seq1  AAAGAGACTGAACATTCATTGATTTTAATAGCTATGCTGAATTACAGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGACTGAACATTCATTGATTTTAATAGCTATGCTGAATTACAGATT  350

seq1  AATGGTCCAAAATAAAATATAAACTGATTTAATACATAATTCAGCATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCCAAAATAAAATATAAACTGATTTAATACATAATTCAGCATGAG  400

seq1  GGAGGGAAGTAGATCTTTTTCCAACTGAGTACAGACCTGATTCTTTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAAGTAGATCTTTTTCCAACTGAGTACAGACCTGATTCTTTTCTT  450

seq1  CTGAGGATAACTTATTTCCCCGTTAATAACTGTAAGACTGGCCTGAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGATAACTTATTTCCCCGTTAATAACTGTAAGACTGGCCTGAACCA  500

seq1  CAGCCAGCCTGGGGAACCCTTTGTTCAGAACTGTTTAATGCTGTATTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGCCTGGGGAACCCTTTGTTCAGAACTGTTTAATGCTGTATTGAC  550

seq1  TAAGGAGCAACTTGGGAGTTGAAAAACAGATTTCATATTTCAGATTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGCAACTTGGGAGTTGAAAAACAGATTTCATATTTCAGATTCTGG  600

seq1  CTTGAGAGTATTTTTAAAGTAGAGCGCTAGGAGTTCCAGTCGACAGACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAGTATTTTTAAAGTAGAGCGCTAGGAGTTCCAGTCGACAGACTG  650

seq1  CGAAAGCTCCTGGCCACTGTGCCTGGAAATGAGATTCCTAAAGAGCCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGCTCCTGGCCACTGTGCCTGGAAATGAGATTCCTAAAGAGCCAAG  700

seq1  CTCAAGGATGCTGAGGCGGGCCTCACAGGAGCAAGCCTTCGAGCACACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGATGCTGAGGCGGGCCTCACAGGAGCAAGCCTTCGAGCACACAG  750

seq1  CAGGTACAGTGTCTTGCACGTCTTGATGACTCTTCGAACATATTCCTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACAGTGTCTTGCACGTCTTGATGACTCTTCGAACATATTCCTTGG  800

seq1  ATGCTACTTGAATTTAACACTCCCCCTCACTGCCCCCTGAAATATAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACTTGAATTTAACACTCCCCCTCACTGCCCCCTGAAATATAATTT  850

seq1  GGCTTGGTAAACTTAGGTGTTTACATGCCCACGGAAAAATTTCCTCAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGTAAACTTAGGTGTTTACATGCCCACGGAAAAATTTCCTCAGAT  900

seq1  TTATTCTCATTACTTACCAGATTGAACACCAACAGACCCTACCTAACAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCATTACTTACCAGATTGAACACCAACAGACCCTACCTAACAGG  950

seq1  GGACAGAGGAGCTCTCAGACCACAGCCAACACACACACACACACATCCTG  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGACAGAGGAGCTCTCAGACCACAGCC-ACACACACACACACACATCCTG  999

seq1  CTTATCACTAGGAGCAGACACTCCATCATGGGTATGTA-CACAGCTCTCT  1049
      | |||||||||||||||||||||||||||||||||||| | |||||||| 
seq2  C-TATCACTAGGAGCAGACACTCCATCATGGGTATGTACCCCAGCTCTCC  1048

seq1  TAAGAGGATGGCAACCTGTT-GGGGTTAAGCCAATATTATTGGAGCAAAA  1098
      ||||| |||||||| ||||| ||||||||||| || ||||  ||||||||
seq2  TAAGA-GATGGCAA-CTGTTGGGGGTTAAGCC-ATTTTAT--GAGCAAAA  1093

seq1  AGATGAGAGTTCTG-AGAATATTTTTATTAGTTATGTTTTCCAGAAGTGA  1147
      |||||||||||||| |||||||||||  |||||   |||||||| |||||
seq2  AGATGAGAGTTCTGAAGAATATTTTTTATAGTTTGTTTTTCCAG-AGTGA  1142

seq1  AACTTTAGGTTGTGTGAATTTCA-TCAGAAATCCA-CACAGGAATT  1191
      | ||||| ||||||||||||||| |||||||| || ||||||||||
seq2  ACCTTTA-GTTGTGTGAATTTCACTCAGAAATTCACCACAGGAATT  1187

seq1: chr3_145574629_145575799
seq2: B6Ng01-076A19.g_67_1247 (reverse)

seq1  CTTTCTTT--CAACACTCAA--AGAAAGACTCAAAGGAATGTG-GGGACC  45
      ||| ||||  || |||||||  |||| ||||||||||||  || ||||||
seq2  CTTGCTTTCACAGCACTCAAAGAGAAGGACTCAAAGGAAATTGTGGGACC  50

seq1  TGAG--AGGGGGACCTTCCTAGAAGTGGTCCCAGCCTTGTCACCT-GTGT  92
      ||||  |||| ||| ||||||||||  ||||||||  |||||||| ||||
seq2  TGAGGAAGGGAGACTTTCCTAGAAGGTGTCCCAGC--TGTCACCTGGTGT  98

seq1  TAAGTAGAGGACAGGCATTTCTGATGGGACAATGAGAAGCACACTTTTC-  141
      |||||||||   |||||||||||||||||||||||||||||||| |||| 
seq2  TAAGTAGAGACAAGGCATTTCTGATGGGACAATGAGAAGCACACCTTTCA  148

seq1  AGATGCCCACGGATGTGCCAGCAGA--CATGGGGTTTTCTCTGGACATTC  189
      |||||||||||||||||||||||||   |||||||||  |||||||||||
seq2  AGATGCCCACGGATGTGCCAGCAGAACAATGGGGTTTCTTCTGGACATTC  198

seq1  CATCAGGCACTTGTGAACAGGGCAAAAAGGACTCTCTAGGAA-GGACTGG  238
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATCAGGCACTTGTGAACAGGGCAAAAAGGACTCTCTAGGAAGGGACTGG  248

seq1  TCACATTACTTGGGTGTGATAGTGCAGAATTCAGAGAAGGTGGATATTTG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTACTTGGGTGTGATAGTGCAGAATTCAGAGAAGGTGGATATTTG  298

seq1  GCTGAGACCACTCAAGAAGACAGTGACCATCTTTGTTTTGCTGGACAGAT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGACCACTCAAGAAGACAGTGACCATCTTTGTTTTGCTGGACAGAT  348

seq1  GGTAGGCAGTTCACGCTCTGATAGTCGAGAAGCTTATTGTCATTTGATTT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGCAGTTCACGCTCTGATAGTCGAGAAGCTTATTGTCATTTGATTT  398

seq1  CAAATGTGGCTCTTCCATTCCCTGTCATTAACCCATTGTCACCTAGCGCC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTGGCTCTTCCATTCCCTGTCATTAACCCATTGTCACCTAGCGCC  448

seq1  AGGATTTTAAACTATAAGGGGCCACACTCTGAAATATTTGAAGGGTCACT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTAAACTATAAGGGGCCACACTCTGAAATATTTGAAGGGTCACT  498

seq1  ACAGTCATCAAACACCTATTTCTGGTGTTAGTGAAGCTAAGGCAGAGACT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCATCAAACACCTATTTCTGGTGTTAGTGAAGCTAAGGCAGAGACT  548

seq1  ACAGGTCAATGACAGAGAACTGTTGAATGCCTCTATAAGCCTAGAGAAGC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCAATGACAGAGAACTGTTGAATGCCTCTATAAGCCTAGAGAAGC  598

seq1  CAAATGCTGCAGGAATCCTGTCCACGGCCCCCACCTTCCTCAATCACCGG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTGCAGGAATCCTGTCCACGGCCCCCACCTTCCTCAATCACCGG  648

seq1  TTTCACGGGCTGAGAAAACAACATGGGGAACGCACCTATCTGAGTCCAAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACGGGCTGAGAAAACAACATGGGGAACGCACCTATCTGAGTCCAAA  698

seq1  GATTTTTAACGGAACAAGACCAAATCTATCCTTAAACACTTTGTGTGGGT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTAACGGAACAAGACCAAATCTATCCTTAAACACTTTGTGTGGGT  748

seq1  CACAAAGGCAGCTCACATGACCTCTGCCTGTCTCAGTGACTGAGTCAGAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGGCAGCTCACATGACCTCTGCCTGTCTCAGTGACTGAGTCAGAA  798

seq1  CTCTGTAGGTTTCGGTCATTTCACTTTTAGTAGCCACACTTAAAATAATA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGGTTTCGGTCATTTCACTTTTAGTAGCCACACTTAAAATAATA  848

seq1  AATGAGCCAGGTGAAGTTGATTTCACCACGGTATTTAGCACTGCACATCT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCCAGGTGAAGTTGATTTCACCACGGTATTTAGCACTGCACATCT  898

seq1  AAAATATAATGAGGTTGTGTGGTCGTTATAAAGTTAACAGTGAGGTGTTT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAATGAGGTTGTGTGGTCGTTATAAAGTTAACAGTGAGGTGTTT  948

seq1  TGTTCCCTTTCTCTGTGATACTGTGCTGGGACTCCAGTGTCTATTTGACA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCTTTCTCTGTGATACTGTGCTGGGACTCCAGTGTCTATTTGACA  998

seq1  TTTGGAATGCAACTCAGTTCTGAATAACTACTTTCCAAATATTTGCTAGC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATGCAACTCAGTTCTGAATAACTACTTTCCAAATATTTGCTAGC  1048

seq1  CAGATGTGGTTATTGATTAGTTACCACAGTAGTCAAAGCGGTTCGATTCT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTGGTTATTGATTAGTTACCACAGTAGTCAAAGCGGTTCGATTCT  1098

seq1  ATTCCTGAAAACTTCCCCATGCAGGCTGGGGAGACGGCTCCATGGGTAAA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGAAAACTTCCCCATGCAGGCTGGGGAGACGGCTCCATGGGTAAA  1148

seq1  GCGTTTGTTAGGCCGGCATGAGAACATGAATTC  1171
      |||||||||||||||||||||||||||||||||
seq2  GCGTTTGTTAGGCCGGCATGAGAACATGAATTC  1181