BAC Information

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BAC

Clone NameB6Ng01-076B21
Chromosome3 (Build37)
Map Location 125,987,437 - 125,988,624
singlet/doubletsinglet
Overlap genenone
Upstream geneNdst4, Ugt8a
Downstream geneArsj, Camk2d, Ank2, LOC100043749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076B21.bB6Ng01-076B21.g
ACCDH892478DH892479
length1,1881,161
definitionDH892478|Mus musculus domesticus DNA, BAC clone: B6Ng01-076B21, 5' end.DH892479|Mus musculus domesticus DNA, BAC clone: B6Ng01-076B21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccctctaattgcattttaaaattaactagtaatgaaaggcgaaaa
tgaatacagcgcacaagagacagacaaaaaataaaaactagcaggattca
tctaaaattacacagaaaatataaagactaagggaaatctaatggattat
atgaataaaatattatatagcacaatctggagcaagtggttcatgacaca
gtgagtaatatttgatggaatttagatctctgtaggaaaggaaatgcatt
ttttactaggcctatttttcccttcccactcttgttagctcatttataaa
gtgatgaaaagaaaccatcccaagtgctgctaaatgattgaagacgactt
cagggacaccgtgagcttgtgctcagccccagaataatagacaaatgcca
gaaggagccttgagagagcagtcagggaagctaccacaagacataaagaa
gcagttaaaagacactgccagtgtctgcagcaaaactattgctctcaaaa
gtggagcatggaaagaggggatcctctctgggagacattacagatatttc
ttcaaagcattagcttcaacaaatgtattcaatgaatgagggacttagaa
tttctaactttctagctgttggtaacacactaaaatgctgtttcacgttt
aacatctactgatccttttatgtccttaattatgcttcctgttctctttt
cagcagcttctgtaagagaatcctgacacatttcattcaagatttgggag
gggaagttcaatagtcacactggaaaagctacagctagtttagtataatc
cctacacagattcatttgttacacagtatttctaggaggaaatgtgtaaa
aatggataagaaagggccatttattaagtatatattttttatttgtttca
ttgtttttggaagaggatttgataataatatttgaaacgttctctgagtt
tgaaataacacaatttaatatattttcattaattatagtcatcattttat
tggacaaatacatattttaaaacatttacataatgcatatttaaaatata
ttaattcttggttccaagggggtggatgcttcttaaagtcatgatgatgc
taaataaaggcaatatttatttactgattttgggaacatattggtcttaa
gtctcagctctggacttagttatttgcagcttaacacc
gaattctcacccaaggaataccgaatggcagagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaagtgcaaatcaaaacaactctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtagagaaagaggaacactcctccattgttggtg
ggattgcaagcttttacaaccactctggatatcaatctggtggttcctca
gaaaattggacatagtactactggaggattccacaatacctctcctgggc
atatatccagaagatgttccaaccagtaagaaggacacatgctccaccat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacatttacacaatggagtactactcagc
tattaaaaagaatgaatttataaaattcctaggcaaatggatggacctgg
atggcatcatccttcgtggggtacctcaatcacaaaagaactcacatgat
atgtactcactgataagtggatattagcccggaaacttagaatacccaag
atgtaagatacaatttgtgaagcacatgaacctcaggaagaacaaagacc
aaggtttgctcctactttgccccttcttggaaatgggagcaaggcagcca
tggaaggagctacagagacagtttggagctgagatgaaagaatggaccat
ctagagactgccatacctggggatccattccataatcagcctccaaacgc
tgacacttgtgggaagccacttgtgcagttgcagagtggcgctgactact
gttggccaccacgcataagtttggacgaacaaccaatgtgtacatatgca
gtaaagttttttgcaaagagactgcctggcccgggcatgatatgaggctt
tgagagtataaccatcagatgtgagacatacaaatgagtatgatatgagc
tctgtgagtacagagagagagtagccatcttatgaggaatatgcaaatga
gctatgaataccaatctgggtgtgagaacatgctcttctagcctatatag
cggcacagttcttgggctctggtccttttgcctctgcaatcaagcttctc
cgaattaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_125987437_125988624
seq2: B6Ng01-076B21.b_46_1233

seq1  GAATTCCCTCTAATTGCATTTTAAAATTAACTAGTAATGAAAGGCGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCTAATTGCATTTTAAAATTAACTAGTAATGAAAGGCGAAAA  50

seq1  TGAATACAGCGCACAAGAGACAGACAAAAAATAAAAACTAGCAGGATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACAGCGCACAAGAGACAGACAAAAAATAAAAACTAGCAGGATTCA  100

seq1  TCTAAAATTACACAGAAAATATAAAGACTAAGGGAAATCTAATGGATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATTACACAGAAAATATAAAGACTAAGGGAAATCTAATGGATTAT  150

seq1  ATGAATAAAATATTATATAGCACAATCTGGAGCAAGTGGTTCATGACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAAAATATTATATAGCACAATCTGGAGCAAGTGGTTCATGACACA  200

seq1  GTGAGTAATATTTGATGGAATTTAGATCTCTGTAGGAAAGGAAATGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTAATATTTGATGGAATTTAGATCTCTGTAGGAAAGGAAATGCATT  250

seq1  TTTTACTAGGCCTATTTTTCCCTTCCCACTCTTGTTAGCTCATTTATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTAGGCCTATTTTTCCCTTCCCACTCTTGTTAGCTCATTTATAAA  300

seq1  GTGATGAAAAGAAACCATCCCAAGTGCTGCTAAATGATTGAAGACGACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAAAAGAAACCATCCCAAGTGCTGCTAAATGATTGAAGACGACTT  350

seq1  CAGGGACACCGTGAGCTTGTGCTCAGCCCCAGAATAATAGACAAATGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACACCGTGAGCTTGTGCTCAGCCCCAGAATAATAGACAAATGCCA  400

seq1  GAAGGAGCCTTGAGAGAGCAGTCAGGGAAGCTACCACAAGACATAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGCCTTGAGAGAGCAGTCAGGGAAGCTACCACAAGACATAAAGAA  450

seq1  GCAGTTAAAAGACACTGCCAGTGTCTGCAGCAAAACTATTGCTCTCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAAAAGACACTGCCAGTGTCTGCAGCAAAACTATTGCTCTCAAAA  500

seq1  GTGGAGCATGGAAAGAGGGGATCCTCTCTGGGAGACATTACAGATATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCATGGAAAGAGGGGATCCTCTCTGGGAGACATTACAGATATTTC  550

seq1  TTCAAAGCATTAGCTTCAACAAATGTATTCAATGAATGAGGGACTTAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGCATTAGCTTCAACAAATGTATTCAATGAATGAGGGACTTAGAA  600

seq1  TTTCTAACTTTCTAGCTGTTGGTAACACACTAAAATGCTGTTTCACGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAACTTTCTAGCTGTTGGTAACACACTAAAATGCTGTTTCACGTTT  650

seq1  AACATCTACTGATCCTTTTATGTCCTTAATTATGCTTCCTGTTCTCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTACTGATCCTTTTATGTCCTTAATTATGCTTCCTGTTCTCTTTT  700

seq1  CAGCAGCTTCTGTAAGAGAATCCTGACACATTTCATTCAAGATTTGGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCTTCTGTAAGAGAATCCTGACACATTTCATTCAAGATTTGGGAG  750

seq1  GGGAAGTTCAATAGTCACACTGGAAAAGCTACAGCTAGTTTAGTATAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTTCAATAGTCACACTGGAAAAGCTACAGCTAGTTTAGTATAATC  800

seq1  CCTACACAGATTCATTTGTTACACAGTATTTCTAGGAGGAAATGTGTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACAGATTCATTTGTTACACAGTATTTCTAGGAGGAAATGTGTAAA  850

seq1  AATGGATAAGAAAGGGCCATTTATTAAGTATATATTTTTTATTTGTTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATAAGAAAGGGCCATTTATTAAGTATATATTTTTTATTTGTTTCA  900

seq1  TTGTTTTTGGAAGAGGATTTGATAATAATATTTGAAACGTTCTCTGAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGGAAGAGGATTTGATAATAATATTTGAAACGTTCTCTGAGTT  950

seq1  TGAAATAACACAATTTAATATATTTTCATTAATTATAGTCATCATTTTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAACACAATTTAATATATTTTCATTAATTATAGTCATCATTTTAT  1000

seq1  TGGAC-AATACATA-TTTAAAACATTTACATAAATGCATAATTTAAAATA  1048
      ||||| |||||||| |||||||||||||||| ||||||| ||||||||||
seq2  TGGACAAATACATATTTTAAAACATTTACAT-AATGCAT-ATTTAAAATA  1048

seq1  TATTAA-TCTTGGGTCCAAGGTG--TGATGCCTTCTAAAAGTCATTGAAT  1095
      |||||| |||||| ||||||| |   |||| ||||| ||||||||   ||
seq2  TATTAATTCTTGGTTCCAAGGGGGTGGATG-CTTCTTAAAGTCAT--GAT  1095

seq1  GATGCTAAATAAAAGCAATATTTATTTACTGATTCT-GGAAC-TATTGGT  1143
      ||||||||||||| |||||||||||||||||||| | ||||| |||||||
seq2  GATGCTAAATAAAGGCAATATTTATTTACTGATTTTGGGAACATATTGGT  1145

seq1  CTTAGTTCTCCAAGCTCTGGAACTTAGTATAATGCAGC-TAACACC  1188
      ||||  ||||  |||||||| |||||||    |||||| |||||||
seq2  CTTAAGTCTC--AGCTCTGG-ACTTAGTTATTTGCAGCTTAACACC  1188