BAC Information

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BAC

Clone NameB6Ng01-076C16
Chromosome3 (Build37)2 (Build37)
Map Location 21,375,873 - 21,375,99665,554,482 - 65,555,597
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG665094
Downstream geneLOC100040325, 7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076C16.bB6Ng01-076C16.g
ACCDH892513DH892514
length1,0961,115
definitionDH892513|Mus musculus domesticus DNA, BAC clone: B6Ng01-076C16, 5' end.DH892514|Mus musculus domesticus DNA, BAC clone: B6Ng01-076C16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,375,873 - 21,375,996)(65,554,482 - 65,555,597)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaacaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacagcagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgtggatgtggagaaagaggaacactcctctattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtgtggcggttcctca
gaaaattggacatagtactaccggagaatccagcaatacctctcctgggc
atatatccagaagatgcctcaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggaggtcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaattcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagacga
aaggatggaccatctagagtctgccatatccagggatacaccccataatc
agcatccaaacgctgacatcattgcatgcactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccgggacctagcaaac
acagaagtggatgctcccagtcagctaatggatggatcacagggctccca
atggatgagctagagaaagtacccaaggagctaaagggatctgcaaccct
ataggtggaacacattattaattaaccagtacccggagctcttgactcta
gctgcatatgtatcaaaaatgggctagttggcctcactgtagaaag
gaattcacgtatcttccttttaacaaaatcaatccccttctgcatccttc
ccacggctatctggaggttgttcatttcgttatcgtcatctgtggcagcc
aggttgtccgagctgaaagaactgaggagcaaggccaagaagaggttcag
aacctacaaaaaagtggaggaagagcaatcagacaccctgttgtgtccct
tgctttagttgtaagacgtggaattgtcttcatacatcccattaaagaca
aggtctcccagaacacagcaaagaaaagtaaaaacaaacaaatggctggc
tgatagcaaacactactcatactctttttattttgggtttgtttcaaaat
ccctaagctgccatggtatgaaacttctatactaactttatgtcttgggg
aatctagacaagtaaaagaaatagctattttggatgcttgttattttgaa
catgtaatctgtatttagtaggacactgaacacttattgtaatttgattc
atagaactatatatttggatatgatttggcctctgcagcattgcaacctt
tttcaccttagtaacttgctaaattcaattaaaaaatatatgtattgcta
gatcaacactcctaattttgattaagaaaaaaaaaccttgtagatgctac
tagttcatgcaagacttataaatataacaaagtggtataataacaccgct
gttatgttgaattaaaagtgatgtttgtggtatcaccaggaatctccaag
tccatagactaggtaggttactaggaattaggcagtgctggggacatgac
tgtcatcattttttaatcagggttttagtttgacacaaccctcaattatt
caaacacggaatcaaattaaatatagacaggactaaatgcagaggttttt
agttcaaagttgaaacttgcagaagattttagctaaatcccaatgcaaat
gaccgtgactgacgtgtcagtaaagtcaatgagaagaaagtatatggtca
gggccattcttgaaccttctgtcattgcctcccatggctcctgcggcata
ctagggagcctctcagtctcccccactcaagatttactaattacacctta
atatgcctctgactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_21375873_21375996
seq2: B6Ng01-076C16.b_1021_1142 (reverse)

seq1  CTTTC--CAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTA  48
      |||||  |||||| |||| ||||| |||| ||||||||||||||||||||
seq2  CTTTCTACAGTGA-GGCCAACTAGCCCAT-TTTTGATACATATGCAGCTA  48

seq1  GAGACAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCGAT  98
      ||| |||||||||| |||||||||||| || |||||| ||||||||| ||
seq2  GAGTCAAGAGCTCC-GGGTACTGGTTAATTAATAATG-TGTTCCACCTAT  96

seq1  AGGGTTGCAGATCCCTTTAGCTCCTT  124
      ||||||||||||||||||||||||||
seq2  AGGGTTGCAGATCCCTTTAGCTCCTT  122

seq1: chr2_65554482_65555597
seq2: B6Ng01-076C16.g_68_1182 (reverse)

seq1  GAGTCAGAGACATAT--AAGTGT-ATTAGTAAATTTCTGAAGTGGGGAGA  47
      ||||||||| |||||  | |||| |||||||||| | |||   |||||||
seq2  GAGTCAGAGGCATATTAAGGTGTAATTAGTAAATCT-TGAGTGGGGGAGA  49

seq1  CAGAGA-GCT-CCTAGTATGGCCGCCAGGAGCCATGGGAGGGCAAATGAC  95
      | |||| ||| |||||||| |||| ||||||||||||||||   ||||||
seq2  CTGAGAGGCTCCCTAGTAT-GCCG-CAGGAGCCATGGGAGG--CAATGAC  95

seq1  AGAAGGT--CAGAATGGCCCTGACATTAT-CTTTCTTCTCACTGACTTTT  142
      |||||||   ||||||||||||||  ||| ||||||||||| ||||||| 
seq2  AGAAGGTTCAAGAATGGCCCTGACCATATACTTTCTTCTCATTGACTTT-  144

seq1  ACCTGACACGTCAGTCACGGTCATTTGCATTGGAATTTTAGCTAAAATCT  192
        ||||||||||||||||||||||||||||||| | ||||||||||||||
seq2  -ACTGACACGTCAGTCACGGTCATTTGCATTGGGA-TTTAGCTAAAATCT  192

seq1  TCTGCAAGTTTCCACTTTTGAACTAAAAACCTCTGCATTTAGTCCTGTCT  242
      |||||||||||| || ||||||||||||||||||||||||||||||||||
seq2  TCTGCAAGTTTCAAC-TTTGAACTAAAAACCTCTGCATTTAGTCCTGTCT  241

seq1  ATATTTAATTTTGATTCCGTGTTTGAATAATTGAGGGTTGTGTC-AACT-  290
      |||||||| ||||||||||||||||||||||||||||||||||| |||| 
seq2  ATATTTAA-TTTGATTCCGTGTTTGAATAATTGAGGGTTGTGTCAAACTA  290

seq1  AAACCCTGATTTAAAAAATGATGACAGTCATGTCCCCAGCACTGCCTAAT  340
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGA-TTAAAAAATGATGACAGTCATGTCCCCAGCACTGCCTAAT  339

seq1  TCCTAGTAACCTACCTAGTCTATGGACTTGGAGATTCCTGGTGATACCAC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTAACCTACCTAGTCTATGGACTTGGAGATTCCTGGTGATACCAC  389

seq1  AAACATCACTTTTAATTCAACATAACAGCGGTGTTATTATACCACTTTGT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCACTTTTAATTCAACATAACAGCGGTGTTATTATACCACTTTGT  439

seq1  TATATTTATAAGTCTTGCATGAACTAGTAGCATCTACAAGGTTTTTTTTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTATAAGTCTTGCATGAACTAGTAGCATCTACAAGGTTTTTTTTT  489

seq1  CTTAATCAAAATTAGGAGTGTTGATCTAGCAATACATATATTTTTTAATT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCAAAATTAGGAGTGTTGATCTAGCAATACATATATTTTTTAATT  539

seq1  GAATTTAGCAAGTTACTAAGGTGAAAAAGGTTGCAATGCTGCAGAGGCCA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAGCAAGTTACTAAGGTGAAAAAGGTTGCAATGCTGCAGAGGCCA  589

seq1  AATCATATCCAAATATATAGTTCTATGAATCAAATTACAATAAGTGTTCA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATCCAAATATATAGTTCTATGAATCAAATTACAATAAGTGTTCA  639

seq1  GTGTCCTACTAAATACAGATTACATGTTCAAAATAACAAGCATCCAAAAT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTACTAAATACAGATTACATGTTCAAAATAACAAGCATCCAAAAT  689

seq1  AGCTATTTCTTTTACTTGTCTAGATTCCCCAAGACATAAAGTTAGTATAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTCTTTTACTTGTCTAGATTCCCCAAGACATAAAGTTAGTATAG  739

seq1  AAGTTTCATACCATGGCAGCTTAGGGATTTTGAAACAAACCCAAAATAAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCATACCATGGCAGCTTAGGGATTTTGAAACAAACCCAAAATAAA  789

seq1  AAGAGTATGAGTAGTGTTTGCTATCAGCCAGCCATTTGTTTGTTTTTACT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTATGAGTAGTGTTTGCTATCAGCCAGCCATTTGTTTGTTTTTACT  839

seq1  TTTCTTTGCTGTGTTCTGGGAGACCTTGTCTTTAATGGGATGTATGAAGA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGCTGTGTTCTGGGAGACCTTGTCTTTAATGGGATGTATGAAGA  889

seq1  CAATTCCACGTCTTACAACTAAAGCAAGGGACACAACAGGGTGTCTGATT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCACGTCTTACAACTAAAGCAAGGGACACAACAGGGTGTCTGATT  939

seq1  GCTCTTCCTCCACTTTTTTGTAGGTTCTGAACCTCTTCTTGGCCTTGCTC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCCTCCACTTTTTTGTAGGTTCTGAACCTCTTCTTGGCCTTGCTC  989

seq1  CTCAGTTCTTTCAGCTCGGACAACCTGGCTGCCACAGATGACGATAACGA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTCTTTCAGCTCGGACAACCTGGCTGCCACAGATGACGATAACGA  1039

seq1  AATGAACAACCTCCAGATAGCCGTGGGAAGGATGCAGAAGGGGATTGATT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAACCTCCAGATAGCCGTGGGAAGGATGCAGAAGGGGATTGATT  1089

seq1  TTGTTAAAAGGAAGATACGTGAATTC  1116
      ||||||||||||||||||||||||||
seq2  TTGTTAAAAGGAAGATACGTGAATTC  1115