BAC Information

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BAC

Clone NameB6Ng01-076K07
ChromosomeX (Build37)3 (Build37)
Map Location 62,230,796 - 62,231,25721,639,544 - 21,640,626
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666729, EG627470, 3830417A13Rik, Slitrk4, LOC100040011
Downstream geneCtag2, LOC671840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076K07.bB6Ng01-076K07.g
ACCDH892853DH892854
length9841,076
definitionDH892853|Mus musculus domesticus DNA, BAC clone: B6Ng01-076K07, 5' end.DH892854|Mus musculus domesticus DNA, BAC clone: B6Ng01-076K07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,230,796 - 62,231,257)(21,639,544 - 21,640,626)
sequence
gaattctttgtttagctctgagccccattggtctttatatttttattagg
tattttcctcatttaaatttccaatgctatcccaaagttccccataccct
cccccccccactcccctacccacccattcccactttttggccctggcatt
cccctgtactgggcatataaagtttgcaagtccaatgggcctctctttcc
agtgatggcctactaggccatcttttgattcatatgcagctagagtcaag
agctccggggtactagttagttcataatgttgttccacctatagggttgc
agatccctttagctccttcagtactttctctagctcctccattgggggcc
ctgtgatccatccaatagctgactgtgagcatccacttctgtgtttgcta
ggccctggcatagtctcacaagagacagctatatctgggtcctttcagca
aaatcttgctagtgtatgcaatggtgtcagcgtttggaagctgattatgg
gatggatccccggatatggcagtctctagatggtccatccttttgtctca
gctccaaacattgtctctgtaactccttccatgggtgttttgttcccaat
tctaagaaggggcaaagtgtccacacttcgttcttcgttcttcttgagtt
tcatacgtttagcaaattgtatcttatatcttgggtatcctaagtttctg
ggctaatatcacacttatcagtgagtttttattatcccctttcctagttt
cccttccaaaaaccccctatccctttcccccacctctgctcaccaatctg
cccactccctctttctggtcctggcagtcccctatactggggcatataac
cttcacaggaacaagggactctcctcccatttgatgaccaactagccatc
cactgctacgtatacagctggagctacaagttccactatgtgtttctttg
attgttgtttagtcccagggagccctgagatact
gaattcagtaatgaagttttggatcagaacagggatggctgccaccatta
ctgtgatgaataagctttccaggaggaaactatcagcagcagcatctctc
cagtctagaatggctcgaatttcaaatgttcagagttacttaaaggaagc
tcgccaggccatccaaacaatctggtgtagacttattattaaggagtgtg
ctttcaactcttgtcttcagataagcatcaatccctgttgctttcttttt
ctgaaggcttttatatacttaaataaaataggtgggtatgaaagcttttc
tctcataaaattgtatggctccaaggagactatgcaaagaaattcagccc
acagtatgatgtatcatgtatactccctaaaagaagactgtgcagggttc
tgacattctttcagtcccatcgtcattcctgcctgtgtctcatgtataga
tagcatcatgggcagcagttattggacctggattgcaggaggtgataaag
catggcccttcttcctccacctttctctggcctgacactgaagatttttg
gaatagaccaaaaagaatcactcattgttggaaatgtctaggtgaaatga
ggggaacaagctaatcctgcatctcccatctgaaacaattgttcaaggct
gttgtttcaggaacccatgtctatatgtaagcatacccatctaacatgca
cgtcaggtaacatctataaggtgacaaaataaagtgtcttggtgaggatg
atttgctcagcttatcatccagatgtttatccaaatagcatcccacagct
ggggcatctgaatcagaagctgcggcgtgacttgcaactataacgtgggg
atgacagaatctccctgtcttcacatctgacgttcagcacctcttagaca
caatctgaaagatgtgatggcatatggcacagtcttttagatcaatatca
tacaagcagacagctaacacttttctatgaaaaaaggcttccaggtattt
tgatcatctaaaattcttaggagtgtatcattgaagaaatgtgacaggaa
acaaactgcccttggaattgaaacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_62230796_62231257
seq2: B6Ng01-076K07.b_91_552

seq1  TAGGTATTTTCTTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCAT  50
      ||||||||||| ||||||| ||||||||||||||||| ||||| ||||||
seq2  TAGGTATTTTCCTCATTTAAATTTCCAATGCTATCCC-AAAGTTCCCCAT  49

seq1  ACCCT--CCTCCCCACTCACCTACCCACCCACTCCCACTTCTTGGCCCTG  98
      |||||  || |||||||| |||||||||||| |||||||| |||||||||
seq2  ACCCTCCCCCCCCCACTCCCCTACCCACCCATTCCCACTTTTTGGCCCTG  99

seq1  GCGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACCAATGGGCCTCT  148
      || ||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  GCATTCCCCTGTACTG-GGCATATAAAGTTTGCAAGTCCAATGGGCCTCT  148

seq1  CTTTCCAATGATGGCTGAATAGGCCATCTTCTGATACATATGCAGCTAGA  198
      ||||||| |||||||  | ||||||||||| |||| ||||||||||||||
seq2  CTTTCCAGTGATGGCCTACTAGGCCATCTTTTGATTCATATGCAGCTAGA  198

seq1  GACACGAGCTCTGGGGGGTACTGGTTTGTTCATATTGTTGTTCCACCTAT  248
      | || ||||||   |||||||| ||| ||||||| |||||||||||||||
seq2  GTCAAGAGCTC--CGGGGTACTAGTTAGTTCATAATGTTGTTCCACCTAT  246

seq1  AGGGTTGTAGACCCCTTTAGCTCCTTGAGTACTTTCTCTAGCTCCTCCAT  298
      ||||||| ||| |||||||||||||| |||||||||||||||||||||||
seq2  AGGGTTGCAGATCCCTTTAGCTCCTTCAGTACTTTCTCTAGCTCCTCCAT  296

seq1  T-GGGGCCCTGTGATCCATCCAAGAGCTGACTGTGAGCATCCACTTCTGT  347
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGT  346

seq1  G-TTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGTTATATCAGGGTCA  396
      | ||||||||||| |||||||||||||||||||||| |||||| ||||| 
seq2  GTTTGCTAGGCCCTGGCATAGTCTCACAAGAGACAGCTATATCTGGGTCC  396

seq1  TTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGAGGCT  446
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGAAGCT  446

seq1  GATTATGGGATGGATC  462
      ||||||||||||||||
seq2  GATTATGGGATGGATC  462

seq1: chr3_21639544_21640626
seq2: B6Ng01-076K07.g_69_1144 (reverse)

seq1  TAGTCTCAATTCCAAGTGCAGTTTGTTTTCCTGTCACATTTCTTTCAAAT  50
      |||| ||||||||||| |||||||| ||||||||||||||||||   |||
seq2  TAGTTTCAATTCCAAGGGCAGTTTG-TTTCCTGTCACATTTCTT--CAAT  47

seq1  GATACACTTCCTAAGAATTTTAGATTGATCAAAATACCTGGAAGCCTTTT  100
      ||||||| |||||||||||||||| ||||||||||||||||||||| |||
seq2  GATACAC-TCCTAAGAATTTTAGA-TGATCAAAATACCTGGAAGCC-TTT  94

seq1  TTTCATAG-AAAGTGTTAGCTGTCTGCTTGTATGATATTGAATCTAAAAG  149
      |||||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  TTTCATAGAAAAGTGTTAGCTGTCTGCTTGTATGATATTG-ATCTAAAAG  143

seq1  ACTGTGCCATATGCCATCACATCTTTCAGATTGTGTCTAAGAGGTGCTGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCCATATGCCATCACATCTTTCAGATTGTGTCTAAGAGGTGCTGA  193

seq1  ACGTCAGATGTGAAGACAGGGAGATTCTGTCATCCCCACGTTATAGTTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCAGATGTGAAGACAGGGAGATTCTGTCATCCCCACGTTATAGTTGC  243

seq1  AAGTCACGCCGCAGCTTCCTGATTCAGATGCCCCAGCTGTGGGATGCTAT  299
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAGTCACGCCGCAGCTT-CTGATTCAGATGCCCCAGCTGTGGGATGCTAT  292

seq1  TTGGATAAACATCTGGATGATAAGCTGAGCAAATCATCCTCACCAAGACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATAAACATCTGGATGATAAGCTGAGCAAATCATCCTCACCAAGACA  342

seq1  CTTTATTTTGTCACCTTATAGATGTTACCTGACGTGCATGTTAGATGGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTGTCACCTTATAGATGTTACCTGACGTGCATGTTAGATGGGT  392

seq1  ATGCTTACATATAGACATGGGTTCCTGAAACAACAGCCTTGAACAATTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTACATATAGACATGGGTTCCTGAAACAACAGCCTTGAACAATTGT  442

seq1  TTCAGATGGGAGATGCAGGATTAGCTTGTTCCCCTCATTTCACCTAGACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGGGAGATGCAGGATTAGCTTGTTCCCCTCATTTCACCTAGACA  492

seq1  TTTCCAACAATGAGTGATTCTTTTTGGTCTATTCCAAAAATCTTCAGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACAATGAGTGATTCTTTTTGGTCTATTCCAAAAATCTTCAGTGT  542

seq1  CAGGCCAGAGAAAGGTGGAGGAAGAAGGGCCATGCTTTATCACCTCCTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGAGAAAGGTGGAGGAAGAAGGGCCATGCTTTATCACCTCCTGC  592

seq1  AATCCAGGTCCAATAACTGCTGCCCATGATGCTATCTATACATGAGACAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGGTCCAATAACTGCTGCCCATGATGCTATCTATACATGAGACAC  642

seq1  AGGCAGGAATGACGATGGGACTGAAAGAATGTCAGAACCCTGCACAGTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAATGACGATGGGACTGAAAGAATGTCAGAACCCTGCACAGTCT  692

seq1  TCTTTTAGGGAGTATACATGATACATCATACTGTGGGCTGAATTTCTTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAGGGAGTATACATGATACATCATACTGTGGGCTGAATTTCTTTG  742

seq1  CATAGTCTCCTTGGAGCCATACAATTTTATGAGAGAAAAGCTTTCATACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCTCCTTGGAGCCATACAATTTTATGAGAGAAAAGCTTTCATACC  792

seq1  CACCTATTTTATTTAAGTATATAAAAGCCTTCAGAAAAAGAAAGCAACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATTTTATTTAAGTATATAAAAGCCTTCAGAAAAAGAAAGCAACAG  842

seq1  GGATTGATGCTTATCTGAAGACAAGAGTTGAAAGCACACTCCTTAATAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGATGCTTATCTGAAGACAAGAGTTGAAAGCACACTCCTTAATAAT  892

seq1  AAGTCTACACCAGATTGTTTGGATGGCCTGGCGAGCTTCCTTTAAGTAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTACACCAGATTGTTTGGATGGCCTGGCGAGCTTCCTTTAAGTAAC  942

seq1  TCTGAACATTTGAAATTCGAGCCATTCTAGACTGGAGAGATGCTGCTGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACATTTGAAATTCGAGCCATTCTAGACTGGAGAGATGCTGCTGCT  992

seq1  GATAGTTTCCTCCTGGAAAGCTTATTCATCACAGTAATGGTGGCAGCCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTTTCCTCCTGGAAAGCTTATTCATCACAGTAATGGTGGCAGCCAT  1042

seq1  CCCTGTTCTGATCCAAAACTTCATTACTGAATTC  1083
      ||||||||||||||||||||||||||||||||||
seq2  CCCTGTTCTGATCCAAAACTTCATTACTGAATTC  1076