BAC Information

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BAC

Clone NameB6Ng01-076L06
Chromosome3 (Build37)
Map Location 120,125,404 - 120,242,792
singlet/doubletdoublet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076L06.bB6Ng01-076L06.g
ACCDH892888DH892889
length1,108110
definitionDH892888|Mus musculus domesticus DNA, BAC clone: B6Ng01-076L06, 5' end.DH892889|Mus musculus domesticus DNA, BAC clone: B6Ng01-076L06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,125,404 - 120,126,514)(120,242,683 - 120,242,792)
sequence
gaattcagaaactttgaaggtatttagtagccctttttttttttaaatat
atatttccatgtttgcttctctgttgtggtttgtccatctgctgggatac
cttttctagtgagtagcaagccccagaggaatagattctgagtgatgctg
aaagaggaggagacaacccaccataaaagtacccacctctaaaccaacca
gatagagggatacatgtaaaaaaattgaagaagtactgtggcatctataa
ctgtagaaaataattaatattaaaattaattttaagagcatggaataaaa
tggaatcatggaagaaaagtaaagagaaaatataaaattaaggggaataa
aaagaagaaataggtaaagagggtgaaaaaaatagaaagaaaagagcaag
agataaaatgtctatttgcattatattcttcccaccatcaactcctccca
gatccatctcccttctcttcccatccaagtttatgatttcctttttcctt
aaacccatagagtccagcctgtgccacccatatccttttggatgtgtggt
cttcctctagagcatggtctacctaccagaggttatatcctgaaagaaaa
ctgactctccctttcccgctgccaagagatccttattaaggagcgaggct
tcttgtccacttcttatctccatactgacttagccagcaaatgtcttatg
cattttgtctcaaccactgtgagttcatatgcgtagcttccctgctgtgt
ccagaaaaacacagtttttaggtagtctttagagtatctctggctctaac
aaattttccacctaaccctggagctttgggtagaaggactgcactttcat
ttaagattaaacattcctctgagaggctctatctagtagctgacagagac
agatgcaaatagccactgctaaacattggatggaaatctcttaaggaaga
gttccagaaagattgaaggccctgaagtatatgaacaaccccagagagga
gaccacagtgttcaatttaacctgaacccttgggagtcccagagactgga
gcacaaacaaaggacatacatggctgacatgccctacatacatagcagag
ggctgctt
ctcccttaacacctcctcttctcccttcttctgaacattgttcctctttt
ccttactgcttttcttctcctggtcttcttttttttttccctccctccct
ccctccctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_120125404_120126514
seq2: B6Ng01-076L06.b_49_1156

seq1  GAATTCAGAAACTTTGAAGGTATTTAGTAGCCCTTTTTTTTTTTAAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAACTTTGAAGGTATTTAGTAGCCCTTTTTTTTTTTAAATAT  50

seq1  ATATTTCCATGTTTGCTTCTCTGTTGTGGTTTGTCCATCTGCTGGGATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCATGTTTGCTTCTCTGTTGTGGTTTGTCCATCTGCTGGGATAC  100

seq1  CTTTTCTAGTGAGTAGCAAGCCCCAGAGGAATAGATTCTGAGTGATGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTAGTGAGTAGCAAGCCCCAGAGGAATAGATTCTGAGTGATGCTG  150

seq1  AAAGAGGAGGAGACAACCCACCATAAAAGTACCCACCTCTAAACCAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGAGGAGACAACCCACCATAAAAGTACCCACCTCTAAACCAACCA  200

seq1  GATAGAGGGATACATGTAAAAAAATTGAAGAAGTACTGTGGCATCTATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGGGATACATGTAAAAAAATTGAAGAAGTACTGTGGCATCTATAA  250

seq1  CTGTAGAAAATAATTAATATTAAAATTAATTTTAAGAGCATGGAATAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAAAATAATTAATATTAAAATTAATTTTAAGAGCATGGAATAAAA  300

seq1  TGGAATCATGGAAGAAAAGTAAAGAGAAAATATAAAATTAAGGGGAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCATGGAAGAAAAGTAAAGAGAAAATATAAAATTAAGGGGAATAA  350

seq1  AAAGAAGAAATAGGTAAAGAGGGTGAAAAAAATAGAAAGAAAAGAGCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAATAGGTAAAGAGGGTGAAAAAAATAGAAAGAAAAGAGCAAG  400

seq1  AGATAAAATGTCTATTTGCATTATATTCTTCCCACCATCAACTCCTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAATGTCTATTTGCATTATATTCTTCCCACCATCAACTCCTCCCA  450

seq1  GATCCATCTCCCTTCTCTTCCCATCCAAGTTTATGATTTCCTTTTTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATCTCCCTTCTCTTCCCATCCAAGTTTATGATTTCCTTTTTCCTT  500

seq1  AAACCCATAGAGTCCAGCCTGTGCCACCCATATCCTTTTGGATGTGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCATAGAGTCCAGCCTGTGCCACCCATATCCTTTTGGATGTGTGGT  550

seq1  CTTCCTCTAGAGCATGGTCTACCTACCAGAGGTTATATCCTGAAAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTAGAGCATGGTCTACCTACCAGAGGTTATATCCTGAAAGAAAA  600

seq1  CTGACTCTCCCTTTCCCGCTGCCAAGAGATCCTTATTAAGGAGCGAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTCCCTTTCCCGCTGCCAAGAGATCCTTATTAAGGAGCGAGGCT  650

seq1  TCTTGTCCACTTCTTATCTCCATACTGACTTAGCCAGCAAATGTCTTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCCACTTCTTATCTCCATACTGACTTAGCCAGCAAATGTCTTATG  700

seq1  CATTTTGTCTCAACCACTGTGAGTTCATATGCGTAGCTTCCCTGCTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTCTCAACCACTGTGAGTTCATATGCGTAGCTTCCCTGCTGTGT  750

seq1  CCAGAAAAACACAGTTTTTAGGTAGTCTTTAGAGTATCTCTGGCTCTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAAACACAGTTTTTAGGTAGTCTTTAGAGTATCTCTGGCTCTAAC  800

seq1  AAATTTTCCACCTAACCCTGGAGCTTTGGGTAGAAGGACTGCAC-TTCAT  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAATTTTCCACCTAACCCTGGAGCTTTGGGTAGAAGGACTGCACTTTCAT  850

seq1  TTAAGATTAAACATTCCTCTGAGAGGCTCTATCTAGTAGCTGACAGAGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTAAACATTCCTCTGAGAGGCTCTATCTAGTAGCTGACAGAGAC  900

seq1  AGATGCAAATAGCCACTGCTAAACATTGGATGGAGATCTCTTAAGGAAGA  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGATGCAAATAGCCACTGCTAAACATTGGATGGAAATCTCTTAAGGAAGA  950

seq1  GTTCCAGAAGGATTGAAGGCCCTGAAGTATATG-ACAACCCCAGAGA-GA  997
      ||||||||| ||||||||||||||||||||||| ||||||||||||| ||
seq2  GTTCCAGAAAGATTGAAGGCCCTGAAGTATATGAACAACCCCAGAGAGGA  1000

seq1  GACCAACAGTG-TCAA-TTAACCTGAACCCTTGGGAGTTCCCAGAGACTG  1045
      |||| |||||| |||| |||||||||||||||||||| ||||||||||||
seq2  GACC-ACAGTGTTCAATTTAACCTGAACCCTTGGGAG-TCCCAGAGACTG  1048

seq1  AGCCACCAACCAAAGCACATACATGGGCTGGACAAGGCCCCCAACATACA  1095
         || ||| ||||| |||||||| |||| |||| |   ||| |||||||
seq2  GAGCA-CAAACAAAGGACATACAT-GGCT-GACATG---CCCTACATACA  1092

seq1  TAGCAGAGGGCTGCTT  1111
      ||||||||||||||||
seq2  TAGCAGAGGGCTGCTT  1108

seq1: chr3_120242683_120242792
seq2: B6Ng01-076L06.g_73_182 (reverse)

seq1  GGAGGGAGGGAGGGAGGGAGGGAAAAAAAAAAGAAGACCAGGAGAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGGGAGGGAGGGAGGGAAAAAAAAAAGAAGACCAGGAGAAGAAA  50

seq1  AGCAGTAAGGAAAAGAGGAACAATGTTCAGAAGAAGGGAGAAGAGGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAAGGAAAAGAGGAACAATGTTCAGAAGAAGGGAGAAGAGGAGGT  100

seq1  GTTAAGGGAG  110
      ||||||||||
seq2  GTTAAGGGAG  110