BAC Information

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BAC

Clone NameB6Ng01-076N09
Chromosome3 (Build37)
Map Location 119,873,452 - 120,005,123
singlet/doubletdoublet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076N09.bB6Ng01-076N09.g
ACCDH892986DH892987
length1,1031,002
definitionDH892986|Mus musculus domesticus DNA, BAC clone: B6Ng01-076N09, 5' end.DH892987|Mus musculus domesticus DNA, BAC clone: B6Ng01-076N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,004,008 - 120,005,123)(119,873,452 - 119,874,451)
sequence
gaattcatccaaattaatggacgaatccaattttctcttcctcaagtaga
ttttaagatgcttgggaatttttcctgatttcctgttttgggaaatccta
ggtaaattctagaatattcatttctaagttcttttaaacttcccaaatct
gcaatatgtgaatgtatgaatggtgtatattttcatgtttaaaattattt
aaaattttggctacatttatagctttaatttgcttgtatgtcaatctatc
aatctatctatctatctatctatctatctatgctggaaaaagtatacaag
acactgcatatattaagcaagtgatctaccacttaccacagacttaaatt
cctacccagtaagcgtgttattttgtatattttgcatatactttgcatat
gtgcatattgttttcttttgtcattccaaatgtaatttggcctatttaca
caaatatgatacaatatggagtgtcttattatatacccactcctctcctg
tgcacccttatctcccactaacctccttctcattatcaggtcacatagct
tctcagtacttccttttccctttctatctcctttatacccaggcatacac
ctacttatccatccatgtacttacaatcaatgaatctgtgattcacatat
gagagaaaacgtatgatttacctgagtctgcgtcacatcactgatttaat
acatccaagattcattcattcctttctaaacttcatgatcacattttctt
ctgcatagacaaataaaatgtcattgtatgtagacgccattttcattctc
tattctgtctgaaaatagtttgaaaggattttaaaatccctacttctagt
ttctttgtcactgcaaatactattttttcttgactttaatttgccttgtt
gtattaggtctatcttagagttttaaggacttagctttatttttttttat
attttttaaatacttctatcccaaaatcctcttattggtatatttaccct
aaataattcttcggttgacttgattttaattggtatatctactcagagtt
tagctattctcttttcccatattaatgataaaaaatctccataccattta
gtg
gaattctcattgtatggacacttcccttggaatatccacatacctcttgg
gatttcttatataatttatcattccattccatacatccaacagaggtact
tttcatcagtcttttctgatggaatccactctggagatttgtgtcccttg
ctaacacatcttcctcctacatgagtcactgagctttcctctttaagacc
attcagggaggacagaagtggctctctcagtcaactatcagatatagatt
tgcgcaagtagaaagactgttgtgtttttggaaatctggccagcataagt
actgttgattgaagacgggccatgaggtcacactgggaactgaaggtgtg
aagtgagaacagagatggatttaaataccaaggtttatcttcaggaaaaa
taaagaggatgggaatcaaagacaaagaaaaaatacataaagaagaatat
gtatagtttattgagtgtacagtgcatgtgtggttcatggtttaggaagc
caagaatgatatagcttaatgaatctatgctagatataaagaatggaaaa
cagtgagtgccaggtagacttgtgctccttgtaggatgctacactccatg
tatggagttgttctctctgtaggatgaactcagttcctttttgaagtttt
cttttgaagtattttatttttaaaaggttatttattaaaactccattatc
aggaaattgcaaacaaaatgaatagacccccctttcaaaatagaagtttg
tgtacaacaaactggacacatttagaccattttgaaacatgttgaaactc
atgcgatcttcattataatcacagttttgaatatacccttcccccacaga
ggtttatgtccttcatgtgctttgtgatccctccaacctgtcatgctcct
tagccttccataggtgatcttctggtcaagataaagtatggctttgttta
gattttccacactttacaacaatggaggtgtgtgtgttttgtgtggtgtg
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_120004008_120005123
seq2: B6Ng01-076N09.b_42_1144 (reverse)

seq1  CACTAAAATGGTTATGGGAGATTTTTTTATCATTAAATATGAGAAAAGAA  50
      |||| |||||| ||| ||||| |||||||||||| |||||| |||||| |
seq2  CACT-AAATGG-TAT-GGAGA-TTTTTTATCATT-AATATGGGAAAAG-A  44

seq1  GAATAGCTTAAAACTCTGAGTAGATATACCAATTAAAAATCAAAGTCAAA  100
      ||||||||  |||||||||||||||||||||||| |||||| ||||| ||
seq2  GAATAGCT--AAACTCTGAGTAGATATACCAATT-AAAATC-AAGTC-AA  89

seq1  CCGAAGAATTATTTAAGGTAAATAATACCAATAAAGAGATTTTGGGATAG  150
      ||||||||||||||| ||||||| ||||||||||   |||||||||||||
seq2  CCGAAGAATTATTTAGGGTAAAT-ATACCAATAAGAGGATTTTGGGATAG  138

seq1  AAGTAATTTTAAAAAATAT-AAAAAAAATAAAGCTAAGTCCTTAAAACTC  199
      |||||  |||||||||||| ||||||||||||||||||||||||||||||
seq2  AAGTA--TTTAAAAAATATAAAAAAAAATAAAGCTAAGTCCTTAAAACTC  186

seq1  TAAGATAGAACTAATACAACAAGGCAAATTAAAAGTCAAGAAAAAATAGT  249
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  TAAGATAGACCTAATACAACAAGGCAAATT-AAAGTCAAGAAAAAATAGT  235

seq1  ATTTGCAGTGACAAAGAAACTAGAAGTAGGGATTTTAAAATCCTTTCAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAGTGACAAAGAAACTAGAAGTAGGGATTTTAAAATCCTTTCAAA  285

seq1  CTATTTTCAGACAGAATAGAGAATGAAAATGGCGTCTACATACAATGACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCAGACAGAATAGAGAATGAAAATGGCGTCTACATACAATGACA  335

seq1  TTTTATTTGTCTATGCAGAAG-AAATGTGATCATGAAGTTTAGAAAGGAA  398
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTTATTTGTCTATGCAGAAGAAAATGTGATCATGAAGTTTAGAAAGGAA  385

seq1  TGAATGAATCTTGGATGTATTAAATCAGTGATGTGACGCAGACTCAGGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAATCTTGGATGTATTAAATCAGTGATGTGACGCAGACTCAGGTA  435

seq1  AATCATACGTTTTCTCTCATATGTGAATCACAGATTCATTGATTGTAAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATACGTTTTCTCTCATATGTGAATCACAGATTCATTGATTGTAAGT  485

seq1  ACATGGATGGATAAGTAGGTGTATGCCTGGGTATAAAGGAGATAGAAAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGATGGATAAGTAGGTGTATGCCTGGGTATAAAGGAGATAGAAAGG  535

seq1  GAAAAGGAAGTACTGAGAAGCTATGTGACCTGATAATGAGAAGGAGGTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAAGTACTGAGAAGCTATGTGACCTGATAATGAGAAGGAGGTTA  585

seq1  GTGGGAGATAAGGGTGCACAGGAGAGGAGTGGGTATATAATAAGACACTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGATAAGGGTGCACAGGAGAGGAGTGGGTATATAATAAGACACTC  635

seq1  CATATTGTATCATATTTGTGTAAATAGGCCAAATTACATTTGGAATGACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGTATCATATTTGTGTAAATAGGCCAAATTACATTTGGAATGACA  685

seq1  AAAGAAAACAATATGCACATATGCAAAGTATATGCAAAATATACAAAATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAACAATATGCACATATGCAAAGTATATGCAAAATATACAAAATA  735

seq1  ACACGCTTACTGGGTAGGAATTTAAGTCTGTGGTAAGTGGTAGATCACTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCTTACTGGGTAGGAATTTAAGTCTGTGGTAAGTGGTAGATCACTT  785

seq1  GCTTAATATATGCAGTGTCTTGTATACTTTTTCCAGCATAGATAGATAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATATATGCAGTGTCTTGTATACTTTTTCCAGCATAGATAGATAGA  835

seq1  TAGATAGATAGATAGATTGATAGATTGACATACAAGCAAATTAAAGCTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAGATAGATTGATAGATTGACATACAAGCAAATTAAAGCTAT  885

seq1  AAATGTAGCCAAAATTTTAAATAATTTTAAACATGAAAATATACACCATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAGCCAAAATTTTAAATAATTTTAAACATGAAAATATACACCATT  935

seq1  CATACATTCACATATTGCAGATTTGGGAAGTTTAAAAGAACTTAGAAATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTCACATATTGCAGATTTGGGAAGTTTAAAAGAACTTAGAAATG  985

seq1  AATATTCTAGAATTTACCTAGGATTTCCCAAAACAGGAAATCAGGAAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTAGAATTTACCTAGGATTTCCCAAAACAGGAAATCAGGAAAAA  1035

seq1  TTCCCAAGCATCTTAAAATCTACTTGAGGAAGAGAAAATTGGATTCGTCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGCATCTTAAAATCTACTTGAGGAAGAGAAAATTGGATTCGTCC  1085

seq1  ATTAATTTGGATGAATTC  1116
      ||||||||||||||||||
seq2  ATTAATTTGGATGAATTC  1103

seq1: chr3_119873452_119874451
seq2: B6Ng01-076N09.g_71_1072

seq1  GAATTCTCATTGTATGGACACTTCCCTTGGAATATCCACATACCTCTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTGTATGGACACTTCCCTTGGAATATCCACATACCTCTTGG  50

seq1  GATTTCTTATATAATTTATCATTCCATTCCATACATCCAACAGAGGTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTATATAATTTATCATTCCATTCCATACATCCAACAGAGGTACT  100

seq1  TTTCATCAGTCTTTTCTGATGGAATCCACTCTGGAGATTTGTGTCCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCAGTCTTTTCTGATGGAATCCACTCTGGAGATTTGTGTCCCTTG  150

seq1  CTAACACATCTTCCTCCTACATGAGTCACTGAGCTTTCCTCTTTAAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACATCTTCCTCCTACATGAGTCACTGAGCTTTCCTCTTTAAGACC  200

seq1  ATTCAGGGAGGACAGAAGTGGCTCTCTCAGTCAACTATCAGATATAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGGAGGACAGAAGTGGCTCTCTCAGTCAACTATCAGATATAGATT  250

seq1  TGCGCAAGTAGAAAGACTGTTGTGTTTTTGGAAATCTGGCCAGCATAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCAAGTAGAAAGACTGTTGTGTTTTTGGAAATCTGGCCAGCATAAGT  300

seq1  ACTGTTGATTGAAGACGGGCCATGAGGTCACACTGGGAACTGAAGGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGATTGAAGACGGGCCATGAGGTCACACTGGGAACTGAAGGTGTG  350

seq1  AAGTGAGAACAGAGATGGATTTAAATACCAAGGTTTATCTTCAGGAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGAACAGAGATGGATTTAAATACCAAGGTTTATCTTCAGGAAAAA  400

seq1  TAAAGAGGATGGGAATCAAAGACAAAGAAAAAATACATAAAGAAGAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGGATGGGAATCAAAGACAAAGAAAAAATACATAAAGAAGAATAT  450

seq1  GTATAGTTTATTGAGTGTACAGTGCATGTGTGGTTCATGGTTTAGGAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTTTATTGAGTGTACAGTGCATGTGTGGTTCATGGTTTAGGAAGC  500

seq1  CAAGAATGATATAGCTTAATGAATCTATGCTAGATATAAAGAATGGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGATATAGCTTAATGAATCTATGCTAGATATAAAGAATGGAAAA  550

seq1  CAGTGAGTGCCAGGTAGACTTGTGCTCCTTGTAGGATGCTACACTCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGTGCCAGGTAGACTTGTGCTCCTTGTAGGATGCTACACTCCATG  600

seq1  TATGGAGTTGTTCTCTCTGTAGGATGAACTCAGTTCCTTTTTGAAGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGTTGTTCTCTCTGTAGGATGAACTCAGTTCCTTTTTGAAGTTTT  650

seq1  C-TTTGAAGTATTTTATTTTTAAAAGGTTATTTATTAAAACTCCATTATC  699
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAAGTATTTTATTTTTAAAAGGTTATTTATTAAAACTCCATTATC  700

seq1  AGGAAATTGCAAACAAAATGAATAGACCCCCCTTTCAAAATAGAAGTTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATTGCAAACAAAATGAATAGACCCCCCTTTCAAAATAGAAGTTTG  750

seq1  TGTACAACAAACTGGACACATTTAGACCATTTTGAAACATGTTGAAACTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAACAAACTGGACACATTTAGACCATTTTGAAACATGTTGAAACTC  800

seq1  ATGCGATCTTCATTATAATCACAG-TTTGAATATACCCTTCCCCCACAGA  848
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGCGATCTTCATTATAATCACAGTTTTGAATATACCCTTCCCCCACAGA  850

seq1  GGTTTTATGTCCTTCATGTGCTTTGTGATCCCTCCAACCTGTCATGCTCC  898
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-TTTATGTCCTTCATGTGCTTTGTGATCCCTCCAACCTGTCATGCTCC  899

seq1  TTAGCCTTCCATAGGTGATC-TCTGGTCCAGATAAAGTATGGCTTTGTTT  947
      |||||||||||||||||||| ||||||| |||||||||||||||||||||
seq2  TTAGCCTTCCATAGGTGATCTTCTGGTCAAGATAAAGTATGGCTTTGTTT  949

seq1  AGATTTTCCACACTTTACAACAATGAAGGTGTGTGTGTGTGTGTGT-GTG  996
      ||||||||||||||||||||||||| |||||||||||| | ||||| |||
seq2  AGATTTTCCACACTTTACAACAATGGAGGTGTGTGTGT-TTTGTGTGGTG  998

seq1  TGTG  1000
      ||||
seq2  TGTG  1002