BAC Information

Click to search

BAC

Clone NameB6Ng01-077D17
Chromosome3 (Build37)
Map Location 144,593,576 - 144,747,425
singlet/doubletdoublet
Overlap geneAI747448, Clca6, Clca3, Clca5
Upstream geneLOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139
Downstream geneOdf2l, Col24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077D17.bB6Ng01-077D17.g
ACCDH893263DH893264
length6511,159
definitionDH893263|Mus musculus domesticus DNA, BAC clone: B6Ng01-077D17, 5' end.DH893264|Mus musculus domesticus DNA, BAC clone: B6Ng01-077D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,746,775 - 144,747,425)(144,593,576 - 144,594,742)
sequence
gaattcttttggatctcagactatccagtaaaggtttactgaggtctagt
actctgcagtgagcctgagaaaacacccatgaactgacagccaaactcct
tatggccgaatgcctcatagttacatcagctgtcattcaaagtgagcaaa
gcacatctcccactacctcccaccagcactttcttgtagacacagtttgt
cagagaagatttactctgttctttttatgtatctgtcttaatagttgaca
ttcaaattatgtatttcaggaggtctaaagttcttcattccagataaatt
tacttctaatggaatgactgaagctttcgttcgaatctcttctggaacag
gagacattttccagcaaagcttacaggtcagaatgtcagtgtttctatat
agatggagagtggaccagattggctgcactatctgcattattattattct
ttggatatcgaactctctgtgtgtggatagctctaaggagcttctgggta
tccccattttacctcacgtctgtacggctcagttccaggagttgttttct
gtaatgactttagctttcaaggtccatgagaagacttctttgtgacggaa
aatggagctaggggttggatagggtagagtaggatcaggtagggtagggt
a
gaattcttttaggtctctaaaaatagtcttatcaaatatccattttctga
attcaaaaaaatttgaagccaatcatttattcctgtacaacaagaatcca
ccattgacagtctggtctttgtattctatgggaaaaatatgttttatctt
ttagagttcaaaggacaccaggtacgacacctctgagctgatgggtgggt
gacagagaatgcatggcaagtggaagccaactgaaatcataaggaaaatt
cagttcatgcccagcagggagctcaacaacgagcattggggcccagtggg
gacgaccccaaaccaagtagaagttgtggatgttgctcctgaggacgtga
gaaatgatcatgtagctgaaatggcagtctttacatggaatgttggagtt
ggaagagactttatcaaactaaagtcctaggattagtgagggggcctctc
cctctgtttgcaaccacttggtgggctcacaccctccacacactggtcat
ctctaattttcatctaagttcacattttacatctctccatggattcagag
gtctgtctcttctacatggatgtcaaaaatctcctcaatctgtaaccacc
tcgagctcctcctccccaggcacagctctttgttgtagtttcccttccca
gctgatgaaagttctctacaagtagttaagccaaagttggaaagtttgcc
ttgcctcttaacatttcctctctaccttctccgttccacacaagaataaa
ccaacaagagtgttgtctttcatgctttcaaatatgttcagcatcacttg
aatcactcctcacacctccttgtcccaggcaatgctcctgttcataacca
cagcctggcctctttcttcaccctatcctgcaatcatacagtgatgtgat
tatgagttgagccttctatggtttcaggtagacagagcagttatagaata
gaccccaaagtgtccacatcctcactaagctcttcatgagtcttcattac
ttttccaagtttgggctctgccttctgtgcataagcctctcccagctttc
aatgtaagacagaacacccctccctcagctaatcactgatcctgattagt
ggacagctattacccacatagactctccgtctggcttgccacatgtcaat
catgagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144746775_144747425
seq2: B6Ng01-077D17.b_47_697 (reverse)

seq1  TACCCTACCCTACCTGATCCTACTCTACCCTATCCAACCCCTAGCTCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTACCCTACCTGATCCTACTCTACCCTATCCAACCCCTAGCTCCAT  50

seq1  TTTCCGTCACAAAGAAGTCTTCTCATGGACCTTGAAAGCTAAAGTCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGTCACAAAGAAGTCTTCTCATGGACCTTGAAAGCTAAAGTCATTA  100

seq1  CAGAAAACAACTCCTGGAACTGAGCCGTACAGACGTGAGGTAAAATGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACAACTCCTGGAACTGAGCCGTACAGACGTGAGGTAAAATGGGG  150

seq1  ATACCCAGAAGCTCCTTAGAGCTATCCACACACAGAGAGTTCGATATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAGAAGCTCCTTAGAGCTATCCACACACAGAGAGTTCGATATCCA  200

seq1  AAGAATAATAATAATGCAGATAGTGCAGCCAATCTGGTCCACTCTCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAATAATAATGCAGATAGTGCAGCCAATCTGGTCCACTCTCCATC  250

seq1  TATATAGAAACACTGACATTCTGACCTGTAAGCTTTGCTGGAAAATGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGAAACACTGACATTCTGACCTGTAAGCTTTGCTGGAAAATGTCT  300

seq1  CCTGTTCCAGAAGAGATTCGAACGAAAGCTTCAGTCATTCCATTAGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCCAGAAGAGATTCGAACGAAAGCTTCAGTCATTCCATTAGAAGT  350

seq1  AAATTTATCTGGAATGAAGAACTTTAGACCTCCTGAAATACATAATTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATCTGGAATGAAGAACTTTAGACCTCCTGAAATACATAATTTGA  400

seq1  ATGTCAACTATTAAGACAGATACATAAAAAGAACAGAGTAAATCTTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAACTATTAAGACAGATACATAAAAAGAACAGAGTAAATCTTCTCT  450

seq1  GACAAACTGTGTCTACAAGAAAGTGCTGGTGGGAGGTAGTGGGAGATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACTGTGTCTACAAGAAAGTGCTGGTGGGAGGTAGTGGGAGATGTG  500

seq1  CTTTGCTCACTTTGAATGACAGCTGATGTAACTATGAGGCATTCGGCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTCACTTTGAATGACAGCTGATGTAACTATGAGGCATTCGGCCAT  550

seq1  AAGGAGTTTGGCTGTCAGTTCATGGGTGTTTTCTCAGGCTCACTGCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTTGGCTGTCAGTTCATGGGTGTTTTCTCAGGCTCACTGCAGAG  600

seq1  TACTAGACCTCAGTAAACCTTTACTGGATAGTCTGAGATCCAAAAGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGACCTCAGTAAACCTTTACTGGATAGTCTGAGATCCAAAAGAATT  650

seq1  C  651
      |
seq2  C  651

seq1: chr3_144593576_144594742
seq2: B6Ng01-077D17.g_70_1228

seq1  GAATTCTTTTAGGTCTCTAAAAATAGTCTTATCAAATATCCATTTTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAGGTCTCTAAAAATAGTCTTATCAAATATCCATTTTCTGA  50

seq1  ATTCAAAAAAATTTGAAGCCAATCATTTATTCCTGTACAACAAGAATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAAAAATTTGAAGCCAATCATTTATTCCTGTACAACAAGAATCCA  100

seq1  CCATTGACAGTCTGGTCTTTGTATTCTATGGGAAAAATATGTTTTATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGACAGTCTGGTCTTTGTATTCTATGGGAAAAATATGTTTTATCTT  150

seq1  TTAGAGTTCAAAGGACACCAGGTACGACACCTCTGAGCTGATGGGTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTTCAAAGGACACCAGGTACGACACCTCTGAGCTGATGGGTGGGT  200

seq1  GACAGAGAATGCATGGCAAGTGGAAGCCAACTGAAATCATAAGGAAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAATGCATGGCAAGTGGAAGCCAACTGAAATCATAAGGAAAATT  250

seq1  CAGTTCATGCCCAGCAGGGAGCTCAACAACGAGCATTGGGGCCCAGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCATGCCCAGCAGGGAGCTCAACAACGAGCATTGGGGCCCAGTGGG  300

seq1  GACGACCCCAAACCAAGTAGAAGTTGTGGATGTTGCTCCTGAGGACGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGACCCCAAACCAAGTAGAAGTTGTGGATGTTGCTCCTGAGGACGTGA  350

seq1  GAAATGATCATGTAGCTGAAATGGCAGTCTTTACATGGAATGTTGGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGATCATGTAGCTGAAATGGCAGTCTTTACATGGAATGTTGGAGTT  400

seq1  GGAAGAGACTTTATCAAACTAAAGTCCTAGGATTAGTGAGGGGGCCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGACTTTATCAAACTAAAGTCCTAGGATTAGTGAGGGGGCCTCTC  450

seq1  CCTCTGTTTGCAACCACTTGGTGGGCTCACACCCTCCACACACTGGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTTTGCAACCACTTGGTGGGCTCACACCCTCCACACACTGGTCAT  500

seq1  CTCTAATTTTCATCTAAGTTCACATTTTACATCTCTCCATGGATTCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATTTTCATCTAAGTTCACATTTTACATCTCTCCATGGATTCAGAG  550

seq1  GTCTGTCTCTTCTACATGGATGTCAAAAATCTCCTCAATCTGTAACCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTCTTCTACATGGATGTCAAAAATCTCCTCAATCTGTAACCACC  600

seq1  TCGAGCTCCTCCTCCCCAGGCACAGCTCTTTGTTGTAGTTTCCCTTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGCTCCTCCTCCCCAGGCACAGCTCTTTGTTGTAGTTTCCCTTCCCA  650

seq1  GCTGATGAAAGTTCTCTACAAGTAGTTAAGCCAAAGTTGGAAAGTTTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGAAAGTTCTCTACAAGTAGTTAAGCCAAAGTTGGAAAGTTTGCC  700

seq1  TTGCCTCTTAACATTTCCTCTCTACCTTCTCCGTTCCACACAAGAATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCTTAACATTTCCTCTCTACCTTCTCCGTTCCACACAAGAATAAA  750

seq1  CCAACAAGAGTGTTGTCTTTCATGCTTTCAAAATATGTTCAGCATCACTT  800
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCAACAAGAGTGTTGTCTTTCATGCTTTC-AAATATGTTCAGCATCACTT  799

seq1  GAATCACTCCTCACACCTCCTTGTCCCAGGCAATGCTCCTGTTCATAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACTCCTCACACCTCCTTGTCCCAGGCAATGCTCCTGTTCATAACC  849

seq1  ACAGCCTGG-CTCCTTCTTCACCCCTATCCTGCAATCATACAGTGATGTG  899
      ||||||||| ||| ||||||| ||||||||||||||||||||||||||||
seq2  ACAGCCTGGCCTCTTTCTTCA-CCCTATCCTGCAATCATACAGTGATGTG  898

seq1  A-TATGAG-TGAGCCTTCTATGGTTTCAGGTAGACAGAGCAGTCATAGAA  947
      | |||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  ATTATGAGTTGAGCCTTCTATGGTTTCAGGTAGACAGAGCAGTTATAGAA  948

seq1  TAGACCCCAAAGTGTCCACATCCTCCACTAAGCTCTTTCATGGAGTC-TC  996
      |||||||||||||||||||||||| |||||||||| ||||| ||||| ||
seq2  TAGACCCCAAAGTGTCCACATCCT-CACTAAGCTC-TTCAT-GAGTCTTC  995

seq1  ATTACTTTCCAAAGGTCTGGGCTCTGCC-TCTGTGCATAAGCCTCTCCCA  1045
      |||||||| | || || ||||||||||| |||||||||||||||||||||
seq2  ATTACTTTTCCAA-GTTTGGGCTCTGCCTTCTGTGCATAAGCCTCTCCCA  1044

seq1  GC-TTCAGTGTAAGACAG-ACA-CCCTCCCTCCAGCTTATTCACTGTTTC  1092
      || |||| |||||||||| ||| |||||||| |||| || |||||| |  
seq2  GCTTTCAATGTAAGACAGAACACCCCTCCCT-CAGC-TAATCACTGAT--  1090

seq1  CTTGATTATGTGACCTGCTATTACCCACATAAGGCTCT-CGTCTTGGCGT  1141
      | |||||| |||  | |||||||||||||| || |||| |||| ||||  
seq2  CCTGATTA-GTGGACAGCTATTACCCACAT-AGACTCTCCGTC-TGGC--  1135

seq1  CTGCTCACATGTCATATCATGAGTGG  1167
       ||| ||||||||| |||||||||||
seq2  TTGC-CACATGTCA-ATCATGAGTGG  1159