BAC Information

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BAC

Clone NameB6Ng01-077E15
Chromosome3 (Build37)
Map Location 36,431,365 - 36,552,105
singlet/doubletdoublet
Overlap geneLOC665709, Exosc9, Ccna2, Bbs7, Trpc3
Upstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik
Downstream gene4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077E15.bB6Ng01-077E15.g
ACCDH893306DH893307
length1,0981,118
definitionDH893306|Mus musculus domesticus DNA, BAC clone: B6Ng01-077E15, 5' end.DH893307|Mus musculus domesticus DNA, BAC clone: B6Ng01-077E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,550,991 - 36,552,105)(36,431,365 - 36,432,498)
sequence
gaattcttaggctggggacaaagctaagcatcagagcatctatccggtgt
gcatgaagccctggctccaattctgtaaaacaaacaaagccccagcatat
agcccattttaaagatgagtatactgctttatcttaatataatttaaaag
atcaatctttgagaaaaaaaacaggcttggcaactcccaacaaacagcgt
gtgcctcggcagtgatgccaaacgcaggctctgtggccatctcggcacca
agatgtggaattgtactgttgcttggttttctaagtccggtatggaaagg
tgacagctgtctgtgtgcaggaatgttcagattcggaaatacttgacact
gtagtcatttgaaccaattaaggttctggacatttgcttgaagttagtct
tgtaaatgtgaaccaaatccctttaaaggtggcaggcagagttaacattc
aggctccggatgtgcagaccctggaacatatttgacaaatgtgtccaatg
cacctaatccctggactgcagatgccctggggacagagaagctgtttctt
atttctgttagaacatgagacttttaagtatatcacaggatatattttaa
ggaactaccttcaaaaaattataagatagccattagaagtatctttatta
tatatatatcatttttcagaatacagagattactattttttaatcaagct
gtcttactttagaagtttctaattattatatatctccctaatatgtaggt
agtcattgataagatatttatcttgattctaatattttcttccttttaaa
tatgatgcgtggtatgatgattcttgattttttggaagtgaaaactaaaa
tttgtttacaatgtagtaatttttaatcttcaaaaagcttttgatgctct
atacgtgtctacaaactcctatttcttttcaggcctaggactttgacttt
gtattgtcattcatgcaagctcagataagaagcctgtcagacacaggctt
ttccgaagaggcgccttcctgcagcatgggttacagcaagcaaagttcag
aatgggatttcagatttggaattatttagaggaaaactccttaaaaaa
gaattcccttggattctcaggtgctgtggaaaaagtgggtaaaagcttaa
tgttagaagcagactcccccatttctgccttcactattgactttaatatg
ggttaaataataacgggatctccagtctccctattgttcaacctccaaac
tcgtttccaaagtcttggaatttctatttctcaggtaaaaggagatttat
gtttctattgtgcagactggtttttcaaaccaacagaccacagattgttt
cctgagagccaggtcgacttgatttgaaaacagccgacaacaacgactta
aaaacttgtaacgtgtgtttatataaacgctcatcacaaatattccgctt
ctattaagctttgtttacttgcaaaggtcatgaaagagctatagaaggtt
ctccctgcggccgctgggggtcatttgctgagtcctgatgcctaagagag
caggtgacctggcccagttaaaatctttgcctcgcacattgtggtctctg
tgagtgtttggatctcagctctaccatatgtaaggggccagcattctgga
cagtctttgctggcacaagtcctgaactctggccatggtggtagcttctt
tgtgtctctgtccccctaaattagggacatacacacaattatctccacat
cctctagtttccaagactcaaagggcttacgttctttctgccaaaaccag
gggtggtggaagagggagattatccgggtgaattgtccccagctgctata
atgataggcatggttcaaaatccaaagtgcctttttttcctggagagcaa
tttgctcttggagggtcttgacccacatcagagacttctgcaatctccag
cagtcagacattattcccttttgcctttgctagttattcaatgtaaggaa
ctgtttctaccagccacttcactgcaaaccagaagcacgactgagcacag
caggtagttcctcagagtaatcatcaaggcacagggcaggcctgcctttc
tttaactctttcttcgtgggaaagctccctcctggttggctataaaaaac
ctggcaccagccttgaacactgtctgaagtattaaaagtcctctggaccg
taaaaggactcttgcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_36550991_36552105
seq2: B6Ng01-077E15.b_47_1144 (reverse)

seq1  TTTTTTAGGGAGATTTTTCCTCTAAAATAATTTCAAAAATCTTGGAAATC  50
      ||||||| ||||  ||||||||| |||||||| |  ||||||  ||||||
seq2  TTTTTTAAGGAG--TTTTCCTCT-AAATAATTCC--AAATCT--GAAATC  43

seq1  CCAATTCTGAACATCTGCTCTGCTGTAACCCATGCTGCACGGAAGGGCGC  100
      || ||||||||| | |||| ||||||||||||||||||| |||| |||||
seq2  CC-ATTCTGAAC-TTTGCT-TGCTGTAACCCATGCTGCA-GGAA-GGCGC  88

seq1  CTCTTCGGGAAAGCCCTGTGTCTGACAGGCTTCTTATCCTGAGCTTTGCA  150
      |||||||| |||| ||||||||||||||||||||||| |||||| |||||
seq2  CTCTTCGGAAAAG-CCTGTGTCTGACAGGCTTCTTAT-CTGAGC-TTGCA  135

seq1  TGAATGACAATACAAAGTCAAAGGTCCTAGGCCTGGAAAAGAAATAGGAG  200
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  TGAATGACAATACAAAGTCAAA-GTCCTAGGCCT-GAAAAGAAATAGGAG  183

seq1  TTTGTAGACACGTATAGGGCATCAAAAGCTTTTTTGAAGATTAAAAAATT  250
      ||||||||||||||||| ||||||||||| |||||||||||||||||  |
seq2  TTTGTAGACACGTATAGAGCATCAAAAGC-TTTTTGAAGATTAAAAA--T  230

seq1  TACTACATTGTAAACAAATTTTAGTTTTCACTTCCAAAAAAATCAAGAAT  300
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TACTACATTGTAAACAAATTTTAGTTTTCACTTCC-AAAAAATCAAGAAT  279

seq1  CATCATACCACGCATCATATTTAAAAGGAAGAAAATATTAGAATCAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATACCACGCATCATATTTAAAAGGAAGAAAATATTAGAATCAAGAT  329

seq1  AAATATCTTATCAATGACTACCTACATATTAGGGAGATATATAATAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTTATCAATGACTACCTACATATTAGGGAGATATATAATAATTA  379

seq1  G-AACTTCT-AAGTAAGACAGCTTGATT-AAAAATAGTAATCTCTGTATT  447
      | ||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  GAAACTTCTAAAGTAAGACAGCTTGATTAAAAAATAGTAATCTCTGTATT  429

seq1  CTG-AAAATGATATATATATAATAAAGATACTTCTAATGGCTATCTTATA  496
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAATGATATATATATAATAAAGATACTTCTAATGGCTATCTTATA  479

seq1  ATTTTTTGAAGGTAGTTCCTTAAAATATATCCTGTGATATACTTAAAAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGAAGGTAGTTCCTTAAAATATATCCTGTGATATACTTAAAAGT  529

seq1  CTCATGTTCTAACAGAAATAAGAAACAGCTTCTCTGTCCCCAGGGCATCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTTCTAACAGAAATAAGAAACAGCTTCTCTGTCCCCAGGGCATCT  579

seq1  GCAGTCCAGGGATTAGGTGCATTGGACACATTTGTCAAATATGTTCCAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCCAGGGATTAGGTGCATTGGACACATTTGTCAAATATGTTCCAGG  629

seq1  GTCTGCACATCCGGAGCCTGAATGTTAACTCTGCCTGCCACCTTTAAAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCACATCCGGAGCCTGAATGTTAACTCTGCCTGCCACCTTTAAAGG  679

seq1  GATTTGGTTCACATTTACAAGACTAACTTCAAGCAAATGTCCAGAACCTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGTTCACATTTACAAGACTAACTTCAAGCAAATGTCCAGAACCTT  729

seq1  AATTGGTTCAAATGACTACAGTGTCAAGTATTTCCGAATCTGAACATTCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTTCAAATGACTACAGTGTCAAGTATTTCCGAATCTGAACATTCC  779

seq1  TGCACACAGACAGCTGTCACCTTTCCATACCGGACTTAGAAAACCAAGCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACAGACAGCTGTCACCTTTCCATACCGGACTTAGAAAACCAAGCA  829

seq1  ACAGTACAATTCCACATCTTGGTGCCGAGATGGCCACAGAGCCTGCGTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACAATTCCACATCTTGGTGCCGAGATGGCCACAGAGCCTGCGTTT  879

seq1  GGCATCACTGCCGAGGCACACGCTGTTTGTTGGGAGTTGCCAAGCCTGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCACTGCCGAGGCACACGCTGTTTGTTGGGAGTTGCCAAGCCTGTT  929

seq1  TTTTTTCTCAAAGATTGATCTTTTAAATTATATTAAGATAAAGCAGTATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTCAAAGATTGATCTTTTAAATTATATTAAGATAAAGCAGTATA  979

seq1  CTCATCTTTAAAATGGGCTATATGCTGGGGCTTTGTTTGTTTTACAGAAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTTTAAAATGGGCTATATGCTGGGGCTTTGTTTGTTTTACAGAAT  1029

seq1  TGGAGCCAGGGCTTCATGCACACCGGATAGATGCTCTGATGCTTAGCTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCAGGGCTTCATGCACACCGGATAGATGCTCTGATGCTTAGCTTT  1079

seq1  GTCCCCAGCCTAAGAATTC  1115
      |||||||||||||||||||
seq2  GTCCCCAGCCTAAGAATTC  1098

seq1: chr3_36431365_36432498
seq2: B6Ng01-077E15.g_70_1187

seq1  GAATTCCCTTGGATTCTCAGGTGCTGTGGAAAAAGTGGGTAAAAGCTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTGGATTCTCAGGTGCTGTGGAAAAAGTGGGTAAAAGCTTAA  50

seq1  TGTTAGAAGCAGACTCCCCCATTTCTGCCTTCACTATTGACTTTAATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAAGCAGACTCCCCCATTTCTGCCTTCACTATTGACTTTAATATG  100

seq1  GGTTAAATAATAACGGGATCTCCAGTCTCCCTATTGTTCAACCTCCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAATAATAACGGGATCTCCAGTCTCCCTATTGTTCAACCTCCAAAC  150

seq1  TCGTTTCCAAAGTCTTGGAATTTCTATTTCTCAGGTAAAAGGAGATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTCCAAAGTCTTGGAATTTCTATTTCTCAGGTAAAAGGAGATTTAT  200

seq1  GTTTCTATTGTGCAGACTGGTTTTTCAAACCAACAGACCACAGATTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTATTGTGCAGACTGGTTTTTCAAACCAACAGACCACAGATTGTTT  250

seq1  CCTGAGAGCCAGGTCGACTTGATTTGAAAACAGCCGACAACAACGACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGCCAGGTCGACTTGATTTGAAAACAGCCGACAACAACGACTTA  300

seq1  AAAACTTGTAACGTGTGTTTATATAAACGCTCATCACAAATATTCCGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGTAACGTGTGTTTATATAAACGCTCATCACAAATATTCCGCTT  350

seq1  CTATTAAGCTTTGTTTACTTGCAAAGGTCATGAAAGAGCTATAGAAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAGCTTTGTTTACTTGCAAAGGTCATGAAAGAGCTATAGAAGGTT  400

seq1  CTCCCTGCGGCCGCTGGGGGTCATTTGCTGAGTCCTGATGCCTAAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGCGGCCGCTGGGGGTCATTTGCTGAGTCCTGATGCCTAAGAGAG  450

seq1  CAGGTGACCTGGCCCAGTTAAAATCTTTGCCTCGCACATTGTGGTCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGACCTGGCCCAGTTAAAATCTTTGCCTCGCACATTGTGGTCTCTG  500

seq1  TGAGTGTTTGGATCTCAGCTCTACCATATGTAAGGGGCCAGCATTCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTTGGATCTCAGCTCTACCATATGTAAGGGGCCAGCATTCTGGA  550

seq1  CAGTCTTTGCTGGCACAAGTCCTGAACTCTGGCCATGGTGGTAGCTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTGCTGGCACAAGTCCTGAACTCTGGCCATGGTGGTAGCTTCTT  600

seq1  TGTGTCTCTGTCCCCCTAAATTAGGGACATACACACAATTATCTCCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCTGTCCCCCTAAATTAGGGACATACACACAATTATCTCCACAT  650

seq1  CCTCTAG-TTCCAAGACTCAAAGGGCTTACGTTCTTTCTGCCAAAACCAG  699
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGTTTCCAAGACTCAAAGGGCTTACGTTCTTTCTGCCAAAACCAG  700

seq1  GGGTGGTGGAAGAGGGAGATTATCCGGGTGAATTGTCCCCAGCTGCTATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTGGAAGAGGGAGATTATCCGGGTGAATTGTCCCCAGCTGCTATA  750

seq1  ATGATAGGCATGGTTCAAAATCCAAAGTGCCTTTTTTTCCTGGAGAGCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGGCATGGTTCAAAATCCAAAGTGCCTTTTTTTCCTGGAGAGCAA  800

seq1  TTTGCTCTTGGAAGGACCTTGACCCACATCAGAGACTTCTGCAATCTCCA  849
      ||||||||||| |||  |||||||||||||||||||||||||||||||||
seq2  TTTGCTCTTGG-AGGGTCTTGACCCACATCAGAGACTTCTGCAATCTCCA  849

seq1  GCAGTCCAGACATTATTCCC-TTTGCCTTTAGCTAGTTATTCCATGTAAG  898
      ||||| |||||||||||||| ||||||||| ||||||||||| |||||||
seq2  GCAGT-CAGACATTATTCCCTTTTGCCTTT-GCTAGTTATTCAATGTAAG  897

seq1  GAACTGTTTCTAACCAGCCACTTCACTGCAAACCAGGAAGCACGACTGAG  948
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  GAACTGTTTCT-ACCAGCCACTTCACTGCAAACCA-GAAGCACGACTGAG  945

seq1  CACAGCAGGGCAGTTCCCCAGAGGAAATCATCAAGGCCACAGGGGCAGGC  998
      ||||||| || |||||| |||| | ||||||||||| |||| ||||||| 
seq2  CACAGCA-GGTAGTTCCTCAGA-GTAATCATCAAGG-CACA-GGGCAGG-  990

seq1  CCTGCCTTTCTTTTAACTCTTTCTTCTGTGGTGAAAAGTCTCTCTCCTGT  1048
      |||||||||| ||||||||||||||| |||| ||||   ||| |||||| 
seq2  CCTGCCTTTC-TTTAACTCTTTCTTC-GTGG-GAAA--GCTCCCTCCTG-  1034

seq1  GTTTTGTCTTATAGAAAACCTGGGCACCAGCCTGAACCAGCTG-CTGAGG  1097
         ||| | |||| ||||||| |||||||||||  | || ||| |||| |
seq2  --GTTGGC-TATAAAAAACCT-GGCACCAGCCTTGAACA-CTGTCTGAAG  1079

seq1  TATT-AGAGTCTCTTTGAAAC-TGAAAGGACTC-TGCCCC  1134
      |||| | |||| || || | | | ||||||||| ||||||
seq2  TATTAAAAGTC-CTCTGGACCGTAAAAGGACTCTTGCCCC  1118