BAC Information

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BAC

Clone NameB6Ng01-077G22
Chromosome3 (Build37)
Map Location 68,264,701 - 68,380,363
singlet/doubletdoublet
Overlap geneSchip1
Upstream geneGfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412, EG208426, EG545531, LOC631379
Downstream geneIl12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4, Arl14, Ppm1l, LOC667309, B3galnt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077G22.bB6Ng01-077G22.g
ACCDH893408DH893409
length1,149242
definitionDH893408|Mus musculus domesticus DNA, BAC clone: B6Ng01-077G22, 5' end.DH893409|Mus musculus domesticus DNA, BAC clone: B6Ng01-077G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,264,701 - 68,265,843)(68,380,122 - 68,380,363)
sequence
gaattctgataacctttgccatcagctgctcagaggaaacctctctccct
ggtaaataaacaacctatctctttccagactgctgcagatggcagtttga
gacaggggtctagctcccctccctaaaaaggcccattgacctttattgca
agtgaaatagcttatggggacagtaaatggctaaccttactgtactataa
aacagggctccctgtagcctctctctgctcagctccagaaagtcctgtta
atagcactcctcataaaagccctgtgccactgcccaggtgcaaaccttta
cagaaatacaactgaagcttccaaaattgcttgaagaaaaaaaaaaggtc
aaatgatattggtaactatttagtaggtgtttcttggccagagtttgaga
ttgctaattttgcatttttgttttttgtttgtttgtttgttttttgtttg
tttgttttggttttggttttgttttgctttggtctaaaggaagtggcaac
tgacaaggttctagaaacaggagaaggagcttaggttaacattgcattga
tagctccatctgacccagttatcaaaaataagtcaaactctgaaccaaag
aaattaaaagctaccaaaagaaacagcagctggccttccaaaatcctttt
tttagttaaaaacaaaaagtgtaaatgtgcattaaggccaaactactatg
atatcctttagcataatattaagtataaacataaaacaacaatacacatt
actcctttaatcccagtacttaggaggcagagagaagtgggtatctgtga
gttcaaggccagttatggaagactgagtaagttccagaagacccagagct
acatagtgagatcttgttttttaaaaaaatgaataaataaattcatacat
aaaatatgttacaaattcatcttaccacaagatctaaaagttatgtatcc
catcaaaagatttatttgtacctgactcacactgatgctcctttattcta
atataacttaatgtttatttttttgggtggaataaacaaactatgctatg
aattattcttgcttaatttttcggcatgactgtagcaatatacctaggca
gaagccacttaaatggtaaggaattaatgttgcctcacagtctcgatgg
aagggtgtgatctagatcagagctggtcatttaagctacagcaagtgggg
ggtgggggggatgaaagcctgtcattgtttcccattctgtacttaccccc
aaacaacactgcaggagaagagaaaaaaatagttgggagttttttagctc
aatggacccccttgacctaaacttgtgcttacattttaacaatatttcta
attcgtccatcataatctatttataagattttggccttttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_68264701_68265843
seq2: B6Ng01-077G22.b_49_1197

seq1  GAATTCTGATAACCTTTGCCATCAGCTGCTCAGAGGAAACCTCTCTCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATAACCTTTGCCATCAGCTGCTCAGAGGAAACCTCTCTCCCT  50

seq1  GGTAAATAAACAACCTATCTCTTTCCAGACTGCTGCAGATGGCAGTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATAAACAACCTATCTCTTTCCAGACTGCTGCAGATGGCAGTTTGA  100

seq1  GACAGGGGTCTAGCTCCCCTCCCTAAAAAGGCCCATTGACCTTTATTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGGTCTAGCTCCCCTCCCTAAAAAGGCCCATTGACCTTTATTGCA  150

seq1  AGTGAAATAGCTTATGGGGACAGTAAATGGCTAACCTTACTGTACTATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATAGCTTATGGGGACAGTAAATGGCTAACCTTACTGTACTATAA  200

seq1  AACAGGGCTCCCTGTAGCCTCTCTCTGCTCAGCTCCAGAAAGTCCTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGCTCCCTGTAGCCTCTCTCTGCTCAGCTCCAGAAAGTCCTGTTA  250

seq1  ATAGCACTCCTCATAAAAGCCCTGTGCCACTGCCCAGGTGCAAACCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACTCCTCATAAAAGCCCTGTGCCACTGCCCAGGTGCAAACCTTTA  300

seq1  CAGAAATACAACTGAAGCTTCCAAAATTGCTTGAAGAAAAAAAAAAGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATACAACTGAAGCTTCCAAAATTGCTTGAAGAAAAAAAAAAGGTC  350

seq1  AAATGATATTGGTAACTATTTAGTAGGTGTTTCTTGGCCAGAGTTTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATATTGGTAACTATTTAGTAGGTGTTTCTTGGCCAGAGTTTGAGA  400

seq1  TTGCTAATTTTGCATTTTTGTTTTTTGTTTGTTTGTTTGTTTTTTGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAATTTTGCATTTTTGTTTTTTGTTTGTTTGTTTGTTTTTTGTTTG  450

seq1  TTTGTTTTGGTTTTGGTTTTGTTTTGCTTTGGTCTAAAGGAAGTGGCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGGTTTTGGTTTTGTTTTGCTTTGGTCTAAAGGAAGTGGCAAC  500

seq1  TGACAAGGTTCTAGAAACAGGAGAAGGAGCTTAGGTTAACATTGCATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGTTCTAGAAACAGGAGAAGGAGCTTAGGTTAACATTGCATTGA  550

seq1  TAGCTCCATCTGACCCAGTTATCAAAAATAAGTCAAACTCTGAACCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCATCTGACCCAGTTATCAAAAATAAGTCAAACTCTGAACCAAAG  600

seq1  AAATTAAAAGCTACCAAAAGAAACAGCAGCTGGCCTTCCAAAATCCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAGCTACCAAAAGAAACAGCAGCTGGCCTTCCAAAATCCTTTT  650

seq1  TTTAGTTAAAAACAAAAAGTGTAAATGTGCATTAAGGCCAAACTACTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTAAAAACAAAAAGTGTAAATGTGCATTAAGGCCAAACTACTATG  700

seq1  ATATCCTTTAGCATAATATTAAGTATAAACATAAAACAACAATACACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTTTAGCATAATATTAAGTATAAACATAAAACAACAATACACATT  750

seq1  ACTCCTTTAATCCCAGTACTTAGGAGGCAGAGAGAAGTGGGTATCTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTTAATCCCAGTACTTAGGAGGCAGAGAGAAGTGGGTATCTGTGA  800

seq1  GTTCAAGGCCAG-TATGGAAGACTGAGTAAGTTCCAGAAGACCCAGAGCT  849
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGGCCAGTTATGGAAGACTGAGTAAGTTCCAGAAGACCCAGAGCT  850

seq1  ACATAGTGAGATCTTGTTTTTTAAAAAAATGAATAAATAAATTCATACAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTGAGATCTTGTTTTTTAAAAAAATGAATAAATAAATTCATACAT  900

seq1  AAAATATGTTACAAATTCATCTTACCACAAGATCTAAAAGTTATGTAT-C  948
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAATATGTTACAAATTCATCTTACCACAAGATCTAAAAGTTATGTATCC  950

seq1  CATCAAAAGATTTATTTGTACCTGACTCACACTGATGCTTCCTTTATTCT  998
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CATCAAAAGATTTATTTGTACCTGACTCACACTGATGC-TCCTTTATTCT  999

seq1  TATTATACTTATTGTTTTATTTTTTTGGTGTGTATATAACAAACTATGCT  1048
       ||   ||||| || ||||||||||||| ||| |   |||||||||||||
seq2  AATATAACTTAATG-TTTATTTTTTTGG-GTGGAATAAACAAACTATGCT  1047

seq1  ATG-ATTATTC-TGGTTAATTTT--CGCATGACTGTAACAATATACCTA-  1093
      ||| ||||||| || ||||||||   ||||||||||| ||||||||||| 
seq2  ATGAATTATTCTTGCTTAATTTTTCGGCATGACTGTAGCAATATACCTAG  1097

seq1  GCAGAAGCAACTTAAATAGGAAAGGATTTATG-TGCCTCACAGTC-GGAT  1141
      |||||||| |||||||| | || | ||| ||| ||||||||||||  |||
seq2  GCAGAAGCCACTTAAATGGTAAGGAATTAATGTTGCCTCACAGTCTCGAT  1147

seq1  GG  1143
      ||
seq2  GG  1149

seq1: chr3_68380122_68380363
seq2: B6Ng01-077G22.g_74_315 (reverse)

seq1  TCAAAAGGCCAAATTCTTCTAAATTGATTCTGATGGACGGCTTAGAAATA  50
      ||||||||||||| |||| ||||| |||| |||||||||  |||||||||
seq2  TCAAAAGGCCAAAATCTTATAAATAGATTATGATGGACGAATTAGAAATA  50

seq1  TTGTTAACTTGTAAGCACAAGTTTAGGTCAAGGGGGTCCATTGAGCTTAA  100
      |||||||  |||||||||||||||||||||||||||||||||||||| ||
seq2  TTGTTAAAATGTAAGCACAAGTTTAGGTCAAGGGGGTCCATTGAGCTAAA  100

seq1  AAACTCCCAACTATTTTTTTCTCTTCTCCTGCAGTGTTGTTTGGGGGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCCAACTATTTTTTTCTCTTCTCCTGCAGTGTTGTTTGGGGGTAA  150

seq1  GTACAGAATGGGAAACAATGACAGGCTTTCATCCCCCCCACCCCCCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAATGGGAAACAATGACAGGCTTTCATCCCCCCCACCCCCCACTT  200

seq1  GCTGTAGCTTAAATGACCAGCTCTGATCTAGATCACACCCTT  242
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGCTTAAATGACCAGCTCTGATCTAGATCACACCCTT  242